mRNA_L-elsbetiae_contig5630.13973.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5630.13973.1
Unique NamemRNA_L-elsbetiae_contig5630.13973.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5630.13973.1 vs. uniprot
Match: D8LBL3_ECTSI (Geranylgeranyl transferase type-2 subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBL3_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 7.320e-15
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:   10 FGGNEGHDPHILYTLSALQVMALLGELDRVDKDKV 114
            FGGNEGHDPHILYTLSALQVMALLGELDRVDKDKV
Sbjct:   91 FGGNEGHDPHILYTLSALQVMALLGELDRVDKDKV 125
[Close]
BLAST of mRNA_L-elsbetiae_contig5630.13973.1 vs. uniprot
Match: A0A7S1CLZ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CLZ2_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.090e-10
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:   10 FGGNEGHDPHILYTLSALQVMALLGELDRVDKDK 111
            FGGNEGHDPH+LYTLSA+Q++AL G LDRVD DK
Sbjct:   84 FGGNEGHDPHMLYTLSAVQLLALCGALDRVDGDK 117
[Close]
BLAST of mRNA_L-elsbetiae_contig5630.13973.1 vs. uniprot
Match: A0A7S1XAH0_9RHOD (Geranylgeranyl transferase type-2 subunit beta n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XAH0_9RHOD)

HSP 1 Score: 61.6 bits (148), Expect = 4.340e-10
Identity = 26/35 (74.29%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:   10 FGGNEGHDPHILYTLSALQVMALLGELDRVDKDKV 114
            FGGNE  DPH+LYTLSA+QV+A+LGEL+R+D+DKV
Sbjct:   49 FGGNEDQDPHLLYTLSAVQVLAMLGELERLDRDKV 83
[Close]
BLAST of mRNA_L-elsbetiae_contig5630.13973.1 vs. uniprot
Match: A0A7S2GW51_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GW51_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.520e-10
Identity = 23/34 (67.65%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:   10 FGGNEGHDPHILYTLSALQVMALLGELDRVDKDK 111
            FGGN+GHDPH+LYTLSALQ++A+  ELDR+D ++
Sbjct:   45 FGGNKGHDPHMLYTLSALQILAIANELDRIDPER 78
[Close]
BLAST of mRNA_L-elsbetiae_contig5630.13973.1 vs. uniprot
Match: F0YFP4_AURAN (Geranylgeranyl transferase type-2 subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFP4_AURAN)

HSP 1 Score: 60.5 bits (145), Expect = 1.360e-9
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 CDRFGGNEGHDPHILYTLSALQVMALLGELDRVDKDK 111
            C  FGG EGHDPH+LYTLSALQ++ALLG LD+ D  K
Sbjct:   86 CGGFGGGEGHDPHLLYTLSALQILALLGALDKCDGAK 122
[Close]
BLAST of mRNA_L-elsbetiae_contig5630.13973.1 vs. uniprot
Match: A0A836C9T0_9STRA (Geranylgeranyl transferase type-2 subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9T0_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.400e-9
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:   10 FGGNEGHDPHILYTLSALQVMALLGELDRVD 102
            FGG EGHDPHILYTLSALQV+ALLGEL R D
Sbjct:   75 FGGGEGHDPHILYTLSALQVLALLGELRRAD 105
[Close]
BLAST of mRNA_L-elsbetiae_contig5630.13973.1 vs. uniprot
Match: A0A8B9AZD5_PHODC (geranylgeranyl transferase type-2 subunit beta 1-like n=1 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B9AZD5_PHODC)

HSP 1 Score: 56.6 bits (135), Expect = 3.420e-9
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 CDRFGGNEGHDPHILYTLSALQVMALLGELDRVDKDKV 114
            C  FGGN GHDPH+LYTLSA+QV+AL   LD +D +KV
Sbjct:   69 CGGFGGNIGHDPHLLYTLSAVQVLALFDRLDVLDIEKV 106
[Close]
BLAST of mRNA_L-elsbetiae_contig5630.13973.1 vs. uniprot
Match: A0A0D2PWN9_GOSRA (Uncharacterized protein n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A0D2PWN9_GOSRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.530e-9
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:   10 FGGNEGHDPHILYTLSALQVMALLGELDRVDKDKVC 117
            F GN GHDPHILYTLSA+QV+AL  +LD +D DKVC
Sbjct:   71 FSGNIGHDPHILYTLSAVQVLALFNKLDVLDIDKVC 106
[Close]
BLAST of mRNA_L-elsbetiae_contig5630.13973.1 vs. uniprot
Match: A0A4D9D171_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D171_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 9.940e-9
Identity = 21/35 (60.00%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:   10 FGGNEGHDPHILYTLSALQVMALLGELDRVDKDKV 114
            FGGN+GHDPH+LYTLSA+Q++A+   L+++D+D+V
Sbjct:  116 FGGNQGHDPHLLYTLSAVQILAIADALEKIDQDRV 150
[Close]
BLAST of mRNA_L-elsbetiae_contig5630.13973.1 vs. uniprot
Match: A0A8J5FK70_ZINOF (Uncharacterized protein n=6 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FK70_ZINOF)

HSP 1 Score: 57.8 bits (138), Expect = 1.140e-8
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:   10 FGGNEGHDPHILYTLSALQVMALLGELDRVDKDKV 114
            FGGN GHDPH+LYTLSA+QV+ALL  LD +D DKV
Sbjct:   72 FGGNVGHDPHLLYTLSAVQVLALLNRLDVLDIDKV 106
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5630.13973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBL3_ECTSI7.320e-15100.00Geranylgeranyl transferase type-2 subunit beta n=1... [more]
A0A7S1CLZ2_9STRA1.090e-1079.41Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S1XAH0_9RHOD4.340e-1074.29Geranylgeranyl transferase type-2 subunit beta n=1... [more]
A0A7S2GW51_9STRA5.520e-1067.65Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
F0YFP4_AURAN1.360e-970.27Geranylgeranyl transferase type-2 subunit beta n=1... [more]
A0A836C9T0_9STRA3.400e-987.10Geranylgeranyl transferase type-2 subunit beta n=1... [more]
A0A8B9AZD5_PHODC3.420e-965.79geranylgeranyl transferase type-2 subunit beta 1-l... [more]
A0A0D2PWN9_GOSRA3.530e-972.22Uncharacterized protein n=1 Tax=Gossypium raimondi... [more]
A0A4D9D171_9STRA9.940e-960.00Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A8J5FK70_ZINOF1.140e-874.29Uncharacterized protein n=6 Tax=Zingiber officinal... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5630contigL-elsbetiae_contig5630:11947..12066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue4.9e-12
Seed eggNOG ortholog2880.D8LBL3
Preferred nameRABGGTB
KEGG rclassRC00049
KEGG koko:K02211,ko:K05956,ko:K12373
KEGG ReactionR00022,R06004,R11316
KEGG Pathwayko00511,ko00513,ko00520,ko00531,ko00603,ko00604,ko01100,ko04142,ko05202,map00511,map00513,map00520,map00531,map00603,map00604,map01100,map04142,map05202
KEGG ModuleM00079
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003008,GO:0003674,GO:0003824,GO:0004659,GO:0004661,GO:0004663,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005968,GO:0006464,GO:0006605,GO:0006612,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0007275,GO:0007600,GO:0007601,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008289,GO:0008318,GO:0009555,GO:0009987,GO:0010941,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016740,GO:0016765,GO:0017016,GO:0017137,GO:0018342,GO:0018344,GO:0019538,GO:0019840,GO:0019899,GO:0022607,GO:0022622,GO:0031267,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034613,GO:0036211,GO:0042886,GO:0042981,GO:0043067,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0046872,GO:0046907,GO:0046914,GO:0046982,GO:0046983,GO:0048193,GO:0048229,GO:0048364,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050877,GO:0050953,GO:0051020,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065003,GO:0065007,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0090150,GO:0097354,GO:0099402,GO:0140096,GO:1901564,GO:1902494,GO:1990234,GO:1990778
EggNOG free text desc.Prenyltransferase
EggNOG OGsCOG5029@1,KOG0366@2759
EC2.5.1.60,2.7.11.22,2.7.11.23,3.2.1.52
COG Functional cat.O
CAZyGH20
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko01006,ko03021,ko03110,ko04131
Exons1
Model size120
Cds size120
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816599.4549744-CDS-L-elsbetiae_contig5630:11946..120661622816599.4549744-CDS-L-elsbetiae_contig5630:11946..12066Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5630 11947..12066 +
1691683675.6017342-CDS-L-elsbetiae_contig5630:11946..120661691683675.6017342-CDS-L-elsbetiae_contig5630:11946..12066Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5630 11947..12066 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5630.13973.1prot_L-elsbetiae_contig5630.13973.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5630 11947..12066 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5630.13973.1

>prot_L-elsbetiae_contig5630.13973.1 ID=prot_L-elsbetiae_contig5630.13973.1|Name=mRNA_L-elsbetiae_contig5630.13973.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=40bp
CDRFGGNEGHDPHILYTLSALQVMALLGELDRVDKDKVCV
back to top

mRNA from alignment at L-elsbetiae_contig5630:11947..12066+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5630.13973.1 ID=mRNA_L-elsbetiae_contig5630.13973.1|Name=mRNA_L-elsbetiae_contig5630.13973.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=120bp|location=Sequence derived from alignment at L-elsbetiae_contig5630:11947..12066+ (Laminarionema elsbetiae ELsaHSoW15)
TGTGATAGGTTCGGAGGGAACGAGGGCCACGACCCGCACATCCTCTACAC
CCTGAGCGCGCTGCAGGTCATGGCGCTGCTTGGGGAGCTGGACCGGGTGG
ACAAGGATAAGGTGTGTGTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5630:11947..12066+

>mRNA_L-elsbetiae_contig5630.13973.1 ID=mRNA_L-elsbetiae_contig5630.13973.1|Name=mRNA_L-elsbetiae_contig5630.13973.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=240bp|location=Sequence derived from alignment at L-elsbetiae_contig5630:11947..12066+ (Laminarionema elsbetiae ELsaHSoW15)
TGTGATAGGTTCGGAGGGAACGAGGGCCACGACCCGCACATCCTCTACAC
CCTGAGCGCGCTGCAGGTCATGGCGCTGCTTGGGGAGCTGGACCGGGTGG
ACAAGGATAAGGTGTGTGTGTGTGATAGGTTCGGAGGGAACGAGGGCCAC
GACCCGCACATCCTCTACACCCTGAGCGCGCTGCAGGTCATGGCGCTGCT
TGGGGAGCTGGACCGGGTGGACAAGGATAAGGTGTGTGTG
back to top