mRNA_L-elsbetiae_contig54.13620.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig54.13620.1
Unique NamemRNA_L-elsbetiae_contig54.13620.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig54.13620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig54contigL-elsbetiae_contig54:52923..53307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size385
Cds size366
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816563.4589744-CDS-L-elsbetiae_contig54:52922..532881622816563.4589744-CDS-L-elsbetiae_contig54:52922..53288Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig54 52923..53288 +
1691683649.8800447-CDS-L-elsbetiae_contig54:52922..532881691683649.8800447-CDS-L-elsbetiae_contig54:52922..53288Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig54 52923..53288 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816563.4714816-UTR-L-elsbetiae_contig54:53288..533071622816563.4714816-UTR-L-elsbetiae_contig54:53288..53307Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig54 53289..53307 +
1691683649.8911624-UTR-L-elsbetiae_contig54:53288..533071691683649.8911624-UTR-L-elsbetiae_contig54:53288..53307Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig54 53289..53307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig54.13620.1prot_L-elsbetiae_contig54.13620.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig54 52923..53288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig54.13620.1

>prot_L-elsbetiae_contig54.13620.1 ID=prot_L-elsbetiae_contig54.13620.1|Name=mRNA_L-elsbetiae_contig54.13620.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
QRRRLPIDPKGARKPGPGGRWVGKALIEQPYRAERSNLRSRSIVPFVAVN
VHSLQSLHKPTISRHGRSYPKGQGVKRRVARPTTCAPVATIPRGRKMPAS
GLHMDQKSTLYRERRRARMYR*
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mRNA from alignment at L-elsbetiae_contig54:52923..53307+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig54.13620.1 ID=mRNA_L-elsbetiae_contig54.13620.1|Name=mRNA_L-elsbetiae_contig54.13620.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=385bp|location=Sequence derived from alignment at L-elsbetiae_contig54:52923..53307+ (Laminarionema elsbetiae ELsaHSoW15)
CAGAGACGACGATTGCCCATCGATCCGAAAGGAGCACGAAAACCGGGGCC
GGGTGGTCGATGGGTGGGCAAGGCGCTAATTGAGCAACCATACCGAGCCG
AACGATCAAATCTACGGTCGCGTTCAATCGTACCTTTTGTCGCGGTAAAT
GTGCACTCCCTGCAATCTCTTCACAAGCCTACTATTTCGAGACACGGCAG
GAGCTACCCCAAGGGACAGGGGGTGAAGAGGAGAGTTGCAAGACCAACAA
CGTGTGCCCCGGTGGCGACAATCCCACGTGGAAGGAAAATGCCCGCTTCT
GGCCTGCACATGGACCAAAAAAGCACACTGTACCGCGAACGACGGCGCGC
TCGCATGTATAGGTAGATAGATACCTGCAGCAGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig54:52923..53307+

>mRNA_L-elsbetiae_contig54.13620.1 ID=mRNA_L-elsbetiae_contig54.13620.1|Name=mRNA_L-elsbetiae_contig54.13620.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig54:52923..53307+ (Laminarionema elsbetiae ELsaHSoW15)
CAGAGACGACGATTGCCCATCGATCCGAAAGGAGCACGAAAACCGGGGCC
GGGTGGTCGATGGGTGGGCAAGGCGCTAATTGAGCAACCATACCGAGCCG
AACGATCAAATCTACGGTCGCGTTCAATCGTACCTTTTGTCGCGGTAAAT
GTGCACTCCCTGCAATCTCTTCACAAGCCTACTATTTCGAGACACGGCAG
GAGCTACCCCAAGGGACAGGGGGTGAAGAGGAGAGTTGCAAGACCAACAA
CGTGTGCCCCGGTGGCGACAATCCCACGTGGAAGGAAAATGCCCGCTTCT
GGCCTGCACATGGACCAAAAAAGCACACTGTACCGCGAACGACGGCGCGC
TCGCATGTATAGGTAGCAGAGACGACGATTGCCCATCGATCCGAAAGGAG
CACGAAAACCGGGGCCGGGTGGTCGATGGGTGGGCAAGGCGCTAATTGAG
CAACCATACCGAGCCGAACGATCAAATCTACGGTCGCGTTCAATCGTACC
TTTTGTCGCGGTAAATGTGCACTCCCTGCAATCTCTTCACAAGCCTACTA
TTTCGAGACACGGCAGGAGCTACCCCAAGGGACAGGGGGTGAAGAGGAGA
GTTGCAAGACCAACAACGTGTGCCCCGGTGGCGACAATCCCACGTGGAAG
GAAAATGCCCGCTTCTGGCCTGCACATGGACCAAAAAAGCACACTGTACC
GCGAACGACGGCGCGCTCGCATGTATAGGTAG
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