mRNA_L-elsbetiae_contig5576.13891.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5576.13891.1
Unique NamemRNA_L-elsbetiae_contig5576.13891.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5576.13891.1 vs. uniprot
Match: A0A6H5KB40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB40_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 4.140e-19
Identity = 79/155 (50.97%), Postives = 91/155 (58.71%), Query Frame = 1 
Query:    1 VVLKISVGLP-AGAESGGAEGTYGVSGGTTKAIP-ATKSWSTQVVAQTFGAAADSSTALCFRAHVHMPALVLSVVPNVAATAVGGG-----GAMEVAVSLRSRGTHQGNSSA---GFAALGGDSGNHGSSGRAGSGED---EVWAVGTVRVPLPP 426
            VVLKISV LP A   SGGA  +    G   + I  AT+ WS +VVA+ FGA ADSSTALCFRA VH+PA      P++ A   G       G MEVAV LRSRG  Q +  A   GF ALG  S     + R+G GE+   EVWAVG V VPLPP
Sbjct: 1255 VVLKISVELPPAAVASGGAADSLRAQGDPKREISMATRKWSKEVVAELFGAPADSSTALCFRAQVHLPACSP---PSLPAARNGXXXXXXXGVMEVAVCLRSRGKQQPDERANDTGFVALGSSSRGGADAHRSGGGENGEKEVWAVGKVAVPLPP 1406
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BLAST of mRNA_L-elsbetiae_contig5576.13891.1 vs. uniprot
Match: D8LGT4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGT4_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 4.630e-18
Identity = 78/168 (46.43%), Postives = 89/168 (52.98%), Query Frame = 1 
Query:    1 VVLKISVGLP-AGAESGGAEGTYGVSGGTTKAIPA-TKSWSTQVVAQTFGAAADSSTALCFRAHVHMPALVLSVVPNVA-----------------ATAVGGGGAMEVAVSLRSRGTHQGNSSA---GFAALG----GDSGNHGSSGRAGSGEDEVWAVGTVRVPLPP 426
            VVLKISV LP A   SGG   +    G   + I A T+ WS +VVA+ FGA ADSST LCFRA VH+PA     +P                      + G GG MEV V LRSRG  Q +  A   GF ALG    G +  HGS G  G+GE EVW VG V VPLPP
Sbjct: 1180 VVLKISVELPPAAVASGGGADSLRSQGDPKRGISAATRKWSKEVVAEMFGAPADSSTVLCFRAQVHLPAFSPPSLPTARNGXXXXXXXXXXXXXXXXXSAGVGGVMEVTVCLRSRGKQQHDERANDTGFVALGSSSRGGADAHGSGG-GGNGEKEVWTVGKVAVPLPP 1346
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5576.13891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KB40_9PHAE4.140e-1950.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGT4_ECTSI4.630e-1846.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5576contigL-elsbetiae_contig5576:7729..9212 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size820
Cds size453
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5576.13891.1prot_L-elsbetiae_contig5576.13891.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5576 8094..9212 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816589.7929652-UTR-L-elsbetiae_contig5576:7728..80931622816589.7929652-UTR-L-elsbetiae_contig5576:7728..8093Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5576 7729..8093 -
1691683668.3088713-UTR-L-elsbetiae_contig5576:7728..80931691683668.3088713-UTR-L-elsbetiae_contig5576:7728..8093Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5576 7729..8093 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816589.8090527-CDS-L-elsbetiae_contig5576:8093..84231622816589.8090527-CDS-L-elsbetiae_contig5576:8093..8423Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5576 8094..8423 -
1691683668.3197436-CDS-L-elsbetiae_contig5576:8093..84231691683668.3197436-CDS-L-elsbetiae_contig5576:8093..8423Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5576 8094..8423 -
1622816589.8238423-CDS-L-elsbetiae_contig5576:9089..92121622816589.8238423-CDS-L-elsbetiae_contig5576:9089..9212Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5576 9090..9212 -
1691683668.330034-CDS-L-elsbetiae_contig5576:9089..92121691683668.330034-CDS-L-elsbetiae_contig5576:9089..9212Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5576 9090..9212 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5576.13891.1

>prot_L-elsbetiae_contig5576.13891.1 ID=prot_L-elsbetiae_contig5576.13891.1|Name=mRNA_L-elsbetiae_contig5576.13891.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=151bp
VVLKISVGLPAGAESGGAEGTYGVSGGTTKAIPATKSWSTQVVAQTFGAA
ADSSTALCFRAHVHMPALVLSVVPNVAATAVGGGGAMEVAVSLRSRGTHQ
GNSSAGFAALGGDSGNHGSSGRAGSGEDEVWAVGTVRVPLPPFLSPPGTW
*
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mRNA from alignment at L-elsbetiae_contig5576:7729..9212-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5576.13891.1 ID=mRNA_L-elsbetiae_contig5576.13891.1|Name=mRNA_L-elsbetiae_contig5576.13891.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1484bp|location=Sequence derived from alignment at L-elsbetiae_contig5576:7729..9212- (Laminarionema elsbetiae ELsaHSoW15)
GTGGTTTTGAAGATTTCCGTCGGACTACCGGCCGGAGCTGAGAGCGGGGG
TGCCGAAGGGACGTATGGGGTATCAGGGGGTACAACAAAGGCGATCCCAG
CAACGAAGTCCTGGTCAACGCAGGTGAGAACGCACAATCGCTTCACTCAA
CAACCGTGGGTTTTGTAATCTACTTGTCGATGTTGTAGTCGAGATTCGGT
GTCTACTACCCCACGTGCCCCAGGTCGATGCGGTGTTATTCCCACTCGTG
CCAGAGATGGCGTATTTGCACGTGGTGGCACTTGGTTGCGTGTCACCAAA
GCGCCCAACTGAAGCACTTGTAGACTGCTGTGTGTGGTGGATGATTTTGG
TTTCCCAGCATGCTCTCTGAAGGCTCCTGGGTGCTGAACCGCATCCCTTG
CTGAACCGCATGCCTTGCCGACTCGCTTCCTTCTTGGCTGCCTGCTTGCC
TCGAAAAAAACACAAGCGCAAGAGCATCAGAGCTCAGTTTTTTGTTTTGT
TTTTCTTCTTCTTACGGATATCCACTCGTGAACCAGCGCTCGGACAAGGG
TCCGAGCAAATTTAGAAGCAGCGCACCTGCGTAGTAACTTTTAACATACT
TTCGTGATGGCGGGTCGCTCGCCCTCCTCGACCATTCCTGCGCCCTCGCG
GACGTGCAAAGCGCCGCACCATTGATTGACTGCCCCAGCTCTCCTTCTCT
TCGTTTCGTGGGTAGGCACGAATAACGCCAACACTCAAAACACTCAGCAG
TATCAGCGTTGAACGTTTAATCTACATATCGCTTTACAGGTTGTTGCGCA
AACGTTCGGCGCCGCGGCGGACTCGAGCACGGCCCTCTGCTTCCGGGCAC
ACGTGCACATGCCGGCCTTGGTGTTGTCGGTGGTACCGAACGTCGCAGCC
ACTGCCGTTGGCGGAGGAGGCGCGATGGAGGTGGCCGTGTCCCTGAGGAG
CCGCGGCACGCACCAGGGCAACAGCAGCGCCGGTTTCGCGGCGCTCGGTG
GCGATAGCGGTAACCACGGTAGTAGTGGTCGCGCTGGGAGCGGGGAAGAT
GAGGTGTGGGCGGTCGGAACTGTCCGTGTTCCTCTGCCGCCGTTCCTGTC
GCCGCCGGGAACATGGTGATGGGACGGCCGAAAAGTGTTTCTCATCCAAC
ACACAGTATAGTTTGCACTTCACGTTTTGCTGTCCAGGAAGGGTGGATGA
GTGGTGTTTCGGTCAGACTGTGGGAAGAAGCGACCTTTTCCCAGGCAGCT
GCACTTTAGTCCTGGTCGTGCTATCGCCCCCACACGGCGTAGGAGCCAAG
AGCGCTCTGAACTGAGCCGGAGGGGGTACAGCGGGGGGTGCACGCGCGCT
CGTTGGGTCGGATTGATTCTACGCGGACCAGCCGAAGAAAGGTAGTAGTG
CACGACCCATGCGCAACACACGCCACTGGGCCGCTTGGCCAGAGACGAAA
GGAGAGACTCAAAAATACAAAATACCAAGATGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5576:7729..9212-

>mRNA_L-elsbetiae_contig5576.13891.1 ID=mRNA_L-elsbetiae_contig5576.13891.1|Name=mRNA_L-elsbetiae_contig5576.13891.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=906bp|location=Sequence derived from alignment at L-elsbetiae_contig5576:7729..9212- (Laminarionema elsbetiae ELsaHSoW15)
GTGGTTTTGAAGATTTCCGTCGGACTACCGGCCGGAGCTGAGAGCGGGGG
TGCCGAAGGGACGTATGGGGTATCAGGGGGTACAACAAAGGCGATCCCAG
CAACGAAGTCCTGGTCAACGCAGGTGGTTTTGAAGATTTCCGTCGGACTA
CCGGCCGGAGCTGAGAGCGGGGGTGCCGAAGGGACGTATGGGGTATCAGG
GGGTACAACAAAGGCGATCCCAGCAACGAAGTCCTGGTCAACGCAGGTTG
TTGCGCAAACGTTCGGCGCCGCGGCGGACTCGAGCACGGCCCTCTGCTTC
CGGGCACACGTGCACATGCCGGCCTTGGTGTTGTCGGTGGTACCGAACGT
CGCAGCCACTGCCGTTGGCGGAGGAGGCGCGATGGAGGTGGCCGTGTCCC
TGAGGAGCCGCGGCACGCACCAGGGCAACAGCAGCGCCGGTTTCGCGGCG
CTCGGTGGCGATAGCGGTAACCACGGTAGTAGTGGTCGCGCTGGGAGCGG
GGAAGATGAGGTGTGGGCGGTCGGAACTGTCCGTGTTCCTCTGCCGCCGT
TCCTGTCGCCGCCGGGAACATGGTGAGTTGTTGCGCAAACGTTCGGCGCC
GCGGCGGACTCGAGCACGGCCCTCTGCTTCCGGGCACACGTGCACATGCC
GGCCTTGGTGTTGTCGGTGGTACCGAACGTCGCAGCCACTGCCGTTGGCG
GAGGAGGCGCGATGGAGGTGGCCGTGTCCCTGAGGAGCCGCGGCACGCAC
CAGGGCAACAGCAGCGCCGGTTTCGCGGCGCTCGGTGGCGATAGCGGTAA
CCACGGTAGTAGTGGTCGCGCTGGGAGCGGGGAAGATGAGGTGTGGGCGG
TCGGAACTGTCCGTGTTCCTCTGCCGCCGTTCCTGTCGCCGCCGGGAACA
TGGTGA
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