mRNA_L-elsbetiae_contig5443.13689.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5443.13689.1
Unique NamemRNA_L-elsbetiae_contig5443.13689.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5443.13689.1 vs. uniprot
Match: D7FH97_ECTSI (Similar to chromosome fragility associated gene 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH97_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 2.410e-13
Identity = 30/38 (78.95%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:   13 QYDWIPYSDDD-DEDSRLCNMAMLCGPPGVGKTSAVYG 123
            +YDW+ +SD++ DED+RLCNMAMLCGPPGVGKTSAVYG
Sbjct:  857 EYDWVRFSDEEEDEDARLCNMAMLCGPPGVGKTSAVYG 894
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BLAST of mRNA_L-elsbetiae_contig5443.13689.1 vs. uniprot
Match: A0A8D0BEM7_9SAUR (ATPase_AAA_core domain-containing protein n=1 Tax=Salvator merianae TaxID=96440 RepID=A0A8D0BEM7_9SAUR)

HSP 1 Score: 47.4 bits (111), Expect = 6.410e-5
Identity = 19/34 (55.88%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:   19 DWIPYSDDDDEDSRLCNMAMLCGPPGVGKTSAVY 120
            D+  Y  D +E+S LCN  +L GPPG+GKT+AVY
Sbjct:  780 DFKDYGSDSEEESVLCNTVLLTGPPGIGKTAAVY 813
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BLAST of mRNA_L-elsbetiae_contig5443.13689.1 vs. uniprot
Match: F6ZIX7_MONDO (AAA domain-containing protein n=3 Tax=Didelphinae TaxID=126287 RepID=F6ZIX7_MONDO)

HSP 1 Score: 47.0 bits (110), Expect = 8.760e-5
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:    1 DNKYQYDWIPYSDDDDEDSRLCNMAMLCGPPGVGKTSAVY 120
            D  +  D+   SDD+DE S LCN  ++ GPPGVGKT+AVY
Sbjct: 1138 DLSFSMDFKDLSDDEDESS-LCNTVLITGPPGVGKTAAVY 1176
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5443.13689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FH97_ECTSI2.410e-1378.95Similar to chromosome fragility associated gene 1 ... [more]
A0A8D0BEM7_9SAUR6.410e-555.88ATPase_AAA_core domain-containing protein n=1 Tax=... [more]
F6ZIX7_MONDO8.760e-555.00AAA domain-containing protein n=3 Tax=Didelphinae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5443contigL-elsbetiae_contig5443:505..630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue7.4e-11
Seed eggNOG ortholog2880.D7FH97
KEGG koko:K10754
KEGG Pathwayko03030,ko03420,ko03430,map03030,map03420,map03430
KEGG ModuleM00289,M00295
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.DNA clamp loader activity
EggNOG OGsCOG5275@1,KOG1968@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Exons1
Model size126
Cds size126
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816570.3185267-CDS-L-elsbetiae_contig5443:504..6301622816570.3185267-CDS-L-elsbetiae_contig5443:504..630Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5443 505..630 -
1691683654.7594743-CDS-L-elsbetiae_contig5443:504..6301691683654.7594743-CDS-L-elsbetiae_contig5443:504..630Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5443 505..630 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5443.13689.1prot_L-elsbetiae_contig5443.13689.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5443 505..630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5443.13689.1

>prot_L-elsbetiae_contig5443.13689.1 ID=prot_L-elsbetiae_contig5443.13689.1|Name=mRNA_L-elsbetiae_contig5443.13689.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=42bp
DNKYQYDWIPYSDDDDEDSRLCNMAMLCGPPGVGKTSAVYG*
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mRNA from alignment at L-elsbetiae_contig5443:505..630-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5443.13689.1 ID=mRNA_L-elsbetiae_contig5443.13689.1|Name=mRNA_L-elsbetiae_contig5443.13689.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=126bp|location=Sequence derived from alignment at L-elsbetiae_contig5443:505..630- (Laminarionema elsbetiae ELsaHSoW15)
GACAACAAATATCAGTACGACTGGATTCCGTACTCGGACGACGACGATGA
GGACTCCCGCCTCTGCAACATGGCCATGCTGTGTGGCCCGCCGGGGGTCG
GCAAGACAAGCGCCGTGTACGGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5443:505..630-

>mRNA_L-elsbetiae_contig5443.13689.1 ID=mRNA_L-elsbetiae_contig5443.13689.1|Name=mRNA_L-elsbetiae_contig5443.13689.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=252bp|location=Sequence derived from alignment at L-elsbetiae_contig5443:505..630- (Laminarionema elsbetiae ELsaHSoW15)
GACAACAAATATCAGTACGACTGGATTCCGTACTCGGACGACGACGATGA
GGACTCCCGCCTCTGCAACATGGCCATGCTGTGTGGCCCGCCGGGGGTCG
GCAAGACAAGCGCCGTGTACGGGTGAGACAACAAATATCAGTACGACTGG
ATTCCGTACTCGGACGACGACGATGAGGACTCCCGCCTCTGCAACATGGC
CATGCTGTGTGGCCCGCCGGGGGTCGGCAAGACAAGCGCCGTGTACGGGT
GA
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