prot_L-elsbetiae_contig5393.13605.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5393.13605.1
Unique Nameprot_L-elsbetiae_contig5393.13605.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length143
Homology
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BLAST of mRNA_L-elsbetiae_contig5393.13605.1 vs. uniprot
Match: D7FXT3_ECTSI (TFIID and SAGA subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT3_ECTSI)

HSP 1 Score: 218 bits (554), Expect = 1.560e-64
Identity = 115/161 (71.43%), Postives = 123/161 (76.40%), Query Frame = 0 
Query:    1 VVRCGPGDAFPAALQIDPPDE-------------------ESPAAAATDAPGAGKRASVKERDLKWAAAPPMEVALLKQTERDVSLPLKPPPQPDPADNWPYLRLMLRPLDSSQLKDTLSTPEGGARPFLGNPLSPHVVMLTFYNALDTLCCLKPTRDGMQ 142
            VVRCGP DAFPAAL+    D                    + PAA AT A G G    V+E DLKWAAAPPMEVAL+KQTERDVSLPLKPPPQPDP +NWPYLRL LRPLDS+QLKDTLSTPEGGARPFL NPLSPHVVM+TFYNA+DTLCCLKPTRDGMQ
Sbjct:  244 VVRCGPDDAFPAALRPRSSDXXXXXXXXXXXXXXXXXKATKEPAAPATTA-GRGGGRGVQEEDLKWAAAPPMEVALMKQTERDVSLPLKPPPQPDPPENWPYLRLALRPLDSAQLKDTLSTPEGGARPFLANPLSPHVVMVTFYNAVDTLCCLKPTRDGMQ 403
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BLAST of mRNA_L-elsbetiae_contig5393.13605.1 vs. uniprot
Match: A0A6H5JH71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH71_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 7.360e-47
Identity = 115/283 (40.64%), Postives = 125/283 (44.17%), Query Frame = 0 
Query:    1 VVRCGPGDAFPAALQIDPPDEE-----------SPAAAATDAPGAGKRAS-------VKERDLKWAAAPPMEVALLKQTERD--------------------------------------------------------------------------------------------------------------------------VSLPLKPPPQPDPADNWPYLRLMLRPLDSSQLKDTLSTPEGGARPFLGNPLSPHVVMLTFYNALDTLCCLKPTRDGMQV 143
            VVRCGP DAFPAAL+    DE+           SP + AT  P A            V+E DLKWAAAPPMEVALLKQTERD                                                                                                                          VSLPLKPPPQPDP++NWPYLRL LRPLDS+QLKDTLSTPEGGARPFL NPLSPHVVM+TF+NA+DTLCCLKPTRDGMQV
Sbjct:   42 VVRCGPDDAFPAALRPRSSDEDKSKEESEAARDSPPSKATKEPVAXXXXXXXXXXXXVEEEDLKWAAAPPMEVALLKQTERDAAASGLYYPLSLEPKATKTDPPTTTAAVPSRPTATSPGTNGTANSPPAVATGLTVNTTGXXXXXXXXXXXXXXXXXXXXXXSAIPTXXXXXXXXXXRASRVAAAAEVTEATARRHGGLRQKQVSLPLKPPPQPDPSENWPYLRLALRPLDSAQLKDTLSTPEGGARPFLANPLSPHVVMVTFFNAVDTLCCLKPTRDGMQV 324
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5393.13605.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXT3_ECTSI1.560e-6471.43TFIID and SAGA subunit n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JH71_9PHAE7.360e-4740.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5393contigL-elsbetiae_contig5393:605..4306 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5393.13605.1mRNA_L-elsbetiae_contig5393.13605.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5393 605..4306 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5393.13605.1 ID=prot_L-elsbetiae_contig5393.13605.1|Name=mRNA_L-elsbetiae_contig5393.13605.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
VVRCGPGDAFPAALQIDPPDEESPAAAATDAPGAGKRASVKERDLKWAAA
PPMEVALLKQTERDVSLPLKPPPQPDPADNWPYLRLMLRPLDSSQLKDTL
STPEGGARPFLGNPLSPHVVMLTFYNALDTLCCLKPTRDGMQV
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