mRNA_L-elsbetiae_contig575.14148.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig575.14148.1 vs. uniprot
Match: A0A6H5JT44_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JT44_9PHAE) HSP 1 Score: 1113 bits (2880), Expect = 0.000e+0 Identity = 754/1038 (72.64%), Postives = 824/1038 (79.38%), Query Frame = 3 Query: 309 RRRTRSDEMEKVTAQRMQTLKRLLPGLEAGQLVSRAPALLGSTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLYHEDTLAPRIEFIKRLFPETPKLLSRAPVLLTHDPETFLLPKIKQLESLLPGVDVLKVVRTEPTILYLDIGGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSKIETTVAAKFQQLQELFPDANVVSMVESDATVLLYDYTSVSIKVDCWRERVSNVTELNQLIQDYPLLLSYSLDTSVSRLDFLIESNGAKFSAPHLRKMVRMAKRDWMALHGDKYRRFLERKVEGPSSMRLWPGLYFDSDTKDTKGGAGGKKLLQGEGMSAKFQDDGSVEVSSAAELKATNAYIKSLEKQYGKTIKETQLRFSPALRRGKYGDNPSEVDMILYDIKSFDQQVRKFATGYRVKRFKELLPGLETKTLFTDYPKVLMMDLKKASHLAPCSVSYCTQVEEKVEELRELLPGECVARVVSSAPDLLLNDVQTCLRPRMTRLVAALTTVKQFEGIIDADKVRAXXXXXXXXXXXXXXNVVVPSLQYMLQSTSDHDELGKRLFRDPSLLVVGVGPLARLQYTLEQHRNGTASIATGYLGAAV--VSTSTAAYFDNPWVGAGSSGSPKAEAGAEDMPGRKTRKRKGGKNTSMSLSAVDLSLSLEEDQTRLLPPVIVPQQVLKCQLRDFVARNPEYISFLAQRQGLDASSIFHNANTNVEGDGQLEENGYQSQVVFWERAVGGRLSEMFRPVDSPYAREKMREAAGNG-----QKGPSLSELDMLIGDVLYFNHRMGVLASKIQKKMPPAVDIGEEASKLAEDVQWGSRQIRRLLGLGSWTEQVEVADTDASCESKSGSAAGGDAPQHQDKEDVCEPRLALPQQKQRGKKRQWVSDTFQSMLGSVGGG--GDNDSVEAVGTVEAAVKAKQGGDRETAQELERLLGEVSSYEGRLDNLLDLSSPIRIS-DDDSIPTDAGVDENDNSR*LPGGISHYTLDGEAG 3392 +RRTRSD+M++VTAQRMQTLKRLLPGLEAGQLVSRAPALLGSTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LLYHEDTLAPRIEF+KRLFPE+P+LLSRAP+LLTHDPETFL+PKI QLESLLPG+DVLKVVRTEPTILYLDIGGL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TTVAAKFQQLQ+LFPDANVVSMVESDATVLLYDYTSV +KVDCWRERVSN TELNQLIQDYPLLLSYSLDTSVSRLDFLIE+ G K +R VRMAKRDW+A+HG KYR+FLERKVEGPS +RLWPGLYFDSDT G G +LL+GEGMSAK QDDGSVEVSSAAE+K +AYIK+LE++YGK IKETQLRF+PA+RRGK GDNPSEVDMILYDIKSFDQQVRK ATGYR+KRFKELLPGL+T+TLFT+YP VL+MDLKK VE+KVEELRELLPGE VA VVS APDLLLNDVQTCLRPRMTRLVAALTTVKQF+G XXXXXXXXXXXXXX VPSLQYMLQSTSDHDEL RLFRDPSLLVVGVGPLARLQYTLEQHRNG+ASIA G LGA V + TA++ PWVGAGS KA G G + +R K+ + S + L EDQ+RLLPPVIVPQ +LKCQ+RDF+ RNPEY+SFLAQRQGLD SS+ H + EGD Q V FWERAVG RLSEMFRPVDSPYARE MREA NG QK P LSELDMLIGDVL+FN RM VLASKIQKKMP VD+GEEA KLAEDV+WGSRQI+RLLGLGSWTEQ ++ S DA ++ VC P PQ K+RGKKR+WVSDTFQS++GSVGG G D+++ VE +VK GG+RETAQELERLLGEVSS EGRLDNLLDLSS I + DD S P + G GG+S T G Sbjct: 52 KRRTRSDDMDEVTAQRMQTLKRLLPGLEAGQLVSRAPALLGSTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLYHEDTLAPRIEFMKRLFPESPRLLSRAPLLLTHDPETFLMPKIHQLESLLPGIDVLKVVRTEPTILYLDIGGLVKRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTVAAKFQQLQDLFPDANVVSMVESDATVLLYDYTSVGVKVDCWRERVSNATELNQLIQDYPLLLSYSLDTSVSRLDFLIETTGVKPRPATMRTTVRMAKRDWLAVHGVKYRKFLERKVEGPSVLRLWPGLYFDSDTGSGNGSGG--RLLKGEGMSAKLQDDGSVEVSSAAEMKEASAYIKALERKYGKIIKETQLRFTPAVRRGKLGDNPSEVDMILYDIKSFDQQVRKLATGYRLKRFKELLPGLDTETLFTEYPNVLLMDLKK--------------VEDKVEELRELLPGERVAGVVSVAPDLLLNDVQTCLRPRMTRLVAALTTVKQFQGXXXXXXXXXXXXXXXXXXXXXXXXXXVPSLQYMLQSTSDHDELATRLFRDPSLLVVGVGPLARLQYTLEQHRNGSASIALGNLGAYVGPEAALTASHHPTPWVGAGSG---KAATG-----GTFSLRRPSTKDDASS------DVHLGEDQSRLLPPVIVPQ-ILKCQMRDFITRNPEYVSFLAQRQGLDVSSMSH----SPEGDDQ--------SVAFWERAVGRRLSEMFRPVDSPYARE-MREARANGKGPDGQKAPPLSELDMLIGDVLHFNDRMTVLASKIQKKMPQTVDVGEEAKKLAEDVKWGSRQIKRLLGLGSWTEQNVATPHSEVQVAEIPSQNANDASKN-----VCNPMSTFPQGKRRGKKRRWVSDTFQSLMGSVGGSAAGGADAIKVATAVEVSVK--DGGNRETAQELERLLGEVSSNEGRLDNLLDLSSSIPDNTDDSSSPAEDG-----------GGVSGTTSTATDG 1027 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig575.14148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig575.14148.1 >prot_L-elsbetiae_contig575.14148.1 ID=prot_L-elsbetiae_contig575.14148.1|Name=mRNA_L-elsbetiae_contig575.14148.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1072bp MHRSKGASLLGAALCVLSLRLGSCFTTSSAGASRQTATALRSASVANKDKback to top mRNA from alignment at L-elsbetiae_contig575:8842..23143+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig575.14148.1 ID=mRNA_L-elsbetiae_contig575.14148.1|Name=mRNA_L-elsbetiae_contig575.14148.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=14302bp|location=Sequence derived from alignment at L-elsbetiae_contig575:8842..23143+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig575:8842..23143+ >mRNA_L-elsbetiae_contig575.14148.1 ID=mRNA_L-elsbetiae_contig575.14148.1|Name=mRNA_L-elsbetiae_contig575.14148.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=6432bp|location=Sequence derived from alignment at L-elsbetiae_contig575:8842..23143+ (Laminarionema elsbetiae ELsaHSoW15)back to top |