mRNA_L-elsbetiae_contig5595.13913.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5595.13913.1 vs. uniprot
Match: A0A6H5KXH5_9PHAE (CMD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXH5_9PHAE) HSP 1 Score: 401 bits (1031), Expect = 2.640e-127 Identity = 204/323 (63.16%), Postives = 247/323 (76.47%), Query Frame = 2 Query: 2 ISRSHKEVLALGLSLANQCPHCAYIHTAMGPAAGDDVKMNAIQRFYTTKDPDLAFPLVEGESRV-NHDFGAWSISHRDGEPKPIPCTPDQVPEFLGTVMLFGMLNRIVDAFVSKQDSGPMFPLPIRMMMRSPTATPMVQRMMGRMMSWMMKGEDKKIAAGKVLKDINTVTPIIKGFEGAADEPPLPLPEAMSWAATGSDETIGVTFAFLAAEAEIMAQCYVSSALKTHMKSWVSKWDG--AKTRPTKEWLES--QVAESGFGADDKADVAMLRLMLVTVTASHAIDDTLLSECQAMLGFRGTHAAVLWSSFLAGQRLCQRAFA 955 +SRS KEV+ALG+SL+N CPHCAYIHTAMGPAAGDDV ++++ FY T+D D AFP+ EG+ + N+ +WSI HRDG+ + PCTP+Q+PE +GT MLF +LNR+VD FVSK ++GPMFPLP+RMMM+ ATP++QR M MMSWMM GED K+ AGKVLK+IN V PIIKGF G ADE P+ LPE +SWA TG DETI FAFLAAEAE++A +V A+K+ +SWVS WDG A+ +EWL +V SG G DK DV MLRLMLVT+ ASH DDTLLSECQA+ GFRGTHAAVLWS+FLAGQR CQ A A Sbjct: 100 LSRSQKEVIALGVSLSNGCPHCAYIHTAMGPAAGDDVDFDSLRLFYQTQDADAAFPVGEGQDPMSNNTLASWSIRHRDGKEQAAPCTPEQLPEVVGTAMLFDILNRVVDTFVSKTEAGPMFPLPMRMMMKVQPATPLLQRAMSWMMSWMMHGEDVKVEAGKVLKEINEVHPIIKGFRGCADETPMALPEQLSWA-TGGDETIAAAFAFLAAEAELLAHAFVPPAVKSFTESWVSSWDGGAAQIGELEEWLGPTVRVTASGLGEGDKGDVVMLRLMLVTIVASHRTDDTLLSECQAIHGFRGTHAAVLWSAFLAGQRSCQLAIA 421
BLAST of mRNA_L-elsbetiae_contig5595.13913.1 vs. uniprot
Match: A0A7Y5DLZ2_9SPHN (CMD domain-containing protein n=1 Tax=Novosphingobium sp. TaxID=1874826 RepID=A0A7Y5DLZ2_9SPHN) HSP 1 Score: 79.3 bits (194), Expect = 5.240e-12 Identity = 90/328 (27.44%), Postives = 139/328 (42.38%), Query Frame = 2 Query: 8 RSHKEVLALGLSLANQCPHCAYIHTAMGPAAGDDVKMNAIQRFYTTKDPDLAFPLVEGESRVNHDFGAWSISHRD-GEP--KPIPCTPDQVPEFLGTVMLFGMLNRIVDAFVSKQDSGPMFPLPIRMMMRSPTATPMVQRMMGRMMSWMMKGEDKKIAAGKVLKDINTVTPIIKGFEGAADEPPLPLPEAMSWAATGSDETIGVTFAFLAAEAEIMAQCYVSSALKTHMKSWVSKWDGAKTRPTKEWLESQVAESGFGADDKADVAMLRLMLVTVTASHAIDDTLLSECQAML-GFRGTHAAVLWSSFLAGQRLCQRAFAAGLVAPSG 979 R+ +E +A G+SLAN+CP+C +HTAM A+GD + I+ ++ AW+ + R G P + P VP+ LGT +LF +NR+V F+S+ + PLP+R +A P +++ GR + G A + ++ + P PLP WAA +D I A L A E +V ++ + V W G + WL V+E ADD+ A RL L T A++ +D L++ + G A WSS A + L AG + P+G Sbjct: 72 RALREAVASGVSLANRCPYCVDVHTAMLDASGDHALADRIR----------------SAGADDNALIAWASATRQCGAPALEAPPFAKQLVPQLLGTAVLFHYINRLVSVFLSESAA----PLPLR------SALP--RKLFGRAFGGTV-GRHLLAARAEPGASLHLL-------------PDAPLPREFVWAA--ADRAIAGGLARLDAAVEAAGALHVPEPVRALVAQRVGIWRGEDVPLSDRWLAEAVSE--LAADDQR--ASARLALQTALAAYRVDGALIAAFRRHFPGDAPLLATAAWSSLTATRLL------AGWMLPNG 345
BLAST of mRNA_L-elsbetiae_contig5595.13913.1 vs. uniprot
Match: UPI00174AAE10 (carboxymuconolactone decarboxylase family protein n=2 Tax=Kitasatospora TaxID=2063 RepID=UPI00174AAE10) HSP 1 Score: 76.3 bits (186), Expect = 5.620e-11 Identity = 77/313 (24.60%), Postives = 131/313 (41.85%), Query Frame = 2 Query: 8 RSHKEVLALGLSLANQCPHCAYIHTAMGPAAGDDVKMNAIQRFYTTKDPDLAFPLVEGESRVNHDFGAWSISHRDGEPKPIPCTPDQVPEFLGTVMLFGMLNRIVDAFVSKQDSGPMFPLPIRMMMRSPTATPMVQRMMGRMMSWMMKGEDKKIAAGKVLKDINTVTPIIKGFEGAADEPPLPLPEAMSWAATGSDETIGVTFAFLAAEAEIMAQCYVSSALKTHMKSWVSKWDGAKTRPTKEWLESQVAESGFGADDKADVAMLRLMLVTVTASHAIDDTLLSECQAMLGFRGTHAAV---LWSSFLAGQRL 937 R KE +A +S+AN+CP C +HTA+ ++++ P A G ++ P P Q+PE LGTV++ LNR+V+ F+ PLP P A R + R+++W+++ + A V D+ P PLP ++WA + I FA AA E + V A++ + +++WDG + W + VA A + RL+L+T AS+ +D+T++++ + G G A V W+S A +++ Sbjct: 80 RPAKEAVACAVSVANECPFCERMHTAV---------LHSLT-------PGRATDCGAGRFDEVTEWARLGAVRDTAAANPRPFPSGQLPELLGTVVIMQYLNRMVNVFLGG------VPLP-------PGAPESSLRPVLRVLTWLIRSSARSEPAPGVSLDLLA---------------PAPLPADLAWAE--GNPVIASAFARAAAAVEEAGRADVPKAVQELLHDTLARWDGRPPGLGRGWADQAVA-----ALVPQERPAARLVLLTALASYTVDETVIADFRRAAGEPGDRALVGLTAWASLTAARQV 341
BLAST of mRNA_L-elsbetiae_contig5595.13913.1 vs. uniprot
Match: UPI00110F8565 (carboxymuconolactone decarboxylase family protein n=2 Tax=Streptomyces TaxID=1883 RepID=UPI00110F8565) HSP 1 Score: 68.6 bits (166), Expect = 1.550e-8 Identity = 40/112 (35.71%), Postives = 55/112 (49.11%), Query Frame = 2 Query: 5 SRSHKEVLALGLSLANQCPHCAYIHTAMGPAAGDDVKMNAIQRFYTTKDPDLAFPLVEGESRVNHDFGAWSISHRDGEPKPIPCTPDQVPEFLGTVMLFGMLNRIVDAFVSK 340 SR+ K+V+A G+SLAN+CP C HT + A GD I R DP A L AW+ R GE P Q PEF+GT + F +NR+V + +++ Sbjct: 66 SRTDKQVVAAGVSLANRCPFCVDAHTVLLHATGDHRLAEVIARGEVPADPGHAALL------------AWAKGTRTGEAGEPPFPAAQAPEFIGTALAFHFINRVVSSLLTE 165
BLAST of mRNA_L-elsbetiae_contig5595.13913.1 vs. uniprot
Match: A0A2W2EY10_9ACTN (DNA-binding protein n=2 Tax=Nonomuraea TaxID=83681 RepID=A0A2W2EY10_9ACTN) HSP 1 Score: 68.2 bits (165), Expect = 2.130e-8 Identity = 71/267 (26.59%), Postives = 109/267 (40.82%), Query Frame = 2 Query: 8 RSHKEVLALGLSLANQCPHCAYIHTAMGPAAGDDVKMNAIQRFYTTKDPDLAFPLVEGESRVNHDFGAWSISHRDGEPKPIPCTPDQVPEFLGTVMLFGMLNRIVDAFVSKQDSGPMFPLPIRMMMRSPTATPMVQRMMGRMMSWMMKGEDKKIAAGKVLKD--INTVTPIIKGFEGAADEPPLPLPEAMSWAATGSDETIGVTFAFLAAEAEIMAQCYVSSALKTHMKSWVSKWDGAKTRPTKEWLESQVAESGFGADDKADVAML 802 R+ KEV+ALG+S+AN+CP C HT + A GD + T DP A L AW+ RDG P PD +LGT + F +NR+V A ++ + P G S +++ + AG V ++ + P+++G LP +WAA +G +A L A AE + +S A + + V+ WDG + WL+ +A G A +A+L Sbjct: 67 RNAKEVVALGVSMANRCPFCVDAHTTLLHATGDHRLAEVVAGGGTPGDPFHAALL------------AWA---RDGGP-----APDPAAGYLGTALAFHFINRMVSALLTDD----LLPA-------------------GLQRSRLVRSAGGRALAGAVRRELPVGASLPLVEG---------LPARPEPAWAA---GTPLGAAYAVLRAVAEAGGEL-LSGAARAVVADTVAAWDGTHPPMSGAWLDGPLASLSAGDRPGARLALL 277
BLAST of mRNA_L-elsbetiae_contig5595.13913.1 vs. uniprot
Match: A0A7W9L9P2_9ACTN (AhpD family alkylhydroperoxidase n=2 Tax=Nonomuraea TaxID=83681 RepID=A0A7W9L9P2_9ACTN) HSP 1 Score: 67.8 bits (164), Expect = 2.820e-8 Identity = 76/282 (26.95%), Postives = 125/282 (44.33%), Query Frame = 2 Query: 5 SRSHKEVLALGLSLANQCPHCAYIHTAMGPAAGDDVKMNAIQRFYTTKDPDLAFPLVEGESRVNHDFGAWSISHRDGEPKPIPCTPDQV-PEFLGTVMLFGMLNRIVDAFVSKQDSGPMFPLPIRMMMRSPTATPMVQRMMGRMMSWMMKGEDKKIAAGKVLKDINTVTPIIKGFEGAADEPPLPLPEAMSWAATGSDETIGVTFAFLAAEAEIMAQCYVSSALKTHMKSWVSKWDGAKTRPTKEWLESQVAESGFGADDKADVAMLRLMLVTVTASHAIDD 847 SR+ KEV+ALG+SLAN+CP C HT + A GD + T DP+ A L AW+ S R G Q+ PE +GT + F +NR+ A +++ + P ++ + +V+ + GR+M+ ++ +++ +G L P++ AD P P P +W G+ ++G +A L A A I + A + + V+ WDG WL++ +AE G + A RL L+ A + + D Sbjct: 66 SRTGKEVVALGVSLANRCPFCVAAHTTLLHATGDHRLAETVAAGGTPDDPEHAAML------------AWATSRRGGA---------QIGPEHIGTALAFHFVNRMASALLTEN----LLPANLQ-------KSRLVRSVGGRVMARTVR---RRLLSGASL-------PLV------ADLPAGPEP---AW---GAGTSVGAAYAALRA-AGIAGGELLGDAARAAVADTVAAWDGEHPPMGGAWLDAPLAEVPAG-----ERAGARLALLAALAPYRVTD 287
BLAST of mRNA_L-elsbetiae_contig5595.13913.1 vs. uniprot
Match: A0A7W7WLP7_9ACTN (AhpD family alkylhydroperoxidase n=2 Tax=Kitasatospora gansuensis TaxID=258050 RepID=A0A7W7WLP7_9ACTN) HSP 1 Score: 67.8 bits (164), Expect = 3.430e-8 Identity = 70/289 (24.22%), Postives = 124/289 (42.91%), Query Frame = 2 Query: 5 SRSHKEVLALGLSLANQCPHCAYIHTAMGPAAGDDVKMNAIQRFYTTKDPDLAFPLVEGESRVNHDFGAWSISHRDGEPKPIPCTPDQVPEFLGTVMLFGMLNRIVDAFVSKQDSGPMFPLPIRMMMRSPTATPMVQRMMGRMMSWMMKGEDKKIAAGKVLKDINTVTPIIKGFEGAADEPPLPLPEAMSWAATGSDETIGVTFAFLAAEAEIMAQCYVSSALKTHMKSWVSKWDGAKTRPTKEWLESQVAESGFGADDKADVAMLRLMLVTVTASHAIDDTLLSECQA 871 +R+ KE +A +S+AN+CP C +H+AM + AI+ + +A P V + D + + P +QVPE LG+V++ LNR+V+ F+ PLP P A R + ++++W+++ + P G G P LP ++WAA S+ I FA AA E+ + + ++ + V WDG + W ++ V A+++ RL L+T A++ +D+T++ +A Sbjct: 79 ARTTKEAVAAAVSVANECPFCIRMHSAMLHSLAPGKDSAAIREGRLDQ---VADPAVRAVADWVRDGAVRDTAAKTR----FPFAAEQVPELLGSVVIMHYLNRMVNVFLGAM------PLP-------PGAPESSLRPVMKVLTWLLRSAAR-------------AEPKAGGTLGLL--PAAALPADLAWAA--SNPQIAAAFARAAAAVELAGRAALPDGVRELVLDTVDAWDGRPPGLGRGWADAAVETRP--AEERPAA---RLALLTALAAYTVDETVVDAARA 325
BLAST of mRNA_L-elsbetiae_contig5595.13913.1 vs. uniprot
Match: A0A5D4JCG8_9ACTN (DNA-binding protein n=3 Tax=Streptomyces TaxID=1883 RepID=A0A5D4JCG8_9ACTN) HSP 1 Score: 67.4 bits (163), Expect = 3.580e-8 Identity = 75/288 (26.04%), Postives = 106/288 (36.81%), Query Frame = 2 Query: 5 SRSHKEVLALGLSLANQCPHCAYIHTAMGPAAGDDVKMNAIQRFYTTKDPDLAFPLVEGESRVNHDFG---AWSISHRDGEPKPIPCTPDQVPEFLGTVMLFGMLNRIVDAFVSKQD-SGPMFPLPIRMMMRSPTATPMVQRMMGRMMSWMMKGEDKKIAAGKVLKDINTVTPIIKGFEGAADEPPLPLPEAMS---WAATGSDETIGVTFAFLAAEAEIMAQCYVSSALKTHMKSWVSKWDGAKTRPTKEWLESQVAESGFGADDKADVAMLRLMLVTVTASHAIDD 847 SR+ KE++ G+SLAN+CP C HT + A GD P+LA L GE + AW R P P D+ PEF+G+ + F +NRIV A + ++ SG G D L D +++ G EP L LP + W A +D +G F L + A A + ++ V+ WDG P SG G D+A+ RL L+ A + I D Sbjct: 66 SRTEKELVTYGVSLANRCPFCVGAHTLLLYAGGD---------------PELAGALARGERPADPGHAQLLAWGQDMRKSAPFPA----DEAPEFVGSALAFHFINRIVSALIDEESVSG---------------------------------GADPD-----ELLDSEAGRALVRAVRGRP-EPGLSLPLLGTEGPWPAWAADTPVGAAFGALRSAAHAGAGL-LEERDAAFVRESVAAWDGFSPLPL----------SGEGLPDRAERPGARLALLAARAPYRITD 284
BLAST of mRNA_L-elsbetiae_contig5595.13913.1 vs. uniprot
Match: A0A5S4F7S0_9ACTN (DNA-binding protein n=1 Tax=Nonomuraea zeae TaxID=1642303 RepID=A0A5S4F7S0_9ACTN) HSP 1 Score: 66.6 bits (161), Expect = 7.430e-8 Identity = 78/281 (27.76%), Postives = 113/281 (40.21%), Query Frame = 2 Query: 8 RSHKEVLALGLSLANQCPHCAYIHTAMGPAAGDDVKMNAIQRFYTTKDPDLAFPLVEGESRVNHDFGAWSISHRDGEPKPIPCTPDQVPEFLGTVMLFGMLNRIVDAFVSKQDSGPMFPLPIRMMMRSPTATPMVQRMMGRMMSWMMKGEDKKIAAGKVLKDINTVTPIIKGFEGAADEPPLPLPEAMSWAATGSDETIGVTFAFLAAEAEIMAQCYVSSALKTHMKSWVSKWDGAKTRPTKEWLESQVAESGFGADDKADVAMLRLMLVTVTASHAIDDT 850 R+ KEV+ALG+S+AN+CP C HT + A GD AI R T DP A L AW+ + G +P P + E++GT + F +NR+ ++ LP + + +V+ M GR+++ + + P+ AD P P E WAA +G FA L A A + A +T + V WDG WL+ VA A AD RL L+T A + + DT Sbjct: 67 RTGKEVVALGVSMANRCPFCVDAHTMLLHATGDHRLAEAIARGDTPADPAHAALL------------AWAGA-TGGPVRPGPFPAELAHEYVGTALSFHFINRVASTLLTDGV------LPANLQ-----RSRLVRSMGGRVLT----------------RTVRRRLPVGTSLAMVADLPARPERE---WAA---GTPVGAAFATLEAVAGSGGELLGDGA-RTAVTDAVEVWDGTPPPMNTAWLDGPVA-----ALPAADRPGARLALLTALAPYRVTDT 295
BLAST of mRNA_L-elsbetiae_contig5595.13913.1 vs. uniprot
Match: A0A7K1L942_9ACTN (Carboxymuconolactone decarboxylase n=5 Tax=Actinomadura TaxID=1988 RepID=A0A7K1L942_9ACTN) HSP 1 Score: 65.9 bits (159), Expect = 1.200e-7 Identity = 89/326 (27.30%), Postives = 127/326 (38.96%), Query Frame = 2 Query: 8 RSHKEVLALGLSLANQCPHCAYIHTAMGPAAGDDVKMNAIQRFYTTKDPDLAFPLVEGESRVNHDFGAWSISHRDGEPKPIPCTPDQVPEFLGTVMLFGMLNRIVDAFVSKQDSGPMFPLPIRMMMRSPTATPMVQRMMGRMMSWMMKGEDKKIAAGKVLKDINTVTPIIKGFEGAADEPPLPLPEAMSWAATGSDETIGVTFAFL-AAEAEIMAQCYVSSALKTHMKSWVSKWDGAKTRPTKEWLESQVAESGFGADDKADVAMLRLMLVTVTASHAIDDTLLSECQAMLGFRGTHAAVL-WSSFLAGQRLCQRAFAAGLVAPSG 979 R+ KE +A +S N CP+C +H A PAA PL W GE P + PE++G ++ F LNR+V+ F+ P P R PM+ R++GRM ++I + V AA P PLP ++WAA T V AF AA A A V ++ +++ V+ WDG+ +K W AE GA D RL L+T ASH + ++ +A+ GT + W+SF A + R AAG A G Sbjct: 78 RAAKEAVAAEVSRRNTCPYCVAVHAAAAPAAT---------------------PLT-----------GWVQRGGAGES---PFPDEHAPEYIGVLVTFEYLNRMVNLFLDDSPLPPSVPGAAR--------DPMM-RLLGRMTR-------RRIRSPGV---------------SAALLPAAPLPGDLAWAA----RTPHVAEAFARAAAAFXXAGAAVPPPVRDLVRAQVAAWDGSPKGLSKGW-----AEEAAGALHPVDRPAGRLALLTAFASHQVGARDVAAFRAVRPDDGTLVGLAAWASFTAARAAGARVHAAGPSAERG 328 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5595.13913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5595.13913.1 >prot_L-elsbetiae_contig5595.13913.1 ID=prot_L-elsbetiae_contig5595.13913.1|Name=mRNA_L-elsbetiae_contig5595.13913.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=300bp MGPAAGDDVKMNAIQRFYTTKDPDLAFPLVEGESRVNHDFGAWSISHRDGback to top mRNA from alignment at L-elsbetiae_contig5595:2411..9102- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5595.13913.1 ID=mRNA_L-elsbetiae_contig5595.13913.1|Name=mRNA_L-elsbetiae_contig5595.13913.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6692bp|location=Sequence derived from alignment at L-elsbetiae_contig5595:2411..9102- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5595:2411..9102- >mRNA_L-elsbetiae_contig5595.13913.1 ID=mRNA_L-elsbetiae_contig5595.13913.1|Name=mRNA_L-elsbetiae_contig5595.13913.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1800bp|location=Sequence derived from alignment at L-elsbetiae_contig5595:2411..9102- (Laminarionema elsbetiae ELsaHSoW15)back to top |