mRNA_L-elsbetiae_contig5670.14029.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5670.14029.1
Unique NamemRNA_L-elsbetiae_contig5670.14029.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5670.14029.1 vs. uniprot
Match: D7G4Z5_ECTSI (Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4Z5_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 4.300e-52
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 1
Query:    1 VDDHGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 237
            +DDHGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG
Sbjct:   14 MDDHGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 92          
BLAST of mRNA_L-elsbetiae_contig5670.14029.1 vs. uniprot
Match: A0A835YST4_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YST4_9STRA)

HSP 1 Score: 130 bits (326), Expect = 9.410e-38
Identity = 59/79 (74.68%), Postives = 68/79 (86.08%), Query Frame = 1
Query:    1 VDDHGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 237
            +DDH EMR DAQ WAAAAIES ++EK IS+ IK + + KYGPTWHCIVGTDFKA+VTHE+K F+FFYHGKMA CLYKAG
Sbjct:   14 MDDHSEMRTDAQAWAAAAIESHAEEKAISKDIKGRMDDKYGPTWHCIVGTDFKAYVTHETKTFMFFYHGKMAICLYKAG 92          
BLAST of mRNA_L-elsbetiae_contig5670.14029.1 vs. uniprot
Match: A0A7S2V5R3_9STRA (Dynein light chain (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5R3_9STRA)

HSP 1 Score: 126 bits (317), Expect = 7.090e-36
Identity = 57/79 (72.15%), Postives = 69/79 (87.34%), Query Frame = 1
Query:    1 VDDHGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 237
            +D+HGEM+ DA+N AAAA+E   +EK+ISR IK+ F+ KYGPTWHCIVGTDF+AFVTHESKHF+FFY GK+A CLYKAG
Sbjct:   53 MDEHGEMKNDAKNVAAAAVEQHQEEKDISRHIKAHFDQKYGPTWHCIVGTDFRAFVTHESKHFIFFYIGKIAICLYKAG 131          
BLAST of mRNA_L-elsbetiae_contig5670.14029.1 vs. uniprot
Match: A0A7S2CIH5_9STRA (Dynein light chain n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CIH5_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.010e-32
Identity = 54/79 (68.35%), Postives = 64/79 (81.01%), Query Frame = 1
Query:    1 VDDHGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 237
            +D+HGEM+ DA   A  AIE  ++EK IS +IKS F+ KYGPTWHCIVG+DF+AFVTHESKHF+FFY GK A CLYKAG
Sbjct:   38 MDEHGEMKADAHTVAGEAIEKFTEEKAISTSIKSFFDAKYGPTWHCIVGSDFRAFVTHESKHFIFFYIGKTAICLYKAG 116          
BLAST of mRNA_L-elsbetiae_contig5670.14029.1 vs. uniprot
Match: A0A7S0SUZ6_9STRA (Dynein light chain n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SUZ6_9STRA)

HSP 1 Score: 110 bits (275), Expect = 7.270e-30
Identity = 50/75 (66.67%), Postives = 62/75 (82.67%), Query Frame = 1
Query:   10 HGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKA 234
            HGEM+ DA + A+ A+E+  +EK+ISR IKS F+ KYGPTWHCIVG+DF+AFVT+ESKHF+FFY GK A CLYK 
Sbjct:   27 HGEMKNDALSVASTALEANQEEKDISRHIKSFFDQKYGPTWHCIVGSDFRAFVTYESKHFIFFYIGKTAICLYKT 101          
BLAST of mRNA_L-elsbetiae_contig5670.14029.1 vs. uniprot
Match: F0XW00_AURAN (Dynein light chain (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XW00_AURAN)

HSP 1 Score: 109 bits (273), Expect = 7.590e-30
Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = 1
Query:    4 DDHGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 237
            D+HGEM+ +  N AA AIE    E E+S+ IK+ F+ KYGPTWHCIVG+DF+A+VTHESK+F+FFY GK A CLYK G
Sbjct:    1 DEHGEMKQEVYNLAAYAIEQYVTEMEVSKHIKAHFDQKYGPTWHCIVGSDFRAYVTHESKNFIFFYQGKTAICLYKCG 78          
BLAST of mRNA_L-elsbetiae_contig5670.14029.1 vs. uniprot
Match: A0A482SJR4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJR4_9ARCH)

HSP 1 Score: 105 bits (263), Expect = 2.150e-28
Identity = 47/72 (65.28%), Postives = 60/72 (83.33%), Query Frame = 1
Query:   19 MRVDAQNWAAAAIESKSDEKEISRAIKSKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKA 234
            M+ DA    AAA+E+ ++EK+IS+ +K+ F+ KYGPTWHCIVG+DF+AFVTHESKHF+FFY GK A CLYKA
Sbjct:    1 MKHDAFTVVAAALETNTEEKDISKHVKTYFDQKYGPTWHCIVGSDFRAFVTHESKHFIFFYIGKTAICLYKA 72          
BLAST of mRNA_L-elsbetiae_contig5670.14029.1 vs. uniprot
Match: A0A8J2SHI5_9STRA ([Phosphatase 2A protein]-leucine-carboxy methyltransferase n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SHI5_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.370e-26
Identity = 50/79 (63.29%), Postives = 61/79 (77.22%), Query Frame = 1
Query:    1 VDDHGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 237
            VD+HGEM+ +A N AA A+E    E EIS+ IK++F+ KYGPTWHCIVG+DFK   THE+KHF+FFYHGK A  LYK G
Sbjct:  300 VDEHGEMKQEAYNLAAYAVEQFVTEMEISKHIKAQFDEKYGPTWHCIVGSDFKLQCTHEAKHFIFFYHGKTAVALYKCG 378          
BLAST of mRNA_L-elsbetiae_contig5670.14029.1 vs. uniprot
Match: A0A7S1YV50_9STRA (Dynein light chain n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YV50_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 7.320e-24
Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    1 VDDHGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 237
            +D+H EM+ DA + A  AIES   EK+ +  IK  F+ KYGPTWH IVG+DFKA+ THE+K F FFY GK A C+YKAG
Sbjct:   41 MDEHSEMKSDAISVATNAIESHIQEKDQANHIKRAFDAKYGPTWHVIVGSDFKAYGTHEAKTFFFFYVGKAAICMYKAG 119          
BLAST of mRNA_L-elsbetiae_contig5670.14029.1 vs. uniprot
Match: A0A0R3UCN8_MESCO (Dynein light chain n=1 Tax=Mesocestoides corti TaxID=53468 RepID=A0A0R3UCN8_MESCO)

HSP 1 Score: 94.0 bits (232), Expect = 2.630e-23
Identity = 41/74 (55.41%), Postives = 61/74 (82.43%), Query Frame = 1
Query:   16 EMRVDAQNWAAAAIESKSDEKEISRAIKSKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 237
            EM+ DA + A+ A+++++ EK+I+ AIK KF+ KYGPTWHCIVG +F ++VTHESKHF++FY G++A  L+K+G
Sbjct:   29 EMQHDAVDCASEAMQNQTIEKDIAAAIKKKFDSKYGPTWHCIVGRNFGSYVTHESKHFIYFYMGQVAILLFKSG 102          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5670.14029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4Z5_ECTSI4.300e-5298.73Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A835YST4_9STRA9.410e-3874.68Dynein light chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S2V5R3_9STRA7.090e-3672.15Dynein light chain (Fragment) n=1 Tax=Fibrocapsa j... [more]
A0A7S2CIH5_9STRA1.010e-3268.35Dynein light chain n=1 Tax=Florenciella parvula Ta... [more]
A0A7S0SUZ6_9STRA7.270e-3066.67Dynein light chain n=1 Tax=Chromulina nebulosa Tax... [more]
F0XW00_AURAN7.590e-3062.82Dynein light chain (Fragment) n=1 Tax=Aureococcus ... [more]
A0A482SJR4_9ARCH2.150e-2865.28Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A8J2SHI5_9STRA1.370e-2663.29[Phosphatase 2A protein]-leucine-carboxy methyltra... [more]
A0A7S1YV50_9STRA7.320e-2458.23Dynein light chain n=1 Tax=Ditylum brightwellii Ta... [more]
A0A0R3UCN8_MESCO2.630e-2355.41Dynein light chain n=1 Tax=Mesocestoides corti Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5670contigL-elsbetiae_contig5670:675..1936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score155.2
Seed ortholog evalue1.2e-35
Seed eggNOG ortholog2880.D7G4Z5
KEGG koko:K10418
KEGG Pathwayko04962,map04962
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of ATP-dependent microtubule motor activity, plus-end-directed
EggNOG OGsKOG3430@1,KOG3430@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Ec32 ortholog descriptionDynein light chain, type 1/2
Ec32 orthologEc-19_003050.1
Exons2
Model size240
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5670.14029.1prot_L-elsbetiae_contig5670.14029.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5670 693..1936 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816603.826362-UTR-L-elsbetiae_contig5670:674..6921622816603.826362-UTR-L-elsbetiae_contig5670:674..692Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5670 675..692 +
1691683678.5318005-UTR-L-elsbetiae_contig5670:674..6921691683678.5318005-UTR-L-elsbetiae_contig5670:674..692Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5670 675..692 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816603.841894-CDS-L-elsbetiae_contig5670:692..7731622816603.841894-CDS-L-elsbetiae_contig5670:692..773Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5670 693..773 +
1691683678.5435016-CDS-L-elsbetiae_contig5670:692..7731691683678.5435016-CDS-L-elsbetiae_contig5670:692..773Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5670 693..773 +
1622816603.8580234-CDS-L-elsbetiae_contig5670:1795..19361622816603.8580234-CDS-L-elsbetiae_contig5670:1795..1936Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5670 1796..1936 +
1691683678.5529232-CDS-L-elsbetiae_contig5670:1795..19361691683678.5529232-CDS-L-elsbetiae_contig5670:1795..1936Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5670 1796..1936 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5670.14029.1

>prot_L-elsbetiae_contig5670.14029.1 ID=prot_L-elsbetiae_contig5670.14029.1|Name=mRNA_L-elsbetiae_contig5670.14029.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=74bp
MRVDAQNWAAAAIESKSDEKEISRAIKSKFEVKYGPTWHCIVGTDFKAFV
THESKHFVFFYHGKMAFCLYKAG*
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mRNA from alignment at L-elsbetiae_contig5670:675..1936+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5670.14029.1 ID=mRNA_L-elsbetiae_contig5670.14029.1|Name=mRNA_L-elsbetiae_contig5670.14029.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1262bp|location=Sequence derived from alignment at L-elsbetiae_contig5670:675..1936+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGACGACCACGGCGAGATGAGAGTCGATGCTCAGAACTGGGCAGCAGC AGCGATAGAGAGCAAAAGCGACGAGAAGGAGATATCGAGAGCAATAAAGG TGAGGCACTATTTAGACATACTTTGCAACGGGCATGCTGGGATTAGCCCG TCATTGTTGGGTGCTCATCTCGAAGCCATGCGAGAGCGGGGGCGTTATTT GTCTGCCTGCGACCGGAACCTTCACAAAGTGTACGATGGAGGCGTAGACG GCGGAGAACATAGGCCCATGTTTGGTAGCGGGGGTCATAGAGCTTGGTAA CGGGGATCTTCGTCAGAGGCCGGAGTGTAAGATATGCCCATAGTTTGACT AAATCCCTTATTATTCGACAGAGAGTGGGAGCACACGTCAGCTCCTACAC CGGAGATCACTACATCCCGCACATACCCACATGCCGCACGAACCCCCCAA TCATTCACGTAACCCCAAAAAAGATTTCACTGATAATGCCTAGTCCCACC TAACAGCCCACCAGCCACCAGTCGGCATCGCTTCAGTGCACAACTCAAGA GAAGTACACAACCTCCCGGCTTACAAGGAGATATATTCGGACAGACATTG GAGCGGAGCACTATCGTCATATGTTTCCTCAACATGTGTGTGCGCTACTG CATACGGCTTAGGTTGGCGTGTTTTTTTTTGCCGTGAGGGTGTTTCTTCG GGTCGATTTTGACTTGGAGGAATGAGATGGTTCCTCACCCTCAATTGCCG CCCGTCCTCCATCCATGGCCCGCCGTCACGTTTTTTTGGTGTTCTGCTGT TAGTTGCGAATCCGACCTGCGCGCATATCTAGATATGTACCTTACCCGTA ACAAAATCAAAAAGTAGGCAGCGAGCGGGTGGGGGAAGATTACGGTGTAC CACGCCCCACTCCCCCGGAGACTGCACTTTTTGCGGGGCTTGACCAATCC GAACAACCAGAGTCCAGGCTAAATCATCCGGCGCATCGCTAGTAGCACCC ATCCGTTCTTCTAGTAGGTGCAGCCAGAGGCCAGCATTCGCGCATTGTGT GCTGTCTTCGTTCGTTCGTGCCTGACCGCCTCTGTCCCCTTTATGCCGCG TCTTCTCCTTCAACGCCGCAGTCGAAGTTCGAAGTGAAGTACGGGCCCAC ATGGCACTGCATCGTAGGGACGGACTTCAAGGCGTTCGTTACACACGAGA GCAAGCACTTCGTTTTCTTTTACCACGGGAAAATGGCGTTTTGTCTGTAT AAAGCCGGATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5670:675..1936+

>mRNA_L-elsbetiae_contig5670.14029.1 ID=mRNA_L-elsbetiae_contig5670.14029.1|Name=mRNA_L-elsbetiae_contig5670.14029.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=444bp|location=Sequence derived from alignment at L-elsbetiae_contig5670:675..1936+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGAGTCGATGCTCAGAACTGGGCAGCAGCAGCGATAGAGAGCAAAAG
CGACGAGAAGGAGATATCGAGAGCAATAAAGATGAGAGTCGATGCTCAGA
ACTGGGCAGCAGCAGCGATAGAGAGCAAAAGCGACGAGAAGGAGATATCG
AGAGCAATAAAGTCGAAGTTCGAAGTGAAGTACGGGCCCACATGGCACTG
CATCGTAGGGACGGACTTCAAGGCGTTCGTTACACACGAGAGCAAGCACT
TCGTTTTCTTTTACCACGGGAAAATGGCGTTTTGTCTGTATAAAGCCGGA
TAATCGAAGTTCGAAGTGAAGTACGGGCCCACATGGCACTGCATCGTAGG
GACGGACTTCAAGGCGTTCGTTACACACGAGAGCAAGCACTTCGTTTTCT
TTTACCACGGGAAAATGGCGTTTTGTCTGTATAAAGCCGGATAA
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