mRNA_L-elsbetiae_contig5421.13657.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5421.13657.1
Unique NamemRNA_L-elsbetiae_contig5421.13657.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5421.13657.1 vs. uniprot
Match: D8LRE3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE3_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 1.480e-47
Identity = 91/154 (59.09%), Postives = 109/154 (70.78%), Query Frame = 3 
Query:  372 RSASSSSLREEEWHMPAVLLTALEANGVILPTPLQEAVWKGGRGHARVDLIVHGRPGDETATAFCVPILERVLERYPAGLSPEGGGGSAGMPARAPSXXXXXXXXXXGA--QVYELVALVLTRTREMATDIAETLACLGQNIPSLSVATLIGGV 827
            R  S++SLRE + ++PA LL +L+ANGV LPTPLQE+VW  GRG  R DL+VH RPGDETATA+CVP+LERVLERYP  L      G     ARAP+          GA  + YE+VALVLTRTR+MA+D+   L  LG+ IPSLSVATLIGGV
Sbjct:    3 RCGSTASLREAKRNIPAELLASLDANGVTLPTPLQESVWSIGRGAGREDLLVHARPGDETATAYCVPVLERVLERYPQPLC-----GDCEQAARAPAPSGGGGAACTGADREKYEVVALVLTRTRDMASDVTTMLTRLGEGIPSLSVATLIGGV 151
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BLAST of mRNA_L-elsbetiae_contig5421.13657.1 vs. uniprot
Match: A0A6H5KKW2_9PHAE (DEAD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKW2_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 3.370e-10
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 3 
Query:  366 VPRSASSSSLREEEWHMPAVLLTALEANGVILPTPLQEAVWKGGRGHARVDLIVH 530
            V RS S++SLRE + ++PAVLL +LEANGV LPTPLQE+VW  GRG  R DL+VH
Sbjct:  669 VRRSGSTASLREAKRNIPAVLLASLEANGVTLPTPLQESVWSIGRGADREDLLVH 723
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BLAST of mRNA_L-elsbetiae_contig5421.13657.1 vs. uniprot
Match: D8LRE2_ECTSI (DEAD domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE2_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 8.160e-9
Identity = 57/181 (31.49%), Postives = 86/181 (47.51%), Query Frame = 3 
Query:  414 MPAVLLTALEANGVILPTPLQEAVWKGGRGHARVDLIVHGRPGDETATAFCVPILERV----------LERYP-------AGLS--------------PEGGGGSAGMPARAPSXXXXXXXXXXGAQVYELVALVLTRTREMATDIAETLACLGQ-NIPSLSVATLIGGVPVAENHKALAA 860
            +P  L  +LEA  V + TPLQ +VW   R  A  DL++  + G ET TA  V +L+R+          L RY        +GLS                  G S      +            G    +L ALVLT+ RE+A  + +TL  LG+ ++P+L++A+L+GG+ V+EN + L+A
Sbjct:    3 LPPALQKSLEAEEVQV-TPLQASVWSEAR--AGADLLIEAKSGPETTTALAVLVLDRLVAAISSAEAALPRYARKRTSSFSGLSGLNRIVSSVLRTTSSNNNGNSNVKDGESDLSTANGSSGSGGLLKPQLCALVLTKNREVAAGVKDTLLRLGKTSVPNLTIASLVGGIAVSENAQTLSA 180
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BLAST of mRNA_L-elsbetiae_contig5421.13657.1 vs. uniprot
Match: A0A1C2G425_9GAMM (Uncharacterized protein n=3 Tax=Acidiferrobacter TaxID=986106 RepID=A0A1C2G425_9GAMM)

HSP 1 Score: 54.7 bits (130), Expect = 7.950e-5
Identity = 45/152 (29.61%), Postives = 63/152 (41.45%), Query Frame = 3 
Query:  411 HMPAVLLTALEANGVILPTPLQEAVWKG---GRGHARVDLIVHGRPGDETATAFCVPILERV-LERYPAGLSPEGGGGSAGMPARAPSXXXXXXXXXXGAQVYELVALVLTRTREMATDIAETLACLGQNIPSLSVATLIGGVPVAENHKAL 854
            ++ A LL ALEA G   PTP+Q +       GR     D++   + G     AF +P L+R+   R PAG  P                                 ALVLT TRE+AT + +  +   + +P L   T++GGVP     K L
Sbjct:    7 NLAAPLLNALEAAGYEKPTPIQASAIPAVLAGR-----DVMACAQTGTGKTAAFLLPTLQRLETRRAPAGRGPR--------------------------------ALVLTPTRELATQVRDAASVYAKGLPHLRFGTIVGGVPYPPQEKLL 121
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5421.13657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LRE3_ECTSI1.480e-4759.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKW2_9PHAE3.370e-1065.45DEAD domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LRE2_ECTSI8.160e-931.49DEAD domain-containing protein (Fragment) n=1 Tax=... [more]
A0A1C2G425_9GAMM7.950e-529.61Uncharacterized protein n=3 Tax=Acidiferrobacter T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5421contigL-elsbetiae_contig5421:9839..12165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score67.4
Seed ortholog evalue1.2e-08
Seed eggNOG ortholog1392838.AWNM01000050_gene2146
Preferred namesrmB
KEGG koko:K05590,ko:K11927
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003725,GO:0003727,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006807,GO:0006996,GO:0008026,GO:0008104,GO:0008143,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010501,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0032991,GO:0033036,GO:0033592,GO:0034622,GO:0034641,GO:0035770,GO:0036464,GO:0042254,GO:0042255,GO:0042273,GO:0042623,GO:0043170,GO:0043186,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0045495,GO:0046483,GO:0051179,GO:0060293,GO:0065003,GO:0070035,GO:0070717,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097617,GO:0140098,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.Belongs to the DEAD box helicase family
EggNOG OGs1MU49@1224,2VH16@28216,3T2KW@506,COG0513@1,COG0513@2
EC3.6.4.13
COG Functional cat.JKL
Best tax levelAlcaligenaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03019
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-21_002750.1
Exons3
Model size862
Cds size846
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5421.13657.1prot_L-elsbetiae_contig5421.13657.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5421 9853..12165 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816567.2865121-UTR-L-elsbetiae_contig5421:9838..98521622816567.2865121-UTR-L-elsbetiae_contig5421:9838..9852Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5421 9839..9852 +
1691683652.5280948-UTR-L-elsbetiae_contig5421:9838..98521691683652.5280948-UTR-L-elsbetiae_contig5421:9838..9852Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5421 9839..9852 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816567.2989497-CDS-L-elsbetiae_contig5421:9852..103681622816567.2989497-CDS-L-elsbetiae_contig5421:9852..10368Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5421 9853..10368 +
1691683652.539455-CDS-L-elsbetiae_contig5421:9852..103681691683652.539455-CDS-L-elsbetiae_contig5421:9852..10368Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5421 9853..10368 +
1622816567.3109174-CDS-L-elsbetiae_contig5421:10987..112181622816567.3109174-CDS-L-elsbetiae_contig5421:10987..11218Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5421 10988..11218 +
1691683652.5484078-CDS-L-elsbetiae_contig5421:10987..112181691683652.5484078-CDS-L-elsbetiae_contig5421:10987..11218Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5421 10988..11218 +
1622816567.3222587-CDS-L-elsbetiae_contig5421:12066..121651622816567.3222587-CDS-L-elsbetiae_contig5421:12066..12165Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5421 12067..12165 +
1691683652.557353-CDS-L-elsbetiae_contig5421:12066..121651691683652.557353-CDS-L-elsbetiae_contig5421:12066..12165Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5421 12067..12165 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5421.13657.1

>prot_L-elsbetiae_contig5421.13657.1 ID=prot_L-elsbetiae_contig5421.13657.1|Name=mRNA_L-elsbetiae_contig5421.13657.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=282bp
MVAAVGKQRNLCPSAGRGGGGMGSSSSSSSSSSSSSLAPSPGAVVVPSSE
RRLAVPAPAGAGTGNPPRGAETEEELETRRRTGESVAVAEEKGKGQEHEA
EPIQRKTTPPQTQAHLLVPRSASSSSLREEEWHMPAVLLTALEANGVILP
TPLQEAVWKGGRGHARVDLIVHGRPGDETATAFCVPILERVLERYPAGLS
PEGGGGSAGMPARAPSSEATTPPPPPGAQVYELVALVLTRTREMATDIAE
TLACLGQNIPSLSVATLIGGVPVAENHKALAA
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mRNA from alignment at L-elsbetiae_contig5421:9839..12165+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5421.13657.1 ID=mRNA_L-elsbetiae_contig5421.13657.1|Name=mRNA_L-elsbetiae_contig5421.13657.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2327bp|location=Sequence derived from alignment at L-elsbetiae_contig5421:9839..12165+ (Laminarionema elsbetiae ELsaHSoW15)
GGGATGTTGTGACGATGGTGGCGGCGGTTGGCAAGCAGCGGAATCTTTGT
CCGTCGGCGGGAAGAGGAGGAGGAGGAATGGGCTCGTCGTCGTCGTCGTC
TTCCTCTTCGTCTTCCTCGTCGTTGGCGCCGTCCCCGGGTGCGGTGGTAG
TCCCGAGCTCCGAGAGACGGCTAGCGGTGCCGGCGCCAGCGGGCGCGGGG
ACGGGCAATCCTCCCCGCGGCGCCGAAACGGAGGAGGAGCTCGAGACGCG
GCGACGAACCGGCGAATCGGTGGCAGTGGCGGAGGAGAAGGGGAAGGGAC
AGGAGCACGAGGCTGAGCCCATTCAGAGAAAGACGACGCCGCCGCAGACG
CAGGCGCACCTGCTGGTGCCAAGGTCGGCGTCTTCCTCTTCGCTGAGGGA
GGAGGAGTGGCACATGCCGGCCGTGCTGCTTACCGCGCTCGAGGCTAACG
GCGTCATTCTGCCGACGCCCCTGCAGGAAGCGGTCTGGAAGGGCGGCCGG
GGGCACGCGAGGGTGGACCTTATCGTCCACGTACGTGTCTCGTCTTCTTG
TGTTGTGTGTTGTGTGTGCGTTTAATTGTCTTTGTTGTGTCGAATTTGTT
TTTGATGGTGTTTTGTTTTTGGACTTGTTTCCAAAAGAGTGGGCGTGTGC
GTGGTTTGAGCTGGCTAGTCTCGTGGGTTGTTCTTGCCCTGTCACCTCCA
CCATTGGGGGAGCTTGTTTTCCCTCTCTTCTGTGGGTCTCTGCCCCGCTC
CCCTACTCGCCCTCTCCAACCGGAACAGCTCCCCCCTTCCATCGGGGTTG
CGTTTCCCCTGCGAGTGAGTGACGTATTTCGCCCAAAGCTCTTGCCCTCC
TCTCCACTCCGCTCGCCCCCTTTGCACACATGTGCACTACCACCGCCGCC
GCCGCCGTGGTTTGCACCATGCTAGTACTGCTGTGCACCACTTGGTTTGA
ATGCACCATACCGCCGTGTCCCCCCCCCTCTCTCTCTGCCTTGCTTGGAC
AAGACCGGCTTAACAAAGGGTGGCGAACCAAGGGGAGGACCTACTTCTAT
GTATTTAGAATACAAGATGTTATCTCGCCCACGGGGTAGTTTGTTGGCTG
ACGTGGAGGTTGATGCTGATGCCTCCCACGACTTGGTTTGGAATTCCAGG
GACGGCCCGGAGACGAAACCGCCACGGCCTTCTGCGTGCCGATCCTGGAG
CGAGTCCTGGAGCGCTATCCCGCCGGTCTTTCCCCCGAGGGAGGAGGAGG
GTCGGCGGGGATGCCAGCCAGGGCGCCCTCGTCGGAGGCTACAACCCCTC
CTCCTCCTCCAGGCGCTCAGGTCTACGAGCTGGTCGCGCTGGTGCTGACG
AGGACCAGAGAGATGGCCACCGATATTGCCGTGAGTCCGCAATGTGTGTG
CTGCTGTCTCACGACACGTGTGTTGTTGCTGTTGTTGTTGTTTCTCAAGT
TAGCTCTCTCCTGAATATCTCCTAAATTGTAGTCCAAAAACATCCATGGG
GCCCCGTGGTCACAAAAACACTTAAGGGGGCACACTCGACGGCGCAGAAG
AAAAAATGTGCGTACACACACATGTTGTATGTATCTGTGCTTGGGAGCGG
GCGGACTGCGGGCAGGTTTTTGTAGCATCATCATGACGTCCCAGAGCACG
TTTTTTTTTTTCTGTTGTGCTTTTATACACAGCAAACACTTTGCTGTTGT
TGTCATTTCTCTGCTGCGGTTGCGGCTGGCTGCCTGTGTGTGTGTGTGTG
TGTTTGTCTCCTCTCTGGCCGTGGGTGCAACTTTACGGTAAAACCGTGTG
TTGCGTATTGCATGCATGTGTGTCCGCAGCACGGGCTGAGATGACGGCTT
GTCTGTCGCGGTGACGGCCGGTGTTGTCGCTGCTCTTGGAGCGGAACGGA
AAGGTGTTCTATAACCCTCTTCTCTTCTGTTTCTTTCGCCATCGGTTTCG
TTCGCAATCGGGAGCGAGAGTACTTAATAGTTAAGAAGTAATAGCTATTT
CTCGCCTATGCTGTTTCGTTCGCTTTTCTTCACACGCAAGGGTGAAGCAT
GCTGACACGCGATGTTTGTACCCCCCCCCTCCCCCTCCCCGCCCAACCTC
GTGTAGCGCAGGAGAATCCTACCGTGCACTGCAAGCGTGCTCATATACAC
CCGGTCGCCTTCACCCTACGTACCCCCCCCCCCCCTTCCTGCAATTTTCT
CTAAAATATGTACCTAAATACTCGGCAGGAAACCCTGGCGTGCCTCGGCC
AAAACATCCCGAGCCTCTCCGTGGCCACGCTCATCGGAGGGGTCCCGGTG
GCGGAAAACCACAAGGCCCTGGCCGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5421:9839..12165+

>mRNA_L-elsbetiae_contig5421.13657.1 ID=mRNA_L-elsbetiae_contig5421.13657.1|Name=mRNA_L-elsbetiae_contig5421.13657.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1692bp|location=Sequence derived from alignment at L-elsbetiae_contig5421:9839..12165+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGCGGCGGTTGGCAAGCAGCGGAATCTTTGTCCGTCGGCGGGAAG
AGGAGGAGGAGGAATGGGCTCGTCGTCGTCGTCGTCTTCCTCTTCGTCTT
CCTCGTCGTTGGCGCCGTCCCCGGGTGCGGTGGTAGTCCCGAGCTCCGAG
AGACGGCTAGCGGTGCCGGCGCCAGCGGGCGCGGGGACGGGCAATCCTCC
CCGCGGCGCCGAAACGGAGGAGGAGCTCGAGACGCGGCGACGAACCGGCG
AATCGGTGGCAGTGGCGGAGGAGAAGGGGAAGGGACAGGAGCACGAGGCT
GAGCCCATTCAGAGAAAGACGACGCCGCCGCAGACGCAGGCGCACCTGCT
GGTGCCAAGGTCGGCGTCTTCCTCTTCGCTGAGGGAGGAGGAGTGGCACA
TGCCGGCCGTGCTGCTTACCGCGCTCGAGGCTAACGGCGTCATTCTGCCG
ACGCCCCTGCAGGAAGCGGTCTGGAAGGGCGGCCGGGGGCACGCGAGGGT
GGACCTTATCGTCCACATGGTGGCGGCGGTTGGCAAGCAGCGGAATCTTT
GTCCGTCGGCGGGAAGAGGAGGAGGAGGAATGGGCTCGTCGTCGTCGTCG
TCTTCCTCTTCGTCTTCCTCGTCGTTGGCGCCGTCCCCGGGTGCGGTGGT
AGTCCCGAGCTCCGAGAGACGGCTAGCGGTGCCGGCGCCAGCGGGCGCGG
GGACGGGCAATCCTCCCCGCGGCGCCGAAACGGAGGAGGAGCTCGAGACG
CGGCGACGAACCGGCGAATCGGTGGCAGTGGCGGAGGAGAAGGGGAAGGG
ACAGGAGCACGAGGCTGAGCCCATTCAGAGAAAGACGACGCCGCCGCAGA
CGCAGGCGCACCTGCTGGTGCCAAGGTCGGCGTCTTCCTCTTCGCTGAGG
GAGGAGGAGTGGCACATGCCGGCCGTGCTGCTTACCGCGCTCGAGGCTAA
CGGCGTCATTCTGCCGACGCCCCTGCAGGAAGCGGTCTGGAAGGGCGGCC
GGGGGCACGCGAGGGTGGACCTTATCGTCCACGGACGGCCCGGAGACGAA
ACCGCCACGGCCTTCTGCGTGCCGATCCTGGAGCGAGTCCTGGAGCGCTA
TCCCGCCGGTCTTTCCCCCGAGGGAGGAGGAGGGTCGGCGGGGATGCCAG
CCAGGGCGCCCTCGTCGGAGGCTACAACCCCTCCTCCTCCTCCAGGCGCT
CAGGTCTACGAGCTGGTCGCGCTGGTGCTGACGAGGACCAGAGAGATGGC
CACCGATATTGCCGGACGGCCCGGAGACGAAACCGCCACGGCCTTCTGCG
TGCCGATCCTGGAGCGAGTCCTGGAGCGCTATCCCGCCGGTCTTTCCCCC
GAGGGAGGAGGAGGGTCGGCGGGGATGCCAGCCAGGGCGCCCTCGTCGGA
GGCTACAACCCCTCCTCCTCCTCCAGGCGCTCAGGTCTACGAGCTGGTCG
CGCTGGTGCTGACGAGGACCAGAGAGATGGCCACCGATATTGCCGAAACC
CTGGCGTGCCTCGGCCAAAACATCCCGAGCCTCTCCGTGGCCACGCTCAT
CGGAGGGGTCCCGGTGGCGGAAAACCACAAGGCCCTGGCCGCCGAAACCC
TGGCGTGCCTCGGCCAAAACATCCCGAGCCTCTCCGTGGCCACGCTCATC
GGAGGGGTCCCGGTGGCGGAAAACCACAAGGCCCTGGCCGCC
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