mRNA_L-elsbetiae_contig5589.13906.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5589.13906.1
Unique NamemRNA_L-elsbetiae_contig5589.13906.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5589.13906.1 vs. uniprot
Match: A0A6H5JK37_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK37_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.490e-8
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 QVMTYVVSKGLKSAEQAWLLLSAARDPACHVSAATCGR 114
            QVMT+   +GLKS E+AWLLLSAARDP CH SAA CGR
Sbjct:  233 QVMTFAAMRGLKS-ERAWLLLSAARDPTCHASAAACGR 269
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BLAST of mRNA_L-elsbetiae_contig5589.13906.1 vs. uniprot
Match: D8LN78_ECTSI (Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN78_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 1.490e-8
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 QVMTYVVSKGLKSAEQAWLLLSAARDPACHVSAATCGR 114
            QVMT+   +GLKS E+AWLLLSAARDP CH SAA CGR
Sbjct:  255 QVMTFAAMRGLKS-ERAWLLLSAARDPTCHASAAACGR 291
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5589.13906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JK37_9PHAE1.490e-873.68Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LN78_ECTSI1.490e-873.68Tyrosine kinase specific for activated (GTP-bound)... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5589contigL-elsbetiae_contig5589:406..537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size126
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816591.251914-UTR-L-elsbetiae_contig5589:405..4111622816591.251914-UTR-L-elsbetiae_contig5589:405..411Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5589 406..411 +
1691683669.3715272-UTR-L-elsbetiae_contig5589:405..4111691683669.3715272-UTR-L-elsbetiae_contig5589:405..411Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5589 406..411 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816591.2645335-CDS-L-elsbetiae_contig5589:411..5371622816591.2645335-CDS-L-elsbetiae_contig5589:411..537Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5589 412..537 +
1691683669.3828785-CDS-L-elsbetiae_contig5589:411..5371691683669.3828785-CDS-L-elsbetiae_contig5589:411..537Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5589 412..537 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5589.13906.1prot_L-elsbetiae_contig5589.13906.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5589 412..537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5589.13906.1

>prot_L-elsbetiae_contig5589.13906.1 ID=prot_L-elsbetiae_contig5589.13906.1|Name=mRNA_L-elsbetiae_contig5589.13906.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=42bp
MTYVVSKGLKSAEQAWLLLSAARDPACHVSAATCGRRVKVT*
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mRNA from alignment at L-elsbetiae_contig5589:406..537+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5589.13906.1 ID=mRNA_L-elsbetiae_contig5589.13906.1|Name=mRNA_L-elsbetiae_contig5589.13906.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=132bp|location=Sequence derived from alignment at L-elsbetiae_contig5589:406..537+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGATGACGTACGTGGTTTCGAAGGGGCTCAAGTCGGCGGAGCAGGC
GTGGCTTCTCCTCTCCGCAGCGCGTGATCCAGCTTGCCATGTCAGCGCGG
CCACCTGCGGCAGGCGAGTGAAAGTGACCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5589:406..537+

>mRNA_L-elsbetiae_contig5589.13906.1 ID=mRNA_L-elsbetiae_contig5589.13906.1|Name=mRNA_L-elsbetiae_contig5589.13906.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=252bp|location=Sequence derived from alignment at L-elsbetiae_contig5589:406..537+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACGTACGTGGTTTCGAAGGGGCTCAAGTCGGCGGAGCAGGCGTGGCT
TCTCCTCTCCGCAGCGCGTGATCCAGCTTGCCATGTCAGCGCGGCCACCT
GCGGCAGGCGAGTGAAAGTGACCTGAATGACGTACGTGGTTTCGAAGGGG
CTCAAGTCGGCGGAGCAGGCGTGGCTTCTCCTCTCCGCAGCGCGTGATCC
AGCTTGCCATGTCAGCGCGGCCACCTGCGGCAGGCGAGTGAAAGTGACCT
GA
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