mRNA_L-elsbetiae_contig546.13717.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig546.13717.1
Unique NamemRNA_L-elsbetiae_contig546.13717.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig546.13717.1 vs. uniprot
Match: A0A6H5LQT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQT4_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 3.770e-14
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 KAAGKLAVLLATEFPRPCCYLLVACLVGLFGLVSGVERGAPVAWI 135
            +AA  LAVLLATE PRPCCYL+VA L GLFGLVSGVERGAP+AWI
Sbjct:  510 EAAAGLAVLLATECPRPCCYLVVAGLAGLFGLVSGVERGAPIAWI 554
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BLAST of mRNA_L-elsbetiae_contig546.13717.1 vs. uniprot
Match: D8LQ07_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ07_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 2.130e-12
Identity = 37/44 (84.09%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    4 AAGKLAVLLATEFPRPCCYLLVACLVGLFGLVSGVERGAPVAWI 135
            AAG LAVLLATE PRPCCYL+VA L GLFGLVS VERGAP+AWI
Sbjct:  393 AAG-LAVLLATECPRPCCYLVVAGLAGLFGLVSEVERGAPIAWI 435
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig546.13717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LQT4_9PHAE3.770e-1482.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQ07_ECTSI2.130e-1284.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig546contigL-elsbetiae_contig546:16355..16687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size334
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816572.2452526-CDS-L-elsbetiae_contig546:16354..166871622816572.2452526-CDS-L-elsbetiae_contig546:16354..16687Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig546 16355..16687 +
1691683655.971194-CDS-L-elsbetiae_contig546:16354..166871691683655.971194-CDS-L-elsbetiae_contig546:16354..16687Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig546 16355..16687 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig546.13717.1prot_L-elsbetiae_contig546.13717.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig546 16355..16687 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig546.13717.1

>prot_L-elsbetiae_contig546.13717.1 ID=prot_L-elsbetiae_contig546.13717.1|Name=mRNA_L-elsbetiae_contig546.13717.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
KAAGKLAVLLATEFPRPCCYLLVACLVGLFGLVSGVERGAPVAWIGHTRP
LSRCEEPVGMPDGVPRNQFAVDRREMNELSDERDDLEDGGRKSNCRAVHN
STIRGQSSGSW
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mRNA from alignment at L-elsbetiae_contig546:16355..16687+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig546.13717.1 ID=mRNA_L-elsbetiae_contig546.13717.1|Name=mRNA_L-elsbetiae_contig546.13717.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=333bp|location=Sequence derived from alignment at L-elsbetiae_contig546:16355..16687+ (Laminarionema elsbetiae ELsaHSoW15)
AAGGCCGCCGGAAAGCTCGCGGTGCTGCTGGCGACTGAGTTTCCACGCCC
TTGTTGCTACCTTCTGGTGGCGTGCTTGGTGGGCCTTTTCGGCCTGGTTT
CTGGGGTGGAGCGCGGTGCGCCGGTTGCTTGGATTGGGCACACGCGTCCA
CTGTCGCGCTGTGAAGAACCGGTAGGGATGCCGGACGGCGTCCCGCGAAA
CCAGTTTGCAGTGGATCGAAGGGAGATGAATGAGCTGAGTGACGAACGTG
ACGATCTCGAGGATGGTGGGCGAAAAAGCAACTGCCGCGCGGTTCACAAC
AGTACGATCCGTGGACAGTCAAGTGGGTCCTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig546:16355..16687+

>mRNA_L-elsbetiae_contig546.13717.1 ID=mRNA_L-elsbetiae_contig546.13717.1|Name=mRNA_L-elsbetiae_contig546.13717.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig546:16355..16687+ (Laminarionema elsbetiae ELsaHSoW15)
AAGGCCGCCGGAAAGCTCGCGGTGCTGCTGGCGACTGAGTTTCCACGCCC
TTGTTGCTACCTTCTGGTGGCGTGCTTGGTGGGCCTTTTCGGCCTGGTTT
CTGGGGTGGAGCGCGGTGCGCCGGTTGCTTGGATTGGGCACACGCGTCCA
CTGTCGCGCTGTGAAGAACCGGTAGGGATGCCGGACGGCGTCCCGCGAAA
CCAGTTTGCAGTGGATCGAAGGGAGATGAATGAGCTGAGTGACGAACGTG
ACGATCTCGAGGATGGTGGGCGAAAAAGCAACTGCCGCGCGGTTCACAAC
AGTACGATCCGTGGACAGTCAAGTGGGTCCTGGAAGGCCGCCGGAAAGCT
CGCGGTGCTGCTGGCGACTGAGTTTCCACGCCCTTGTTGCTACCTTCTGG
TGGCGTGCTTGGTGGGCCTTTTCGGCCTGGTTTCTGGGGTGGAGCGCGGT
GCGCCGGTTGCTTGGATTGGGCACACGCGTCCACTGTCGCGCTGTGAAGA
ACCGGTAGGGATGCCGGACGGCGTCCCGCGAAACCAGTTTGCAGTGGATC
GAAGGGAGATGAATGAGCTGAGTGACGAACGTGACGATCTCGAGGATGGT
GGGCGAAAAAGCAACTGCCGCGCGGTTCACAACAGTACGATCCGTGGACA
GTCAAGTGGGTCCTGG
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