mRNA_L-elsbetiae_contig570.14084.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig570.14084.1
Unique NamemRNA_L-elsbetiae_contig570.14084.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig570.14084.1 vs. uniprot
Match: A0A6H5K5X6_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5X6_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 7.660e-11
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 3 
Query: 1107 PFEFDSVVRVLGVEDPEVQGKLLTVIGFEAAADGGPGTVVLQRRGRVVKAPASKVYRL 1280
            PF FDSVVRVLGV+DP   GKL+TV+GFE    GG G VVLQR+ +VV+ PA  V+ +
Sbjct:  690 PFAFDSVVRVLGVDDPRTDGKLMTVVGFEPCPKGGEGIVVLQRKRKVVRVPAENVFNV 747
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BLAST of mRNA_L-elsbetiae_contig570.14084.1 vs. uniprot
Match: D7G0S5_ECTSI (Calcium dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S5_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 1.750e-10
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 3 
Query: 1107 PFEFDSVVRVLGVEDPEVQGKLLTVIGFEAAADGGPGTVVLQRRGRVVKAPASKVYRL 1280
            PF FDSVVRVLGV+DP   GKL+TVIGFE    GG G VVLQR+ +VV+ P + V+ +
Sbjct:  685 PFAFDSVVRVLGVDDPRTDGKLMTVIGFEPCPRGGAGIVVLQRKRKVVRVPTANVFNV 742
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig570.14084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K5X6_9PHAE7.660e-1160.34EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D7G0S5_ECTSI1.750e-1060.34Calcium dependent protein kinase n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig570contigL-elsbetiae_contig570:7773..10023 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1877
Cds size1062
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig570.14084.1prot_L-elsbetiae_contig570.14084.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig570 8361..9796 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816609.0057225-UTR-L-elsbetiae_contig570:7772..83601622816609.0057225-UTR-L-elsbetiae_contig570:7772..8360Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig570 7773..8360 -
1691683682.2041698-UTR-L-elsbetiae_contig570:7772..83601691683682.2041698-UTR-L-elsbetiae_contig570:7772..8360Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig570 7773..8360 -
1622816609.0422165-UTR-L-elsbetiae_contig570:9796..100231622816609.0422165-UTR-L-elsbetiae_contig570:9796..10023Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig570 9797..10023 -
1691683682.2310705-UTR-L-elsbetiae_contig570:9796..100231691683682.2310705-UTR-L-elsbetiae_contig570:9796..10023Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig570 9797..10023 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816609.0200262-CDS-L-elsbetiae_contig570:8360..92761622816609.0200262-CDS-L-elsbetiae_contig570:8360..9276Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig570 8361..9276 -
1691683682.215-CDS-L-elsbetiae_contig570:8360..92761691683682.215-CDS-L-elsbetiae_contig570:8360..9276Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig570 8361..9276 -
1622816609.0323074-CDS-L-elsbetiae_contig570:9650..97961622816609.0323074-CDS-L-elsbetiae_contig570:9650..9796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig570 9651..9796 -
1691683682.2229176-CDS-L-elsbetiae_contig570:9650..97961691683682.2229176-CDS-L-elsbetiae_contig570:9650..9796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig570 9651..9796 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig570.14084.1

>prot_L-elsbetiae_contig570.14084.1 ID=prot_L-elsbetiae_contig570.14084.1|Name=mRNA_L-elsbetiae_contig570.14084.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=354bp
MCGVDACVACVWKDHRRALSTGGVFACERFKTHASQPLDITTPQQLCHRC
NWCLGAPSLGHRLMRCDRCDCDVCALCVATVPAQEVKVQRAKAAARSAQL
AAKKTDTEQAERLLHDMSIGGATPGGPGPPHPPPAGGLPSPPQPPLTSAL
PPPPCYGAVAAAPSHGGPPAATAAQPTPPSYGAMAGPSSSSAPVSSTNGH
VTQAPALPSYNAMAGSSPAAAAPSYQDMAAAVSALPGGKQQQPPSYSSFA
QTGGGAEAAGEGRGPNRLPPPASCSPERETPAPTASAANGAGSPFEFDSV
VRVLGVEDPEVQGKLLTVIGFEAAADGGPGTVVLQRRGRVVKAPASKVYR
LTD*
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mRNA from alignment at L-elsbetiae_contig570:7773..10023-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig570.14084.1 ID=mRNA_L-elsbetiae_contig570.14084.1|Name=mRNA_L-elsbetiae_contig570.14084.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2251bp|location=Sequence derived from alignment at L-elsbetiae_contig570:7773..10023- (Laminarionema elsbetiae ELsaHSoW15)
CGTTGCTGTCGGCGGCAAGAGTTACAGCTGCAGGTTGTTGGGCTACTTCT
GTATGGGAGATCTCTGCCGTGTGTTGTCTTGGCCGTTCGTGCCGATGGAG
CCGCTGTTCTGGAGTGCCTTAGGTCGACCGCACAGCAGCAGAGCCCTTTT
TGATTGAATGGGCCAACCTGTGTGGTTGTGCTCCACCCCTCCCTCCCTCC
CCCCGCGCTTGCGTTCGTGTTTGCAGGATGTGTGGTGTGGACGCCTGCGT
CGCCTGCGTCTGGAAGGACCACCGCAGGGCACTGTCCACGGGAGGCGTTT
TCGCGTGCGAACGCTTCAAGACACACGCGTCTCAACCGCTGGATATCACC
ACCCCGCAGCAGCTCTGCCACAGGTCAGTTAGGCATGGGGGCTTGTAAGG
TGGACGCGAATCTACTCCCGCCGTAAAATTTCGTGGTGGTAGGTTTTCGG
CGCGAATGGCCTCGCCGTTTTGGCTCTTCGCTGTTCGGTGAGGAGCGCTA
ATGATTGACTCACGTGCACAGGTCGACAAGTTGTGGCGCAGCGGGTATGT
AGGTGTGAACTCGAGCCCCCAATGCAGAGACGGCCGACCCACAAATGCGT
GCCGATACCTCGAATCATCGAACTATTTCCGGTCTAACCTACCAAATGTT
CTCCACAAGCCTAAACTTGATCGACACACTTACTCGCTGTCCGCCATTGA
CTGCGTCGCCTGCCTGCGATCGTGTGTGTGGGGTAAAATGGAACCAGGTG
TAACTGGTGCCTGGGGGCGCCAAGCCTCGGGCACCGCTTGATGCGGTGCG
ATCGCTGCGACTGCGATGTCTGCGCGCTGTGCGTGGCGACAGTCCCAGCC
CAGGAGGTCAAGGTCCAGCGGGCGAAGGCAGCCGCACGCTCGGCGCAGCT
GGCGGCGAAGAAGACGGACACAGAGCAGGCGGAACGCCTCCTCCACGATA
TGTCCATCGGCGGGGCAACACCGGGGGGCCCGGGACCTCCCCACCCCCCA
CCCGCAGGAGGGTTGCCGTCGCCGCCCCAGCCGCCCCTAACCTCGGCCCT
TCCGCCGCCGCCGTGCTACGGGGCGGTTGCGGCGGCGCCGTCACACGGCG
GTCCACCCGCTGCTACGGCCGCGCAGCCGACCCCACCGTCGTACGGCGCG
ATGGCGGGACCGTCATCATCGTCGGCGCCGGTGAGCTCTACGAACGGGCA
TGTCACCCAGGCGCCGGCGCTGCCGTCGTACAACGCGATGGCGGGGTCGT
CGCCCGCCGCCGCTGCACCTTCGTATCAAGACATGGCCGCCGCGGTTTCC
GCGCTCCCCGGAGGGAAGCAGCAGCAACCCCCGTCTTATTCCAGCTTTGC
CCAGACCGGCGGGGGGGCAGAAGCAGCAGGGGAAGGGCGCGGCCCCAACC
GGCTGCCCCCGCCCGCATCCTGTAGCCCGGAGAGGGAGACACCGGCGCCG
ACGGCTAGCGCCGCCAACGGGGCGGGTTCGCCGTTCGAGTTCGACTCCGT
GGTGCGAGTGCTGGGCGTGGAGGACCCGGAGGTGCAAGGGAAGCTCCTAA
CCGTCATCGGCTTTGAGGCGGCGGCAGATGGGGGGCCCGGGACGGTCGTG
CTCCAGAGGAGGGGCCGGGTTGTGAAGGCCCCTGCTTCCAAGGTGTACAG
ACTCACCGATTGATTCGGGGCATACTAAATATGTATGTGCGTTAGTATCG
CAGGCCCAGTGTCGCAATCAATGGAGTACGGGTACAGGCTGTGCTCCCTG
AAAATGAGGCGCAGGCTGAAGAGGGGCGTTCTATTGTAGCGGCTGCCGGC
CGCTCTTGTCTCCTGCCCGCAAAGATAATCGCAGGCTGAGCGGTTCTCAC
AACGACACAAGGTGCTTCGAAGGATGTATCGACAACGGCCCGGACAGAAA
CTACACCGACGAGGCCGAGCACGACGGTAGTGTCATGGGCCCATTGTTTT
CCGTTGTCGCTCTCGTTGAATTATTAGTAGATTTGTGGGTTGCAGCGGCG
GGAACCATGAGGTCCACTGCCTGCCGCTCTCTTGTCTGCAGGGTGTGCAC
AAGCGAACAAGTGCTCGTATTTGGCGGGTTTTTTGAGTGAGTACTACCGC
ACCGCCATATTCGGTGGAATTTTAGTGAGTGAATACAAACAGATTTGTTG
GTTATTACGGCGTGTAGCTTAAGGCAGGCCACGATCAGTGGCCCGGTAGC
GTCCCCTATTTTACTGTACAACCTGGATTAAATATTTATCTTGATTATAA
A
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Coding sequence (CDS) from alignment at L-elsbetiae_contig570:7773..10023-

>mRNA_L-elsbetiae_contig570.14084.1 ID=mRNA_L-elsbetiae_contig570.14084.1|Name=mRNA_L-elsbetiae_contig570.14084.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2124bp|location=Sequence derived from alignment at L-elsbetiae_contig570:7773..10023- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTGGTGTGGACGCCTGCGTCGCCTGCGTCTGGAAGGACCACCGCAG
GGCACTGTCCACGGGAGGCGTTTTCGCGTGCGAACGCTTCAAGACACACG
CGTCTCAACCGCTGGATATCACCACCCCGCAGCAGCTCTGCCACAGATGT
GTGGTGTGGACGCCTGCGTCGCCTGCGTCTGGAAGGACCACCGCAGGGCA
CTGTCCACGGGAGGCGTTTTCGCGTGCGAACGCTTCAAGACACACGCGTC
TCAACCGCTGGATATCACCACCCCGCAGCAGCTCTGCCACAGGTGTAACT
GGTGCCTGGGGGCGCCAAGCCTCGGGCACCGCTTGATGCGGTGCGATCGC
TGCGACTGCGATGTCTGCGCGCTGTGCGTGGCGACAGTCCCAGCCCAGGA
GGTCAAGGTCCAGCGGGCGAAGGCAGCCGCACGCTCGGCGCAGCTGGCGG
CGAAGAAGACGGACACAGAGCAGGCGGAACGCCTCCTCCACGATATGTCC
ATCGGCGGGGCAACACCGGGGGGCCCGGGACCTCCCCACCCCCCACCCGC
AGGAGGGTTGCCGTCGCCGCCCCAGCCGCCCCTAACCTCGGCCCTTCCGC
CGCCGCCGTGCTACGGGGCGGTTGCGGCGGCGCCGTCACACGGCGGTCCA
CCCGCTGCTACGGCCGCGCAGCCGACCCCACCGTCGTACGGCGCGATGGC
GGGACCGTCATCATCGTCGGCGCCGGTGAGCTCTACGAACGGGCATGTCA
CCCAGGCGCCGGCGCTGCCGTCGTACAACGCGATGGCGGGGTCGTCGCCC
GCCGCCGCTGCACCTTCGTATCAAGACATGGCCGCCGCGGTTTCCGCGCT
CCCCGGAGGGAAGCAGCAGCAACCCCCGTCTTATTCCAGCTTTGCCCAGA
CCGGCGGGGGGGCAGAAGCAGCAGGGGAAGGGCGCGGCCCCAACCGGCTG
CCCCCGCCCGCATCCTGTAGCCCGGAGAGGGAGACACCGGCGCCGACGGC
TAGCGCCGCCAACGGGGCGGGTTCGCCGTTCGAGTTCGACTCCGTGGTGC
GAGTGCTGGGCGTGGAGGACCCGGAGGTGCAAGGGAAGCTCCTAACCGTC
ATCGGCTTTGAGGCGGCGGCAGATGGGGGGCCCGGGACGGTCGTGCTCCA
GAGGAGGGGCCGGGTTGTGAAGGCCCCTGCTTCCAAGGTGTACAGACTCA
CCGATTGAGTGTAACTGGTGCCTGGGGGCGCCAAGCCTCGGGCACCGCTT
GATGCGGTGCGATCGCTGCGACTGCGATGTCTGCGCGCTGTGCGTGGCGA
CAGTCCCAGCCCAGGAGGTCAAGGTCCAGCGGGCGAAGGCAGCCGCACGC
TCGGCGCAGCTGGCGGCGAAGAAGACGGACACAGAGCAGGCGGAACGCCT
CCTCCACGATATGTCCATCGGCGGGGCAACACCGGGGGGCCCGGGACCTC
CCCACCCCCCACCCGCAGGAGGGTTGCCGTCGCCGCCCCAGCCGCCCCTA
ACCTCGGCCCTTCCGCCGCCGCCGTGCTACGGGGCGGTTGCGGCGGCGCC
GTCACACGGCGGTCCACCCGCTGCTACGGCCGCGCAGCCGACCCCACCGT
CGTACGGCGCGATGGCGGGACCGTCATCATCGTCGGCGCCGGTGAGCTCT
ACGAACGGGCATGTCACCCAGGCGCCGGCGCTGCCGTCGTACAACGCGAT
GGCGGGGTCGTCGCCCGCCGCCGCTGCACCTTCGTATCAAGACATGGCCG
CCGCGGTTTCCGCGCTCCCCGGAGGGAAGCAGCAGCAACCCCCGTCTTAT
TCCAGCTTTGCCCAGACCGGCGGGGGGGCAGAAGCAGCAGGGGAAGGGCG
CGGCCCCAACCGGCTGCCCCCGCCCGCATCCTGTAGCCCGGAGAGGGAGA
CACCGGCGCCGACGGCTAGCGCCGCCAACGGGGCGGGTTCGCCGTTCGAG
TTCGACTCCGTGGTGCGAGTGCTGGGCGTGGAGGACCCGGAGGTGCAAGG
GAAGCTCCTAACCGTCATCGGCTTTGAGGCGGCGGCAGATGGGGGGCCCG
GGACGGTCGTGCTCCAGAGGAGGGGCCGGGTTGTGAAGGCCCCTGCTTCC
AAGGTGTACAGACTCACCGATTGA
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