mRNA_L-elsbetiae_contig5694.14067.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5694.14067.1
Unique NamemRNA_L-elsbetiae_contig5694.14067.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5694.14067.1 vs. uniprot
Match: D7G168_ECTSI (L-ascorbate peroxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G168_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 2.330e-6
Identity = 43/59 (72.88%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:    1 MKVVAACVAAAVAVDCASAFVAPVVSSSFASSSLSRSS-RARAPG-LRMST-VSAESKV 168
            MK  AACV A  A+DCASAFVAPVV+SSFASSSLSR+S R+RAPG LRMS+ VS ++KV
Sbjct:   35 MKAFAACVTAVAALDCASAFVAPVVTSSFASSSLSRTSARSRAPGVLRMSSAVSTDAKV 93
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5694.14067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G168_ECTSI2.330e-672.88L-ascorbate peroxidase n=2 Tax=Ectocarpus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5694contigL-elsbetiae_contig5694:7142..8063 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size681
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5694.14067.1prot_L-elsbetiae_contig5694.14067.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5694 7472..8063 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816607.248183-UTR-L-elsbetiae_contig5694:7141..74711622816607.248183-UTR-L-elsbetiae_contig5694:7141..7471Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5694 7142..7471 -
1691683680.9113946-UTR-L-elsbetiae_contig5694:7141..74711691683680.9113946-UTR-L-elsbetiae_contig5694:7141..7471Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5694 7142..7471 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816607.2642536-CDS-L-elsbetiae_contig5694:7471..76571622816607.2642536-CDS-L-elsbetiae_contig5694:7471..7657Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5694 7472..7657 -
1691683680.9227479-CDS-L-elsbetiae_contig5694:7471..76571691683680.9227479-CDS-L-elsbetiae_contig5694:7471..7657Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5694 7472..7657 -
1622816607.2752461-CDS-L-elsbetiae_contig5694:7898..80631622816607.2752461-CDS-L-elsbetiae_contig5694:7898..8063Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5694 7899..8063 -
1691683680.9340632-CDS-L-elsbetiae_contig5694:7898..80631691683680.9340632-CDS-L-elsbetiae_contig5694:7898..8063Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5694 7899..8063 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5694.14067.1

>prot_L-elsbetiae_contig5694.14067.1 ID=prot_L-elsbetiae_contig5694.14067.1|Name=mRNA_L-elsbetiae_contig5694.14067.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
MKVVAACVAAAVAVDCASAFVAPVVSSSFASSSLSRSSRARAPGLRMSTV
SAESKVILPHLLNQRVFSLLREKINLFWPHPGQRRIFLHLNSALSLTARH
VHEANMRRKGRATIDA*
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mRNA from alignment at L-elsbetiae_contig5694:7142..8063-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5694.14067.1 ID=mRNA_L-elsbetiae_contig5694.14067.1|Name=mRNA_L-elsbetiae_contig5694.14067.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=922bp|location=Sequence derived from alignment at L-elsbetiae_contig5694:7142..8063- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGGTTGTAGCTGCTTGCGTCGCTGCCGCGGTGGCGGTGGACTGCGC
GTCTGCTTTTGTAGCGCCTGTGGTGTCGTCTAGCTTTGCTAGCTCCTCGC
TGAGCCGCTCCTCCCGAGCTCGTGCTCCTGGTCTGCGTATGTCGACCGTG
TCTGCTGAGTCAAAGGTGAGGTAACGGGAGAGAGAGAGAAAGAGAGGGAT
GGTTGTAAGGGTGGTAGGTGTCCGTGAGTTGAGGAGCTGTCGTGCCTTGT
CATGGAGACAGTTGGCAGGTGCAAGAGAGTTGTGTGCAATGACGTTTATG
AGTCAGGGTGGTCTGTTTGTTGTTGCTTCGCACAAGGGTCATGCAAACTT
CCCCTGCTGCTGTTTATTATTTTCCCGTCCTGTTTCCACGACCCCAAAAT
CAGCAGGTCATCCTGCCGCATTTGCTCAACCAGCGTGTGTTTTCTCTTCT
GCGTGAGAAGATTAACCTCTTTTGGCCCCATCCCGGCCAGCGGCGCATTT
TTCTTCACCTGAACTCTGCGCTTTCTCTTACAGCCAGACATGTTCATGAG
GCGAACATGCGAAGGAAGGGCAGGGCAACAATTGATGCTTGATCTCGCTG
ATGACGACAAAAGTTGCTGCGACGCAGTCGTTGGGAATTTCCCTGGTGTA
GGGCCGTAGCTCCCGTATCGGAAGATTACGGGTTTGTTTTGGCGCGTGCA
GACACACGTTGCCGACAACCAACTAGTACAACCAACCCATCAGATCGAAG
ATTCCTATTCGCCCCGCCGGAGATCAAATTTACCTGGGAAGACTCTCCAC
GCCTCTCCCGCGCGTATTTCTGGAAACGGATCTCCTACGCACAAGGGTTT
TTGAAACAACCTAGTCTCAGGGAAACAGTTGTGTGGCTCTGGCTGTCCGC
CCTGTAGTGCTGCAGTACGCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5694:7142..8063-

>mRNA_L-elsbetiae_contig5694.14067.1 ID=mRNA_L-elsbetiae_contig5694.14067.1|Name=mRNA_L-elsbetiae_contig5694.14067.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig5694:7142..8063- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGGTTGTAGCTGCTTGCGTCGCTGCCGCGGTGGCGGTGGACTGCGC
GTCTGCTTTTGTAGCGCCTGTGGTGTCGTCTAGCTTTGCTAGCTCCTCGC
TGAGCCGCTCCTCCCGAGCTCGTGCTCCTGGTCTGCGTATGTCGACCGTG
TCTGCTGAGTCAAAGATGAAGGTTGTAGCTGCTTGCGTCGCTGCCGCGGT
GGCGGTGGACTGCGCGTCTGCTTTTGTAGCGCCTGTGGTGTCGTCTAGCT
TTGCTAGCTCCTCGCTGAGCCGCTCCTCCCGAGCTCGTGCTCCTGGTCTG
CGTATGTCGACCGTGTCTGCTGAGTCAAAGGTCATCCTGCCGCATTTGCT
CAACCAGCGTGTGTTTTCTCTTCTGCGTGAGAAGATTAACCTCTTTTGGC
CCCATCCCGGCCAGCGGCGCATTTTTCTTCACCTGAACTCTGCGCTTTCT
CTTACAGCCAGACATGTTCATGAGGCGAACATGCGAAGGAAGGGCAGGGC
AACAATTGATGCTTGAGTCATCCTGCCGCATTTGCTCAACCAGCGTGTGT
TTTCTCTTCTGCGTGAGAAGATTAACCTCTTTTGGCCCCATCCCGGCCAG
CGGCGCATTTTTCTTCACCTGAACTCTGCGCTTTCTCTTACAGCCAGACA
TGTTCATGAGGCGAACATGCGAAGGAAGGGCAGGGCAACAATTGATGCTT
GA
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