mRNA_L-elsbetiae_contig581.14245.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig581.14245.1 vs. uniprot
Match: D8LQA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQA3_ECTSI) HSP 1 Score: 772 bits (1994), Expect = 4.890e-247 Identity = 625/1383 (45.19%), Postives = 751/1383 (54.30%), Query Frame = 3 Query: 267 AGNGYRHD--GYAYDDQVDLDDDDAAGYQHGYGGGXXXXXXXXXXXXXXXXXXXXXXXXDSGAARRGGAPPEGRAVYAPPVPASINNRGGTGTSQYXXXXXXXXXPARRAGPPGATRFPNPSTAYGTHAYRSPSSPXXXXXXXXXXXXAGGSTRQHQGFGGVAGQLLDAAGHLSPAAKEVSGKGARY---------AASNDRAAARR---------------GLYAPSGGAAGEAPGAASSKGGYGLNLSVDHHSDDGRDDRFRGRGSSGSQGRGGTPEGFSQHXXXXXXXXXXXXXXXXXXXHHSRA-------------------------------------------------------------------GCWGDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAP-RPPGKSLPWAVIEEAGQRQLGVPAEERRTRPKEEQERISPFDGCPIEGCPMADSSGIGVGWMARHLEQHTKVAMERPQKELYIRGTVAEILHDLCLDCEAPPSQRKFERKKMSRALFGMPQEGIGHLAGVMETIVTGDNKNPRVRRCALDLAVGGCEGASGEDTIVRCDLCKAWFHVTCGQVAIGDGMSTEDATDETLCRTCARMAIGATQGKDPTAAMQRQLALVREKSKKMLAFLEXXXXXXXXXXGPLEGVIDLNLSIGARGRTLNSRAPSGVDKKDTADAXXXXXXXXXXXXXVDGKTDAGAATGNNIINXXXXXXXXEGHGG---NYSRPASCAAAGCEQQSRTDSKYCCESCGVRTAEAEMSEAVRHSLEMRSGLDRARRVRETREIKARKHKLGIAMRKVEFPQVPAFGIKREAGLQTMTVRRHRLWQRLIEIGAYWEKVS-------SGSKNLSVNGKSAALMRXXXXXXXXXXXXXXXXXXXXXXXPGG--------SSAGARGSQVAGXXXXXXXXXXXXXXXXPAREVGDEATVETLPAKEVAGAAAAAGETTREAXXDTPRQ--ANGATGGDGGSAVASQAASTGAEGAEDGADRRVPSPSAGAT--------GNEKCTS--QATLXXXXXXXXXGQSASEARAADRGPTPMEV---EEESSAERGVEATADPESGSEKVWAYGVFDGLSVVWYRPPGGGEADQLSSKPQLEEYWRKTCAHDEVPGHFTFWAKDARPHWKRVDVDCSGEEVRPAKKPKVTAAXXXXXXXRQTAREGVASFTCAYCAEETGPLVTEHLEQCYRKVIAERNKRLKRATLRPLREGRRVPGGGSRPXXXXSVTGAVVAAPEEAAALNSPAAIGRQLLSRIVPYADFDELPDPTRFQLHQDLKGWKDSPSRLDFLFKELVRQRNAAIYELQALDREEAEVEANARHDWTADSLRCVPR 4034 AGNGY +D GY YD+ D DD D + QHG+G ++ RG P R VYAPP INN G G+SQY P+RR GPPGATR+PNPSTAY +Y P SP S RQ QGFGGVAGQLL+AAG LSP+ K SG A + AA +++AAR GLYAPSGG +GE PGA SS+G G D G + RFR RG S P ++ H RA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AP RPP L W IE AG+R+LGVPAEERRT+ E E +SPF GCPI CPM S GI V WMARHLE HTKVAME+PQKELYIR +VAEILH++CLD E P +QRKFER+KMSRAL P+ GIGHLAG++ET+VTGDNK+P VRRCA DLAVGGCEG + E TIVRCD C AW+HV+CGQ+ GDG+S+E+A +ETLCRTCAR+AIGA QGKDPTA +Q+QL+LVREK KML FLE G GV DL L+I R +++ GV KD G + A GN+ G+GG +RP CAAA C ++SR DSK+CC++CGV AEA +++A+RH +E +G+DR RR+RETRE+K RK ++G+AM+KVEFP+VP F +RE L + VR+ RLWQRLIEIGAYWEKVS + ++ + A XXX GG S++ + G QV XXXXXXXXXXXXX EA V KEV G XX T Q +NG G +GG A + A +G A + + S G G T A + G++A + +AA+ MEV + E+ + G+E + + W YG F V+WY PPGGGEAD+ +S QL+ Y R+ + VPG FTF KDA P W+RVD AK A GV +F C YC EETGP V+EHLE+CYRK A RN+RLK ATLRPLR+ + GG SR SVT V P AAL+SPAAIGRQLLSR + YA+FD LPDP+RFQLH DLKGW++SPSRLDFL+KELVRQRNAAIYELQALDREEAE+E + RHDW D LR +PR Sbjct: 2 AGNGYGNDRGGYVYDE--DDDDGDYSAQQHGHGSRNFADRGYSSYDGRYDINNAYQTTRYDPSSPRGLGGPHDRGVYAPPTATIINNNRGVGSSQY---------PSRRGGPPGATRYPNPSTAYDNFSY--PPSPRPPP-----------SPRQPQGFGGVAGQLLNAAGQLSPSNKRASGGRAVFDDEVTIGPAAAGGEKSAARLKSTSAXXXXXXASRFGLYAPSGGGSGEIPGAGSSRGDDG---------DGGGNARFRDRGRSQIAKAPTNP----RYQERTRNSFEERDQQMREQKHQQRAPHQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSRPP---LSWITIERAGKRRLGVPAEERRTKLGGENETVSPFQGCPIHDCPMGSSDGISVSWMARHLESHTKVAMEKPQKELYIRSSVAEILHEMCLDSEVPRAQRKFERRKMSRALLDTPRAGIGHLAGMIETVVTGDNKSPHVRRCAHDLAVGGCEGITREGTIVRCDKCMAWYHVSCGQMVRGDGISSEEAREETLCRTCARIAIGAPQGKDPTATLQKQLSLVREKRTKMLEFLEEDVET-----GAPCGVFDLPLNI----RDVSTAG--GVGPKD-------------------GNANGPDAGGNS----------NGGNGGVDKRDNRPP-CAAASCGRESRQDSKFCCDACGVLHAEAFLAKAIRHHVEESAGIDRGRRLRETRELKTRKQQVGLAMKKVEFPRVPGFKTERETALHALVVRKCRLWQRLIEIGAYWEKVSGSRVGVLAATRTAAQTSSRKATAXXXXSVTASGAVDPALSRSAPERLAGGRDRGGVIASASSSGGVQVELDVGXXXXXXXXXXXXXXXXXXXXEAEVSGA-GKEVVGXXXXXXXXXXXXXXGTEGQGASNGCVGWEGGGAK--KRAREDGDGPPQQAAKSLKQTSNGEAASGIDVGGGGAAITEPPSAAVAMGAQSKGKGKAALDPQAAESPTAAMEVSSADPEAEIDTGLEVPDTMAEIAGQAWTYGSFGKERVLWYCPPGGGEADRCTSSEQLQAYLRERYGNGRVPGQFTFSGKDAPPQWERVDARRPDNGSLIAKDKDKAAVPPPPSG-------GVQNFMCVYCGEETGPWVSEHLERCYRKTTAMRNERLKHATLRPLRDNHFLQGG-SR-LGAASVTEPVSVPPS--AALDSPAAIGRQLLSRRIAYANFDSLPDPSRFQLHHDLKGWRESPSRLDFLYKELVRQRNAAIYELQALDREEAELEVHLRHDWMKDDLRSIPR 1289
BLAST of mRNA_L-elsbetiae_contig581.14245.1 vs. uniprot
Match: A0A6H5L313_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L313_9PHAE) HSP 1 Score: 716 bits (1848), Expect = 3.780e-226 Identity = 582/1307 (44.53%), Postives = 703/1307 (53.79%), Query Frame = 3 Query: 501 VPASINNRGGTGTSQYXXXXXXXXXPARRAGPPGATRFPNPSTAYGTHAYRSPSSPXXXXXXXXXXXXAGGSTRQHQGFGGVAGQLLDAAGHLSPAAKEVSGKGARY---------AASNDRAAARR---------------GLYAPSGGAAGEAPGAASSKGGYGLNLSVDHHSDDGRDDRFRGRGSS-------GSQGRGGTPEGFSQHXXXXXXXXXXXXXXXXXXXHHSRAGCWGDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPRPPGKS---------------------------------------------------------------------LPWAVIEEAGQRQLGVPAEERRTRPKEEQERISPFDGCPIEGCPMADSSGIGVGWMARHLEQHTKVAMERPQKELYIRGTVAEILHDLCLDCEAPPSQRKFERKKMSRALFGMPQEGIGHLAGVMETIVTGDNKNPRVRRCALDLAVGGCEGASGEDTIVRCDLCKAWFHVTCGQVAIGDGMSTEDATDETLCRTCARMAIGATQGKDPTAAMQRQLALVREKSKKMLAFLEXXXXXXXXXXGPLEGVIDLNLSIGARGRTLNSRAPSGVDKKDTADAXXXXXXXXXXXXXVDGKTDAGAATGNNIINXXXXXXXXEGHGG---NYSRPASCAAAGCEQQSRTDSKYCCESCGVRTAEAEMSEAVRHSLEMRSGLDRARRVRETREIKARKHKLGIAMRKVEFPQVPAFGIKREAGLQTMTVRRHRLWQRLIEIGAYWEKVSSGSKNLSVNGKSAALM---RXXXXXXXXXXXXXXXXXXXXXXXP---------GGSSAGARGSQVAGXXXXXXXXXXXXXXXXPAREVGDEATVETLPAKEVAGAAAAAGETTREAXXDTPRQ--ANGATGGDGGSAVASQAASTGAEGAEDGADRRVPSPSAG--ATGNEKCTSQATLXXXXXXXXXG-------QSASEARAADRGPTPMEV---EEESSAERGVEATADPESGSEKVWAYGVFDGLSVVWYRPPGGGEADQLSSKPQLEEYWRKTCAHDEVPGHFTFWAKDARPHWKRVDVDCSGEEVRPAKKPKVTAAXXXXXXXRQTAREGVASFTCAYCAEETGPLVTEHLEQCYRKVIAERNKRLKRATLRPLREGRRVPGGGSRPXXXXSVTGAVVAAPEEAAALNSPAAIGRQLLSRIVPYADFDELPDPTRFQLHQDLKGWKDSPSRLDFLFKELVRQRNAAIYELQALDREEAEVEANARHDWTADSLRCVPR 4034 V INN G G+SQ+ P+RR GPPGATR+PNPSTAY +Y P SP XXXX RQ QGFGGVAGQLL+AAG LSP+ K SG A + AA +++AAR GLYAPSGG +GE PGA SS+G G D G DRFR RG S + + GT + F + H +A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +PRPP L W IE AG+R+LGVPAEERR E E +SPF GCPI CPM S GI V WMARHLE HTKVAME+PQKELYIR +VAEILH++CLD E P +QRKFER+KM+RAL P+ GIGHLAGVMET+VTGDNK+P VR + G CEG + E TIVRCD C AW+HV+CGQ+ GDG+S+E+A +ETLCR CAR+ IGA QGKDPTA +Q+QL+LVREK KML FLE G GV DL L+I R +N+ GV+ KD G AA GN+ G+GG +RP CAAA C ++SR DSK+CC++CGV AEA +++A+RH +E +G+DR RR+RETRE+K RK ++G+AM+KVEFP+VP F +RE L + RR RLWQRLIEIGAYWEKVS + K+AA + XXXXXXXXXX P GGS A GS E XX Q +N G +GG A + A G +G A + S G A+G + A + G ++A + +AA+ +V + E+ ++G+E + K W YG FD V+WY PPGG EAD+ +++ QL+ Y R+ + VPG FTF KDA PHW+RVD C AK A GV +FTC YC EETGP V+EHLE+CYRK A RN+RLK ATLRPL + + GG SR SVT V P A L+SPAAIGRQLLSR + YA+FD LPDP+RFQLH DLKGW++SPSRLDFL+KELVRQRNAAIYELQALDREEAE+E + RHDW D LR +PR Sbjct: 53 VATIINNNRGVGSSQH---------PSRRGGPPGATRYPNPSTAYDNFSY--PPSPRPXXXX-----------RQPQGFGGVAGQLLNAAGQLSPSNKRASGGRAVFDDEVTIGPAAAGGEKSAARLKSTSAXXXXXXXSRFGLYAPSGGGSGEIPGAGSSRGDLG---------DGGGSDRFRDRGRSQIARAPTNPRYQDGTRKSFEERDEQVREQKHQQRAP-----HQRKASA---PPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPRPPAAPADPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPSRPPLSWITIERAGKRRLGVPAEERRMMLGGENETVSPFRGCPIHDCPMGSSDGISVSWMARHLESHTKVAMEQPQKELYIRSSVAEILHEMCLDSEVPRAQRKFERRKMARALLDTPRAGIGHLAGVMETMVTGDNKDPHVRHEPQE---GXCEGITREGTIVRCDKCMAWYHVSCGQMVRGDGISSEEAREETLCRACARITIGAPQGKDPTATLQKQLSLVREKRTKMLEFLERDVET-----GTPCGVFDLPLNI----RDVNTAG--GVELKD-------------------GNAKGPAAGGNS----------NGGNGGVDMRDNRPP-CAAASCGRESRQDSKFCCDACGVLHAEAFLAKAIRHHVEESAGIDRGRRLRETRELKTRKQQVGLAMKKVEFPRVPGFKTERETALHGLVARRCRLWQRLIEIGAYWEKVSGSRVGVLAATKTAAQTSSRKAXXXXXXXXXXSGAFDPALSRSAPQRQTGVRDRGGSIASVSGSGGIQVELDVGGCSIAAAAKNDTAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGASNICVGWEGGGAK--KRAREGGDGPSQQAANSLKQTSNGEAASGIDVGGGSAAIPETPSAAAMGAHSKGKGKAALDPQAAESTTAATDVSSADPEAEIDKGLEGPDTTAEIAGKAWTYGSFDKERVLWYCPPGGREADRCTNREQLQAYLRERYGNGRVPGQFTFSGKDAPPHWERVDAHCPDNGSLIAKHKDKAAVPPSPSG-------GVQNFTCVYCGEETGPRVSEHLERCYRKTTAMRNERLKHATLRPLPDNHFLQGG-SR-LGAASVTEPVSLPPS--ACLDSPAAIGRQLLSRRIAYANFDSLPDPSRFQLHHDLKGWRESPSRLDFLYKELVRQRNAAIYELQALDREEAELEVHLRHDWMKDDLRSIPR 1263 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig581.14245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig581.14245.1 >prot_L-elsbetiae_contig581.14245.1 ID=prot_L-elsbetiae_contig581.14245.1|Name=mRNA_L-elsbetiae_contig581.14245.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1268bp MAGRNSPRAGNGYRHDGYAYDDQVDLDDDDAAGYQHGYGGGGFGSRGYSSback to top mRNA from alignment at L-elsbetiae_contig581:4490..17186+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig581.14245.1 ID=mRNA_L-elsbetiae_contig581.14245.1|Name=mRNA_L-elsbetiae_contig581.14245.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=12697bp|location=Sequence derived from alignment at L-elsbetiae_contig581:4490..17186+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig581:4490..17186+ >mRNA_L-elsbetiae_contig581.14245.1 ID=mRNA_L-elsbetiae_contig581.14245.1|Name=mRNA_L-elsbetiae_contig581.14245.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=7608bp|location=Sequence derived from alignment at L-elsbetiae_contig581:4490..17186+ (Laminarionema elsbetiae ELsaHSoW15)back to top |