Homology
BLAST of mRNA_L-elsbetiae_contig57.14083.1 vs. uniprot
Match:
D8LF02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF02_ECTSI)
HSP 1 Score: 57.0 bits (136), Expect = 1.280e-6
Identity = 30/57 (52.63%), Postives = 35/57 (61.40%), Query Frame = 1
Query: 130 SREEMAESRRTRCREWIDNANTDMKSW------VREPQPSVFKHTFRDRQSDAEIGP 282
SREEMA+S RTRC EW+DNAN DMKSW V P ++ R R+ EIGP
Sbjct: 24 SREEMAQSSRTRCCEWVDNANADMKSWAKIRGRVEHPHWEPPRYFLRPREKAKEIGP 80
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig57.14083.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 1.28e-6 / Id = 52.63 Sequence D8LF02_ECTSI
Match Name E-value Identity Description
D8LF02_ECTSI 1.280e-6 52.63 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Ec32 ortholog description hypothetical protein
Ec32 ortholog Ec-21_006200.1
Exons 3
Model size 462
Cds size 462
Stop 0
Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816608.9445024-CDS-L-elsbetiae_contig57:55672..55806 1622816608.9445024-CDS-L-elsbetiae_contig57:55672..55806 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig57 55673..55806 +
1691683682.1785278-CDS-L-elsbetiae_contig57:55672..55806 1691683682.1785278-CDS-L-elsbetiae_contig57:55672..55806 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig57 55673..55806 +
1622816608.9575348-CDS-L-elsbetiae_contig57:57480..57666 1622816608.9575348-CDS-L-elsbetiae_contig57:57480..57666 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig57 57481..57666 +
1691683682.187286-CDS-L-elsbetiae_contig57:57480..57666 1691683682.187286-CDS-L-elsbetiae_contig57:57480..57666 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig57 57481..57666 +
1622816608.9693112-CDS-L-elsbetiae_contig57:58060..58202 1622816608.9693112-CDS-L-elsbetiae_contig57:58060..58202 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig57 58061..58202 +
1691683682.195665-CDS-L-elsbetiae_contig57:58060..58202 1691683682.195665-CDS-L-elsbetiae_contig57:58060..58202 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig57 58061..58202 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig57.14083.1
>prot_L-elsbetiae_contig57.14083.1 ID=prot_L-elsbetiae_contig57.14083.1|Name=mRNA_L-elsbetiae_contig57.14083.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=154bp
MFSLRTQEKLDAERNQNSSREILWKHLNDKNKSGRMVRRIYNKSREEMAE SRRTRCREWIDNANTDMKSWVREPQPSVFKHTFRDRQSDAEIGPANGHVS SRKYIPRLVFSGGGELDKEKTADLVETLMEPSQMRGNDPKALQNPCRPTV IVTD back to top mRNA from alignment at L-elsbetiae_contig57:55673..58202+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig57.14083.1 ID=mRNA_L-elsbetiae_contig57.14083.1|Name=mRNA_L-elsbetiae_contig57.14083.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2530bp|location=Sequence derived from alignment at L-elsbetiae_contig57:55673..58202+ (Laminarionema elsbetiae ELsaHSoW15)ATGTTCTCTTTGAGAACGCAGGAGAAGCTGGATGCTGAACGCAACCAAAA
CTCCTCGCGTGAAATACTATGGAAACACCTGAACGACAAGAATAAGTCGG
GCCGCATGGTGCGCCGAATCTACAATAAGTCCAG GTGTGTTTGTTTGGTG
CAGGACTAATTGGCGGTAGGCAGAGTAGCACCCCTACTTTCAGATACGTC
ATGCTTTTCGTGCGACCGGAGAATCCAGAACGACAGCTCACGGTCGCGTG
CAATACATGTTGTTGTTGTTGTCTTCACATTAGAATGAAAAAACGTTCTG
ATCTCTCTATCAAGTACACCCCCATGAGACCGTGTACTAATCCAACACTG
ACGCGGTCAATTCCCGTGGTCACAGGATAACTTACCCTAAAAGGGTATAG
TATAGACTACTGAAAAATAAAAATAAATAAAACGGACCCGAGGGGCCCAC
AAAGCACAAAACAAAAGATGAGATATTCATAGTCTTGTGGGTACCACCCT
CATAAAGGTACCACATAAAGGTATCAACCTCATAAAGGGGTCGGATCACA
CTAACGTCTGTCGAGGACAAAACCCTATTTTCCACAATGGCGTCGACGAT
TAGATACTGGGATATGGTGGACAACGTCCCGAGTTCGAATCTCTCCATCA
AGATTTCTTTTTCAGGAAAAAAAACTCTCTTGGAAAAAAAAAAGAAACAA
AATGGGGGATAGAAACCAAGACCCGATAATCGAACTCGTGACTTCTAAGC
GCTGTGGCGGAAGTGGCGAACCCGCTAAAACACGCACAAAGAAGAATGTT
GGAAAAAGATGGTGGACGTACCACCCTCATAAAGGTACCACATAAAGGTA
TCAACCTCATAAAGGGTCGGATCACACTTACGTCTGTCGAGGACAAAACC
CTCTTTTCCACAGTCTAGATATATCTAGATAGTCTGGAGCCCTCCGCTCC
CATCTACACGCTATGCGAGGTGAAAAAAAAAGTGGACAAGCCAACATCAC
CAACCGCGGAGGGATGCGCCCCCTGGTTCTATCTTGGTTCCCCAAACAAT
GCCGGGGTGTTCCGCGCCGGGTTCTCGCCGGCCAGGCCACCGATCTACAT
ATATATCCTCCCCATCTCGTACCGCACCCATGATACAGTAAGAGGGAAAG
AACATCGGATAATAAACAAGCCAACATACAAACAAAACAAACAAACAAAC
ACACATAAAAACCCCAGACAAACAAACACCTCATCGCTCCCCCGGCGGTG
TTGCAAGATAGTACAGCAGTGGGAGGTGGGAGATTAGTCAAGAGTTCATT
CCGCAACATGTCGCGCTACCTCCTCCGCCTCCGCTCTCTTGTATGCGTCG
AGCACCGTTTCGATGGCCTCCAGTTCCTTTCCCCCGCTGGTTGTTGCCGC
ATATATTTTATTGCTGGGCCCTTCTTTGTCTCGTTTGATTGCCCGTTGCA
GGCTAGCCTCCTTCTCCTTCTTGTGCCAGGAGGCCATAAACCCCTCAGCT
CCCCGCAGCACCTCCTCGTGCCATGCCCTTCCCTCTTCCACCTTCGCTGT
TGTCTCCCAGTCGGCGCTGGGAATTTCGAACGCCTTGAAGTCTTCCTTCA
GGCACATCTCCCAGACTATGTCTAGTCTACAATACGAATCTGTAGACTAT
CTATCTAGTCTAGATTATGTGGTCGATGGAGAAGACTACATGCGTATCCA
GTTTATCTACATTTGTGCATGCTGTACTGCAGAATGTGCATTCCAGGCGA
GGAACATTGCAGGTATGTACAATGTTTGACCCCGGTCAGCAACTGGATCC
TCGTGCAGGGAGGAGATGGCAGAATCTCGTCGGACCAGGTGCCGCGAATG
GATTGACAATGCAAACACCGACATGAAGAGCTGGGTCAGGGAACCGCAGC
CATCGGTGTTCAAGCACACTTTCCGTGACAGGCAGTCGGACGCGGAGATT
GGTCCAGCGAACGGGCATGTGTCGAGTCGCAAATACATACCAAG GTGCAG
TGTTCATACTTCTAACACAACACAGAGACTTTGCGGTGTACGAAGGAGGA
CGCCATCCTTGTTTTTGCTGTGCGATTTGTGACCGAAACACACGGTGATG
CAAGAGGTTCAGCTAGAAATATCAACACATAGATGGCACGCCCCCAAAGA
CAACTCCGCAGGGGAGGTTTTGAACTTTCTATTTTTTTATTTTTGTCTTT
AACTCCATAATATTTGAGGTGTTTTTCTACCCGGCCGGACCAATACTACA
TTATGTACATAACTGTTTTGAACTGTCAATTCACCATAGAGTCCCATCTC
TAGTCGAGATTAATGTAGGGAGGTTATTTCTTTGATTTCTTGATTTATTT
TCAAAAGTGGCCTATTTCCATCCATTCCTCTTGAACAGATTGGTCTTCTC
AGGAGGCGGTGAGCTCGACAAGGAGAAAACAGCTGACCTCGTGGAGACGC
TGATGGAACCGAGTCAAATGCGCGGAAACGATCCAAAAGCGTTGCAGAAT
CCCTGTCGTCCGACGGTGATCGTTACTGAT back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig57:55673..58202+
>mRNA_L-elsbetiae_contig57.14083.1 ID=mRNA_L-elsbetiae_contig57.14083.1|Name=mRNA_L-elsbetiae_contig57.14083.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=924bp|location=Sequence derived from alignment at L-elsbetiae_contig57:55673..58202+ (Laminarionema elsbetiae ELsaHSoW15) ATGTTCTCTTTGAGAACGCAGGAGAAGCTGGATGCTGAACGCAACCAAAA CTCCTCGCGTGAAATACTATGGAAACACCTGAACGACAAGAATAAGTCGG GCCGCATGGTGCGCCGAATCTACAATAAGTCCAGATGTTCTCTTTGAGAA CGCAGGAGAAGCTGGATGCTGAACGCAACCAAAACTCCTCGCGTGAAATA CTATGGAAACACCTGAACGACAAGAATAAGTCGGGCCGCATGGTGCGCCG AATCTACAATAAGTCCAGGGAGGAGATGGCAGAATCTCGTCGGACCAGGT GCCGCGAATGGATTGACAATGCAAACACCGACATGAAGAGCTGGGTCAGG GAACCGCAGCCATCGGTGTTCAAGCACACTTTCCGTGACAGGCAGTCGGA CGCGGAGATTGGTCCAGCGAACGGGCATGTGTCGAGTCGCAAATACATAC CAAGGGAGGAGATGGCAGAATCTCGTCGGACCAGGTGCCGCGAATGGATT GACAATGCAAACACCGACATGAAGAGCTGGGTCAGGGAACCGCAGCCATC GGTGTTCAAGCACACTTTCCGTGACAGGCAGTCGGACGCGGAGATTGGTC CAGCGAACGGGCATGTGTCGAGTCGCAAATACATACCAAGATTGGTCTTC TCAGGAGGCGGTGAGCTCGACAAGGAGAAAACAGCTGACCTCGTGGAGAC GCTGATGGAACCGAGTCAAATGCGCGGAAACGATCCAAAAGCGTTGCAGA ATCCCTGTCGTCCGACGGTGATCGTTACTGATATTGGTCTTCTCAGGAGG CGGTGAGCTCGACAAGGAGAAAACAGCTGACCTCGTGGAGACGCTGATGG AACCGAGTCAAATGCGCGGAAACGATCCAAAAGCGTTGCAGAATCCCTGT CGTCCGACGGTGATCGTTACTGAT back to top