Homology
BLAST of mRNA_L-elsbetiae_contig5393.13605.1 vs. uniprot
Match:
D7FXT3_ECTSI (TFIID and SAGA subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT3_ECTSI)
HSP 1 Score: 218 bits (554), Expect = 1.560e-64
Identity = 115/161 (71.43%), Postives = 123/161 (76.40%), Query Frame = 1
Query: 1 VVRCGPGDAFPAALQIDPPDE-------------------ESPAAAATDAPGAGKRASVKERDLKWAAAPPMEVALLKQTERDVSLPLKPPPQPDPADNWPYLRLMLRPLDSSQLKDTLSTPEGGARPFLGNPLSPHVVMLTFYNALDTLCCLKPTRDGMQ 426
VVRCGP DAFPAAL+ D + PAA AT A G G V+E DLKWAAAPPMEVAL+KQTERDVSLPLKPPPQPDP +NWPYLRL LRPLDS+QLKDTLSTPEGGARPFL NPLSPHVVM+TFYNA+DTLCCLKPTRDGMQ
Sbjct: 244 VVRCGPDDAFPAALRPRSSDXXXXXXXXXXXXXXXXXKATKEPAAPATTA-GRGGGRGVQEEDLKWAAAPPMEVALMKQTERDVSLPLKPPPQPDPPENWPYLRLALRPLDSAQLKDTLSTPEGGARPFLANPLSPHVVMVTFYNAVDTLCCLKPTRDGMQ 403
BLAST of mRNA_L-elsbetiae_contig5393.13605.1 vs. uniprot
Match:
A0A6H5JH71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH71_9PHAE)
HSP 1 Score: 166 bits (421), Expect = 7.360e-47
Identity = 115/283 (40.64%), Postives = 125/283 (44.17%), Query Frame = 1
Query: 1 VVRCGPGDAFPAALQIDPPDEE-----------SPAAAATDAPGAGKRAS-------VKERDLKWAAAPPMEVALLKQTERD--------------------------------------------------------------------------------------------------------------------------VSLPLKPPPQPDPADNWPYLRLMLRPLDSSQLKDTLSTPEGGARPFLGNPLSPHVVMLTFYNALDTLCCLKPTRDGMQV 429
VVRCGP DAFPAAL+ DE+ SP + AT P A V+E DLKWAAAPPMEVALLKQTERD VSLPLKPPPQPDP++NWPYLRL LRPLDS+QLKDTLSTPEGGARPFL NPLSPHVVM+TF+NA+DTLCCLKPTRDGMQV
Sbjct: 42 VVRCGPDDAFPAALRPRSSDEDKSKEESEAARDSPPSKATKEPVAXXXXXXXXXXXXVEEEDLKWAAAPPMEVALLKQTERDAAASGLYYPLSLEPKATKTDPPTTTAAVPSRPTATSPGTNGTANSPPAVATGLTVNTTGXXXXXXXXXXXXXXXXXXXXXXSAIPTXXXXXXXXXXRASRVAAAAEVTEATARRHGGLRQKQVSLPLKPPPQPDPSENWPYLRLALRPLDSAQLKDTLSTPEGGARPFLANPLSPHVVMVTFFNAVDTLCCLKPTRDGMQV 324
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5393.13605.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.56e-64 / Id = 71.43 Expect = 7.36e-47 / Id = 40.64 Sequence D7FXT3_ECTSI A0A6H5JH71_9PHAE
Match Name E-value Identity Description
D7FXT3_ECTSI 1.560e-64 71.43 TFIID and SAGA subunit n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JH71_9PHAE 7.360e-47 40.64 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota
Seed ortholog score 221.5
Seed ortholog evalue 2.6e-55
Seed eggNOG ortholog 2880.D7FXT3
KEGG ko ko:K03130
KEGG Pathway ko03022,ko05168,map03022,map05168
Hectar predicted targeting category other localisation
GOs GO:0000003,GO:0000280,GO:0000428,GO:0001673,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005730,GO:0006139,GO:0006351,GO:0006352,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007127,GO:0007140,GO:0007141,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010468,GO:0016043,GO:0016070,GO:0016591,GO:0018130,GO:0019222,GO:0019438,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030154,GO:0030880,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0044798,GO:0046483,GO:0048232,GO:0048285,GO:0048468,GO:0048515,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0051321,GO:0051704,GO:0055029,GO:0060255,GO:0061695,GO:0061982,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090575,GO:0097659,GO:0140013,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1903046,GO:1990234
EggNOG free text desc. transcription initiation from RNA polymerase II promoter
EggNOG OGs COG2319@1,KOG0263@2759
COG Functional cat. Q
Best tax level Eukaryota
Best eggNOG OG NA|NA|NA
BRITE ko00000,ko00001,ko03021,ko03036
Exons 3
Model size 429
Cds size 429
Stop 0
Start 0
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816562.657724-CDS-L-elsbetiae_contig5393:604..720 1622816562.657724-CDS-L-elsbetiae_contig5393:604..720 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5393 605..720 -
1691683649.3165934-CDS-L-elsbetiae_contig5393:604..720 1691683649.3165934-CDS-L-elsbetiae_contig5393:604..720 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5393 605..720 -
1622816562.674686-CDS-L-elsbetiae_contig5393:2424..2545 1622816562.674686-CDS-L-elsbetiae_contig5393:2424..2545 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5393 2425..2545 -
1691683649.330666-CDS-L-elsbetiae_contig5393:2424..2545 1691683649.330666-CDS-L-elsbetiae_contig5393:2424..2545 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5393 2425..2545 -
1622816562.6904068-CDS-L-elsbetiae_contig5393:4114..4306 1622816562.6904068-CDS-L-elsbetiae_contig5393:4114..4306 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5393 4115..4306 -
1691683649.3426363-CDS-L-elsbetiae_contig5393:4114..4306 1691683649.3426363-CDS-L-elsbetiae_contig5393:4114..4306 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5393 4115..4306 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5393.13605.1
>prot_L-elsbetiae_contig5393.13605.1 ID=prot_L-elsbetiae_contig5393.13605.1|Name=mRNA_L-elsbetiae_contig5393.13605.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
VVRCGPGDAFPAALQIDPPDEESPAAAATDAPGAGKRASVKERDLKWAAA PPMEVALLKQTERDVSLPLKPPPQPDPADNWPYLRLMLRPLDSSQLKDTL STPEGGARPFLGNPLSPHVVMLTFYNALDTLCCLKPTRDGMQV back to top mRNA from alignment at L-elsbetiae_contig5393:605..4306-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5393.13605.1 ID=mRNA_L-elsbetiae_contig5393.13605.1|Name=mRNA_L-elsbetiae_contig5393.13605.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3702bp|location=Sequence derived from alignment at L-elsbetiae_contig5393:605..4306- (Laminarionema elsbetiae ELsaHSoW15)GTTGTTCGATGCGGGCCCGGTGATGCCTTTCCCGCCGCCCTCCAGATCGA
CCCTCCCGACGAGGAATCGCCGGCGGCGGCGGCAACCGACGCGCCGGGCG
CGGGGAAAAGAGCCAGTGTGAAGGAGAGGGACCTGAAGTGGGCCGCCGCG
CCTCCGATGGAGGTGGCGCTTTTGAAGCAAACGGAGAGAGAC GTGAGTTC
CGTCAACTTGCTTAAACGGGGCAGAGGCGGCGGCGGCGGCGGCGTTTTTT
TTTGGGTGTCGGTGCTCCTCCTCTGCTGCTCTTTACCGCCCGCCACTTTT
TTCCATAGCCGCTTTACTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTT
CTCTTTTTTTTGTTGCTGCTGCTTCTCAGTTTTTTATCACAATTGTCTCT
CTTTCTCTCTCTCTCTCTTACTCTCTTTCTCTCTTACTTACTGTCCCTCC
GCCCCTCAATCTGTCCTCCACAACACGCCGCCCGCACCCAAAATGGGGTC
CCCACAGGCGGCCGCCTCGGGCCTGTACTACCCCCTCAGTCTCGAGCCGA
AGGCGGCCAAGAAGGGCGCTGATCCTGCGTCGCCGGCACGCCCGCCAGCG
GCATTAGCCGGAGTTTCGGCAGCAGCGACACCGACACCGAACGGGGCCGC
CAACAGCTCCTCGCCCACCGGCGGCGCCGGGCTGACGGTAAACACTGACA
GCGGCGATGGGGCGGCGGGGGCGGCCGCGGCGGCGGCGGCGGCAGCGGCG
GCCATCCCCACGGGGAGCGCGGCGGCAGCGGCGGCGAGGGCGCGCGCGAG
CCGGGTGGCGGCGGCGTCCGAGGTTACTGAGGCCACGGCGCGGCGGCACG
GCGGCTTGCGGCAAAGACAGGTATGGTATATGTGTGTATTTAGGAGTAAT
TCATTGGATTGGGTTGGAAAACATGCTTGTTTGTTTGTCTGGCAGGCATG
CTAGAGAAGCAGCAGGCACGCAGTGTAAGAGTGCCGGAGGGGGCAAGGAT
AGTAGTGGTTTTGATTTGATTCGCGGGTCTTTTATTTTTTCCCCCGTCTT
GCGTCACCTACGGTATGTAGGTATGTACATTGAACTAAGAAATATACGGG
ATGTTGCAGCCCAGGTGCTGTGCAGCGGGTCGCGGCATAAACAGGCTTGT
GCCATTATCGGAAAGCACGTTATCGCACGGGCTTTATTCAGAGTACAGCA
GCAGTAGTACCGTAGGTGACACTTGCAGGATACCACCCACCCCCTGGACA
GATTTTCAAAGCCCGGTTCCTCCCCAGCAAGGAGAGTGCCAGTGCCGAAA
GGGGATGTCGTTGGAAAGATCTAGCCGAGGGCTGTCCGAAAATGTGTCGT
TTGGTGCTGGCACCCTCTTCGTTGCGGAGTAATATTGTAGAGCTCTAAAA
GTCAGTCCAGGGGGGTGTCTGGTATCTTGTGTCACCTACGGTAGGCTATT
TTGCCTGGTCCGCTCATGCGTGGAGGGCACCTTAAGTCGTTCTTCTGTTT
AGAGCACGTTGAGGCGCTTCTTTTGTTGCCTCCACTTCGTCGTCGCTCGC
GCTCTGCACTTTTAACTCCTAGATAGCGTCTCAGTTTTCCGACTCCGCTA
CCGCCGTTGTTGGTTTCTGCCAGCACGTCCGTCCACCATGTTAGTTGTTC
TTTTTCCACACTACTGTTCAAGCGTATCAACATATACATGCAGATCCAAC
CTTCCATGCTCCGTGCCCCCCCTCCCCCTCCAAACCCATGCGCGGCGCCG
CCGCTCATCAGGTGAGCCTTCCGCTGAAGCCGCCGCCGCAGCCGGACCCT
GCCGATAACTGGCCCTACCTCAGGCTAATGCTTCGGCCGCTCGACTCCAG
CCAGCTCAAGGATACGCTCTCTACTCCCGAAG GTGATTTTGTTCGTGTTT
TCGATTCTTGTGGCTTTCGGTTCTTGTGCTTGGGGGGGTTGTTTTCCGCC
CATATGGCGGAGCGCGGTACCTACGATATCGCTTTCTGTCATAATTTGCT
ATAGCACTATTGTGCGGAGTCCCCAACAGCTACTGCTGTCGGAGTGTTGT
AGGGTGGCTTTCGATGGTTTGGATGCTGTTGGTTGCTTGCGTTTTTTTGT
GTGTGCTGGCTAGCTGGTGGAAGTTTTTTGCAATCACCGGAGCCCCCTAC
GCGTGTTTTGTTGGGGCTGTTTTATTTCAAGCGTTACTTTGGAATATGTG
ACTGCCGCCTCGGTGTGCTCTCTATCAGCGCCTACCGTAGGTGACACAAG
ATACCACCCCCCCCTGGACAGATTTTCCAAGCTCGATTCGTTCCCAGCAA
GAAGAGTTCCAGCGCCGGAATGGAGTGGGGTTGAAAAATCTGTCCAGGGG
TGGGGGTGGTATCTTGTGTCACCTACGGTAGGCGCTGATACAGAGCACAC
CGACGCCGGAATGGAGTGGGGTTGAAAAGATCTGGTCGAGGGCTGTCCGA
AAATGTGTCGTTTGTTACTGGCACCCTCTCCGTTACGGAGGAATCGAGCT
CTAAAACTCAGTCCAAGGAGGGGGGGTGGTATCCTGTGTCACCTACGGTA
GACCGACCCTCCCCCGAGTGTTTGCAATATACTGGGAGACGCTGCGCATG
GCTGATTACACGCCTCGCCGGCGTCTGTCCGTCTTTGGCATTTGTTTTGA
CGCGTTTGGTGGTCGCATGACACGCGCTTCGTCCTGTTTCCGATCACCGT
CAATACTTTTCAATTTTCGCTCTCGCGCGTTGTGTTCGGCTTCGGTGTTC
CAAGAAAGAAAAACGCCTCTTTTTTTCTTTGTGTCGTTTCCGGTGATTGC
TCTCTCGAGAGCTCCCCCGGTTCGGTGCTCTAGCAGTTCGGTTTGCTGTT
GTTGTCTTCACACTAAAAACCGCCCCGATCTCTCTATCCAGTACACCTCC
ATGAGTCCGCGTACTAATCCAACACTGACGCGGTCAATTCCCGTTGTCAC
AGGATAACTTACCCTCAAAAGGGTATAGAACTACTGAAAAATAAAAATAA
AATAAAATAAAATGGACCCGAGGGGTCCAAGGTTTGTGCCGAACATCAAT
TCAAGTCTCGTTTGATGGGTTTTTTGCTTTTCGGTGCTCGTTTCCGACGA
TCGCTCTCTAGAGAGCTCTCGCGGTTCGGTGCTCTCGCGGTTCGGTTCGT
GCCGAAAAATAATCCAAGTCTCGTTTGATGGAATTTTTGCTCTTCGGGGC
TCGTTTCCGATTATCGCTCTCTAGCACTACATGTAGAGAGCTCCCGCGGT
TCGGTTTGCCAGTTTCGTTTGATGTGTGTTTTGCTTGGTCCATTCATTCA
GGTGCCCCTGCCCCATCGGTGGTAAGCCTCCTCTCTGCGGTTTCTGTTGG
GATTTGTCAGAAGATAAATTGGTGTTGATATTCTCGCGATCCCCTGCCCC
CCCCCCCCCCCCCGTGTTTTTTTTGGCACCCCCCGCGGGGGCGGGCCCCT
TTTTGGGCACCCCCCCCCCCCCCCCCCGGGGGTGGNNNNNNNNNNTCTGT
TGGGATTTGTCAGAAGATAAATTGGTGTTGATATTCTCGCGATCCCCTGC
CCCCCCCCCCCCGTGTTGTATCTTGGGACACACCAGGCGGGGCTAGGCCT
TTCTTGGGCAACCCGCTCTCTCCGCACGTGGTGATGCTGACCTTCTACAA
CGCGCTCGACACACTGTGCTGCTTGAAGCCGACCCGGGACGGCATGCAGG
TA back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5393:605..4306-
>mRNA_L-elsbetiae_contig5393.13605.1 ID=mRNA_L-elsbetiae_contig5393.13605.1|Name=mRNA_L-elsbetiae_contig5393.13605.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig5393:605..4306- (Laminarionema elsbetiae ELsaHSoW15) GTTGTTCGATGCGGGCCCGGTGATGCCTTTCCCGCCGCCCTCCAGATCGA CCCTCCCGACGAGGAATCGCCGGCGGCGGCGGCAACCGACGCGCCGGGCG CGGGGAAAAGAGCCAGTGTGAAGGAGAGGGACCTGAAGTGGGCCGCCGCG CCTCCGATGGAGGTGGCGCTTTTGAAGCAAACGGAGAGAGACGTTGTTCG ATGCGGGCCCGGTGATGCCTTTCCCGCCGCCCTCCAGATCGACCCTCCCG ACGAGGAATCGCCGGCGGCGGCGGCAACCGACGCGCCGGGCGCGGGGAAA AGAGCCAGTGTGAAGGAGAGGGACCTGAAGTGGGCCGCCGCGCCTCCGAT GGAGGTGGCGCTTTTGAAGCAAACGGAGAGAGACGTGAGCCTTCCGCTGA AGCCGCCGCCGCAGCCGGACCCTGCCGATAACTGGCCCTACCTCAGGCTA ATGCTTCGGCCGCTCGACTCCAGCCAGCTCAAGGATACGCTCTCTACTCC CGAAGGTGAGCCTTCCGCTGAAGCCGCCGCCGCAGCCGGACCCTGCCGAT AACTGGCCCTACCTCAGGCTAATGCTTCGGCCGCTCGACTCCAGCCAGCT CAAGGATACGCTCTCTACTCCCGAAGGCGGGGCTAGGCCTTTCTTGGGCA ACCCGCTCTCTCCGCACGTGGTGATGCTGACCTTCTACAACGCGCTCGAC ACACTGTGCTGCTTGAAGCCGACCCGGGACGGCATGCAGGTAGCGGGGCT AGGCCTTTCTTGGGCAACCCGCTCTCTCCGCACGTGGTGATGCTGACCTT CTACAACGCGCTCGACACACTGTGCTGCTTGAAGCCGACCCGGGACGGCA TGCAGGTA back to top