mRNA_L-elsbetiae_contig569.14057.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig569.14057.1
Unique NamemRNA_L-elsbetiae_contig569.14057.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig569.14057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig569contigL-elsbetiae_contig569:2334..8101 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons11
Model size884
Cds size435
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816606.7235303-UTR-L-elsbetiae_contig569:2333..24571622816606.7235303-UTR-L-elsbetiae_contig569:2333..2457Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig569 2334..2457 -
1691683680.5716088-UTR-L-elsbetiae_contig569:2333..24571691683680.5716088-UTR-L-elsbetiae_contig569:2333..2457Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig569 2334..2457 -
1622816606.7344737-UTR-L-elsbetiae_contig569:3044..30831622816606.7344737-UTR-L-elsbetiae_contig569:3044..3083Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig569 3045..3083 -
1691683680.5816755-UTR-L-elsbetiae_contig569:3044..30831691683680.5816755-UTR-L-elsbetiae_contig569:3044..3083Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig569 3045..3083 -
1622816606.745504-UTR-L-elsbetiae_contig569:3647..36881622816606.745504-UTR-L-elsbetiae_contig569:3647..3688Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig569 3648..3688 -
1691683680.5924096-UTR-L-elsbetiae_contig569:3647..36881691683680.5924096-UTR-L-elsbetiae_contig569:3647..3688Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig569 3648..3688 -
1622816606.7565572-UTR-L-elsbetiae_contig569:4802..49251622816606.7565572-UTR-L-elsbetiae_contig569:4802..4925Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig569 4803..4925 -
1691683680.6068416-UTR-L-elsbetiae_contig569:4802..49251691683680.6068416-UTR-L-elsbetiae_contig569:4802..4925Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig569 4803..4925 -
1622816606.7670276-UTR-L-elsbetiae_contig569:5333..53731622816606.7670276-UTR-L-elsbetiae_contig569:5333..5373Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig569 5334..5373 -
1691683680.61602-UTR-L-elsbetiae_contig569:5333..53731691683680.61602-UTR-L-elsbetiae_contig569:5333..5373Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig569 5334..5373 -
1622816606.8552396-UTR-L-elsbetiae_contig569:7254..72851622816606.8552396-UTR-L-elsbetiae_contig569:7254..7285Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig569 7255..7285 -
1691683680.6823478-UTR-L-elsbetiae_contig569:7254..72851691683680.6823478-UTR-L-elsbetiae_contig569:7254..7285Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig569 7255..7285 -
1622816606.8654485-UTR-L-elsbetiae_contig569:8050..81011622816606.8654485-UTR-L-elsbetiae_contig569:8050..8101Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig569 8051..8101 -
1691683680.6917102-UTR-L-elsbetiae_contig569:8050..81011691683680.6917102-UTR-L-elsbetiae_contig569:8050..8101Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig569 8051..8101 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816606.7774048-CDS-L-elsbetiae_contig569:5373..53881622816606.7774048-CDS-L-elsbetiae_contig569:5373..5388Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig569 5374..5388 -
1691683680.6265585-CDS-L-elsbetiae_contig569:5373..53881691683680.6265585-CDS-L-elsbetiae_contig569:5373..5388Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig569 5374..5388 -
1622816606.787609-CDS-L-elsbetiae_contig569:5401..54741622816606.787609-CDS-L-elsbetiae_contig569:5401..5474Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig569 5402..5474 -
1691683680.636213-CDS-L-elsbetiae_contig569:5401..54741691683680.636213-CDS-L-elsbetiae_contig569:5401..5474Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig569 5402..5474 -
1622816606.8062444-CDS-L-elsbetiae_contig569:5833..59681622816606.8062444-CDS-L-elsbetiae_contig569:5833..5968Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig569 5834..5968 -
1691683680.6453261-CDS-L-elsbetiae_contig569:5833..59681691683680.6453261-CDS-L-elsbetiae_contig569:5833..5968Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig569 5834..5968 -
1622816606.8202746-CDS-L-elsbetiae_contig569:6490..65831622816606.8202746-CDS-L-elsbetiae_contig569:6490..6583Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig569 6491..6583 -
1691683680.6538045-CDS-L-elsbetiae_contig569:6490..65831691683680.6538045-CDS-L-elsbetiae_contig569:6490..6583Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig569 6491..6583 -
1622816606.8331432-CDS-L-elsbetiae_contig569:6802..68541622816606.8331432-CDS-L-elsbetiae_contig569:6802..6854Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig569 6803..6854 -
1691683680.662587-CDS-L-elsbetiae_contig569:6802..68541691683680.662587-CDS-L-elsbetiae_contig569:6802..6854Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig569 6803..6854 -
1622816606.8439424-CDS-L-elsbetiae_contig569:7187..72541622816606.8439424-CDS-L-elsbetiae_contig569:7187..7254Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig569 7188..7254 -
1691683680.6735296-CDS-L-elsbetiae_contig569:7187..72541691683680.6735296-CDS-L-elsbetiae_contig569:7187..7254Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig569 7188..7254 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig569.14057.1prot_L-elsbetiae_contig569.14057.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig569 5374..7254 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig569.14057.1

>prot_L-elsbetiae_contig569.14057.1 ID=prot_L-elsbetiae_contig569.14057.1|Name=mRNA_L-elsbetiae_contig569.14057.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=145bp
MRFVRVAAVLSAICIDKIRAVAGESTCLSDGRCILGTSTLNLCNCDLEDN
DMDGIAECIADSQSAGTLQVLRICNNFLTYLASDVLQGLPQLERLHLNEN
NLTEVPSLHFEHLFYLRLDNNYISSLESDAFQGTPKIEQLTTSP*
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mRNA from alignment at L-elsbetiae_contig569:2334..8101-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig569.14057.1 ID=mRNA_L-elsbetiae_contig569.14057.1|Name=mRNA_L-elsbetiae_contig569.14057.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5768bp|location=Sequence derived from alignment at L-elsbetiae_contig569:2334..8101- (Laminarionema elsbetiae ELsaHSoW15)
CCCGAGCAACACCTGATCTCGCTCTCGCCCCCTTTCATCGGCAGCTAAGA GGTGGGTACATGCAGGAAATGTGTCGCCCGGTTTCAATGAAACATTACTC TACAACAGGTCTATACATCCCTCCGTAGTCTATCTACACATTATCTACCA AGTCTAGATACAAGTTTTGAACTTGCCTTGCAACAGCATCCCCTTTACCA AACCGGCGCAACAGCAAAAATACTACAGCCATGCGTCGCTTTTAAGCCTG CAGTCGACTTCGCACACAACGGAACTGGCCGTCTCGTGTTAGCAACTCGG CAGATATGTAGGGCCTGATCCCAAAGTCACTTCGCGCCGCCGCTTCTTAC ATCGCTGTCTCAGTGCAGCCTCCGCTTCATCATCTGTCAATTCCACTTCG AACATGTGTCCACATTGGCTTGCCACCATAGGTAGCGCCAAGGCTAGGCA ATACGCTCCCTTTTTACTCCCTTCAGCGCATTTGTGAACCTTGAATCCCC ACAAGTTTGAGAACAGTAGACTATGGAGCTCATAAAGTTCGGTTTCGAGA CGAATACTATAATAGACTAAAATACTGCAGAAACGAGTGCCGCTCTGACA CATGTATGTAGGCACTGCTGTCGACTAACCGATGAAAGGAAAACCAAGCA TGTGTGGGCGTGATTCGTCACCACGTGTCCGACAGGTAGACTACCTAGAT ATTTTTATCTTAGCTCTAGTCTAGACTAGATATCTAGATAATAGACAGAT AATCCGCGCGTATTTATGTTCCTTTATTCCGTTCGAAATGTCCACCCTTG CAAATCGTTCCGCCAGGGTGGATAATCTTGCGACGAATAATAAAATAATG CGGTTCGTCAGAGTCGCTGCGGTTCTCTCGGCGATATGCATTGACAAAAT CCGTGCAGTCGCAGGTGAGGTGTAGGGGAAATATGTAGAAGTATGTAGGT AGAAGTATCACATGACGCGCTGCCTTCTTCGTGACGTTCGGTTTGGTCCT ACCCGTCAAAATGCGTTTTTGTGGCTGAGATTACAGCAAACTGTCAGGAT AGTGCGTTCCGAATCATCTAAGATTCTCTCAAGCACAGGTTGCGCCAGAT CGGATAGCTTTGACAAATACTCTCGGGTGTTGCGAACAAATGCTGCTGGG TATCTCTTCAGCACAAACCATGCATGATGCCCCAAATAAAAACTAACACC GCTTTGTGCCGCACTCGCTACGATTGTTTGGCTCGTATCGTTCTCAGGAG AAAGTACCTGCCTCTCCGACGGTCGTTGCATTTTAGGCACCAGTACCCTG TGAGTGCACGTGTTTCTTGCGGTTTTGCGCCCCCTGAGTCTGCAGGCCTC CGTTGTACCCATCCGACGAGGCCGGATCCTTATCTACATCGATGCAACAC CCCTTGAGTTTTCCATATCTGGCGTCTGTACTGAAAACAGCCGTCGACAT GACCTCCTTCGCCCCGGAAGTGGCATCCTATAACGGCTGTTCGGGACCGC CCTGCTTTCTGCCCTCAGGAATCTTTGTAACTGTGATCTCGAGGATAATG ACATGGATGGCATCGCTGAGTGTATTGCCGATTCACAGAGCGCCGGCACT CTCCAAGTCCTGTGAGTTGGCCCTGAAGAATGGCTTTTGGGAAATGGAAA CACGTAGGTAAAATCAGCTAAATAACTGCTCCAGCATAGACTGAAAAAGA CAACAATGCAACACGCCTTTCAGCCCAAGTAACCCTCGAAACGCCTGATG AGGGGGGGGTGGTACAACAGCGCGAGAACAAAGATTCGACAAAGTGAAAG GAGTTTGAACAACGTTTCTAGCGAAATCAGTGCGCAGTGTTTAACGTAAA TACACGAGATCGGTAGGGAGCGGCCCGTCCCGTTAGCCTTGACCGTTGGC GCTGGTCTTGACCGTTGGCGCTGGTCTTGACCGTTGACGTGGAGCCCGTG TTTGGCGCATGGAAAGAGATATCACTGACACAACAAATTCCTGATTGTTT TGGAAGAAGCATCCAGGTGAATGGTTTCAAACTCTCTGCAATGCCCGTGT ACAGGGAGTGGAAATCGCAGCAAACGCAAACGACTCCTAGCGTCCGTGTT TTCATTCGCTTGCTGCTTGTTTTTTCTTGCCAGGCGAATATGCAACAACT TTCTGACCTACCTGGCGAGTGACGTCTTGCAGGGTCTCCCACAACTCGAG CGTCTGCACTTGAACGAGAATAATCTTACCGAGGTCCCTTCGTTACACTT CGAGCATCTCTTCTATTTGTAAGTTGTGCGAGCGTGGGATCGCAAAGCGG CGCGTCTGCACCACGATTGATAGATGAGGTGCTCGATTTGCTTCGACGCC GTACCATTAACCCGGTCGGTGACTCCTTTGATTAATTGTTTTCCTTGAAG TGAAAGGGCTACAACCCTTGGAGATCCGTTGTCCATACACAGCGCGCTAA CATTCTGCAGATGCCATCAGTACCATGACCTCCAAAAGGCATCTACCGCA TCCTCTGCGCAGAGAACGGTATTTACCGGTCTTCCGTGTGTCCCAGTCTA ACGTGAAAATAATATTAAAGTATCTTTGCCCGAGTCGCCGACGCCTCAAT AAACTGAACTGTCTCTCCTTGAATCAGGCGCCTCGACAACAACTACATTT CCTCCTTGGAAAGTGACGCCTTCCAGGGCACCCCGAAAATTGAGCAGCTG TTTCTGGGTGCAAACGACATCGCCGTAATCCCGGAACATGTCTTGGAATT CCCGAACCTCTTCTACCTGTTAAGTACCCCGGCTTTCGTTGCCTTTGAAA GTAAAACCTTTTCCGTGTATCGCTCCCCTATCGTGCATTTTGAACGCTGC TCTTTTCCATCGTGGGGTTGTTCATCGGTAAGCGCGTACCATATAATGTT GGTGGAAACGTAATTTATTGAGTAGATTGGACGGGTCGAAGGGTAGAATT AAGTGTTCGGATGAACAATAGACATCTGCGCCCGTTCAAAGGTTGAGAGG TTTTGTTCCTTGCTAAGCTTTGCGGCCTCGCGTTGGACAAAGCTCACGCT CCACAGTCACTTTCTAGGGTAAACGTGAACGCCAGTTTTGACGTCGTCGC CAACATGCAAGCTGACTGTTCCTGCCGGGCTGTGCTCGGTGCGTACGTTT CATTCTGCGGGTGGGGCCACACACAGTGACCTCCATGACAACAAGTTGAT CTCGTTCCCGAGTGACGTGCTCGAGGAAACGAGCGCGCCAATTTTGTACC TGTTTCTGACGGGGAACCCTGATCTAATCTGCGCTCCCACAAGCATACGG TGAGTAGTGCCCTCCAACGGCTGCTAGGCAGAGACACATGAAGCACGCGC CGGGAGCGACCGGTGTCCAGACATCGTTATCTTGGCGCATTTGTTTCCGG ATACAGATACTTCGAAGTATGTGAGAATTTCACACAATAAGTATCATGCT TATTAACCGCGAACGGAAAGGCAGGATGAAAACTACATGCGTGTGGAGGG TAGGCGGTTCATCACGCGAGAAGCTCCGCGCAAAAGCAGAGTAGTAGAGC TGCAGAAGGCATTTGGAGGTATGGTCCGTGCACAACAATTTGTCCAAAAT TTCCCCAGCACGGATGACAACTTTTCTCTGGACACAGGTGGTTGTTCCGA AATCCGAAAGTACCGGCAAACGCCCTGTCTTCAGGCGCACAACCTGACGG GGAGTTTTTTTTTTTTTTCTTCCTTGAATTTTTATCAAATAATAACCGGG AAAACTTGTTTCGTTTACAGAGGGCGGGGTTTTTTGCCGATTCGAAAAAA CTCAACGGATTTGGACAGATCTCGGTATTTGCCAGGTGGGTATTTTTTGT TTTTTGAAAATGTTTTGAAATGGCGTGGATATCAACCAAAAACCGAATCT GAAGGGTGAAGTTGTTTCGTTTATAGCGCGATAACTAGCCGTACGATTTC AAAATAGAGTGCGGCAAACGATTCCTCTCGTCAATCCCGAGGTGGATATT TGTTTTTTTGTCTGGGAAAAATCGGGTTGCCGAGAGAACCCACATTTAGT TTTGCAGTCATTATTCAGTATAGTTTGGGGGTTCAGCGGTTTCCGGTGGG GCTCCGTGATATCGAAGGGGTTTCGTGGCAAGTAAAGGGGGCTCCTTGAG TCGAAAATCGGCCGAAAATGTTGCATTTCGCCAAAATTAAAAAAACTCTG CAGCTATCGACGCAGTTTTTCGGGGTGGTCACGAATATCGTTGGTTCACA TTACAAATATGTTTCTAACAAAAGTTATCGCACACAACGCGATTGACAAA TTGTTGTGCACGGACCATATGTAGTGGCGAATCTGTTAGATGCGCACTAT TTGGTCCACGGCCTTTTTTCTCGCCTATCGGCCCTGCAACCATCCCTTGT TTGCTCTTGTCAGGGAAAGCTACATTCACGTGGATGAGGGAATCGAAGAT TGCGGTGAGAGATTAACTGCAGTTCAGTTCTGTTGTGCGGTGTACGCAGC GCACAACCTTCATTTGTAGATGTGATAAGCATTCTAGTCATTCATGCAAT TTTGTTATTCGTGTGTCTGTTGCAGTTGCTCTAGGCAAGGGCAAGTATAG ATATGACACTTTTTATAGAAAAGTGAAAATTAAAGTGTCAGTAGATATGT CGTTCAAACATTGACCTTCCTCGAGCCGCGACCGTACACAGTTCCCATCC CAACAGCTACCTGGTATTGATTACTCGGAGTATTTTCCTCGTGGACTGGA ATTTTGTGTTCGCTGCCAGCATAGGAAATAATATGTGTTATTTTGAATAT GAGTAACCGCATCAAGTGGACCGAGAGAAACTTGATAGCCGAGCACAAAT AAGAATCTCTCTTATTCTAAACTGAAGCAACTGCATTAAGTTGGCTGAGA GAAACCTGACAGCCGTTTACATTCGTTCATTGAACAACGCGAGTGGGTCT TAACGGCCTGTGTTGCGCTTGCCACGCCGTCTTTTTGCAACCTCATCGTG GGGCTGGCTGGTGTACAGCTCCCCCTACTCCGGCGCCCTCAACAGCACCC ACGCCAGGTGAAGCTCGTTTCCGTACAACACTGTGGCCTACGCGTATGCA TGTATCTACATGTGTCGATTGTTTTCTCGCCACCTGTTTGATCTACGGCT TTGATGTTCAATGCGGCAGATGTATTCTTCAACCTTTCCGGCAGGTGCAG CCAAATAGCTCCCGAGCATTGGCAATATCGTGGCTTGCTGCTGCATATTG TTCCCCTCGAGGGCTACCTGTAACTAAAAGACGCCGTGTGCGTCGGTAAT CATGCCTGGGAGATGTTGGTCGCAACAGGCTTCGGCAAAGAGTCCTTCAG GGATGCATCAATTTTCTCCCGTAGTTTTTACTTTGAGCTTTTCCAACTTT TACTTCCCATCAATGACTGTACACTTTGACACATACATACATGCCGTAGC AACGTTCCTGGTGACATGGTCGCGAGCAGCACTCGCACTGTTGTCTCAGC CATATATAAAAAATACTTACTAAATGTAATACATGCGTCCAACCTGTTCA AAAGTCGTTTAGGGGGTGGACTGTTGAAGACACACTTTTATGTTCCATCT CTCGAGCCTTCGAAACTGATTAGAACTCTGCACCTGAAACCCAGGTCCTG ACACATGCAGCAACCTTGGAATCGACGGAATCGACGGTGGTAACAACGCC GGCTCGTGCTGCTGTCCGACAGGGTGTGGCATGTGTGGCGGGACGGGGTG CCGAAAATTTGGTCTGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig569:2334..8101-

>mRNA_L-elsbetiae_contig569.14057.1 ID=mRNA_L-elsbetiae_contig569.14057.1|Name=mRNA_L-elsbetiae_contig569.14057.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=870bp|location=Sequence derived from alignment at L-elsbetiae_contig569:2334..8101- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGTTCGTCAGAGTCGCTGCGGTTCTCTCGGCGATATGCATTGACAA
AATCCGTGCAGTCGCAGATGCGGTTCGTCAGAGTCGCTGCGGTTCTCTCG
GCGATATGCATTGACAAAATCCGTGCAGTCGCAGGAGAAAGTACCTGCCT
CTCCGACGGTCGTTGCATTTTAGGCACCAGTACCCTGAGAAAGTACCTGC
CTCTCCGACGGTCGTTGCATTTTAGGCACCAGTACCCTGAATCTTTGTAA
CTGTGATCTCGAGGATAATGACATGGATGGCATCGCTGAGTGTATTGCCG
ATTCACAGAGCGCCGGCACTCTCCAAGTCCTGAATCTTTGTAACTGTGAT
CTCGAGGATAATGACATGGATGGCATCGCTGAGTGTATTGCCGATTCACA
GAGCGCCGGCACTCTCCAAGTCCTGCGAATATGCAACAACTTTCTGACCT
ACCTGGCGAGTGACGTCTTGCAGGGTCTCCCACAACTCGAGCGTCTGCAC
TTGAACGAGAATAATCTTACCGAGGTCCCTTCGTTACACTTCGAGCATCT
CTTCTATTTGCGAATATGCAACAACTTTCTGACCTACCTGGCGAGTGACG
TCTTGCAGGGTCTCCCACAACTCGAGCGTCTGCACTTGAACGAGAATAAT
CTTACCGAGGTCCCTTCGTTACACTTCGAGCATCTCTTCTATTTGCGCCT
CGACAACAACTACATTTCCTCCTTGGAAAGTGACGCCTTCCAGGGCACCC
CGAAAATTGAGCAGCTGGCGCCTCGACAACAACTACATTTCCTCCTTGGA
AAGTGACGCCTTCCAGGGCACCCCGAAAATTGAGCAGCTGACGACATCGC
CGTAAACGACATCGCCGTAA
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