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Homology
BLAST of mRNA_L-elsbetiae_contig524.13350.1 vs. uniprot
Match: D8LJV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJV6_ECTSI) HSP 1 Score: 343 bits (881), Expect = 3.160e-109 Identity = 198/318 (62.26%), Postives = 229/318 (72.01%), Query Frame = 3
Query: 345 STAGSSRYPGTDRESFARTLNEEELDEVWKGLGEGVSQRGCGSEVAC--DLAADGANVPASPSGTAVSGAFPMLTANVLERHDQLADGCGGGXXXXXXXXXXXXXXGGRRVANVMPMPKQIGDRTVEDMENGTRRSSXXXXXXXXXXXXXXXXXXXXLLGAIVSTVILGLWVAHLVFNVLLLWPIIVDHYVWAVCFVPGVLGILLSFNSFRKSHRHCKPVADDEAEADAGPCRRRRSGPHPCALPCHTILLLSVVACLGMHASDMLFCKNDMILVFDEATLEPLCDES-LTLPIVLDGVLLLVASLKASSLCWAWVLN 1289
++ GS R+P DRESFARTLN EELDEVWKGLGEGVSQRGCGSEV DLA P SP+GT VSGAFP LTANVLERHDQLAD XXXXXXXXXXXX NV+P+PK++ +R+ EDMENGT LLGAIVS +L LWV HLVFNVLLLW ++ D VWA+CF+PGVLGILLS NS RKSHR CKP+ D+A+ R RS PH CALP HT+LLL+VV CLG+HAS +LFC+ DM+LVF+E TL+PLCD+S L LP++LD ++L VASLKASSLCWAWVLN
Sbjct: 76 TSGGSGRFPSHDRESFARTLNNEELDEVWKGLGEGVSQRGCGSEVGVGFDLAD---TTPPSPNGTGVSGAFPKLTANVLERHDQLAD------DXXXXXXXXXXXXXXXXXXNVVPIPKKLMERSAEDMENGTSSKKSSGNGNGNQPASGVQQQEKTLLGAIVSYGVLVLWVGHLVFNVLLLWRVVADEQVWALCFLPGVLGILLSVNSCRKSHRRCKPLNADDAQTQRRQRGRERSAPHACALPAHTLLLLAVVVCLGLHASALLFCEKDMLLVFEEETLDPLCDDSSLALPLILDAIVLSVASLKASSLCWAWVLN 384
BLAST of mRNA_L-elsbetiae_contig524.13350.1 vs. uniprot
Match: A0A6H5JGU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU1_9PHAE) HSP 1 Score: 348 bits (892), Expect = 1.000e-106 Identity = 201/320 (62.81%), Postives = 230/320 (71.88%), Query Frame = 3
Query: 342 GSTAGSS-RYPGTDRESFARTLNEEELDEVWKGLGEGVSQRGCGSEVAC--DLAADGANVPASPSGTAVSGAFPMLTANVLERHDQLADGCGGGXXXXXXXXXXXXXXGGRRVANVMPMPKQIGDRTVEDMENGTRRSSXXXXXXXXXXXXXXXXXXXXLLGAIVSTVILGLWVAHLVFNVLLLWPIIVDHYVWAVCFVPGVLGILLSFNSFRKSHRHCKPVADDEAEADAGPCRRRRSGPHPCALPCHTILLLSVVACLGMHASDMLFCKNDMILVFDEATLEPLCDES-LTLPIVLDGVLLLVASLKASSLCWAWVLN 1289
GST+G S R+P DRESFARTLN+EELDEVW GLGEGVSQRGCGSEV DLA P SP+GT VSGAFP LTANVLERHDQLAD XXXXXXXXXX ANV+P+PKQ+ +R+ EDMENGT LLGAI S +L LWVAHLVFNVLLLW ++ D VWA+CFVPGVLGILLS N RKSHRHCKP+ D+A+ RS PH C+LP HT+LLL+VV CLG+HAS LFC+ DM+LVF+E TL+PLCD+S LTLP++LDG++L VASLKASSLCWAWVLN
Sbjct: 403 GSTSGGSGRFPSHDRESFARTLNDEELDEVWNGLGEGVSQRGCGSEVGVGVDLAD---TTPPSPNGTGVSGAFPKLTANVLERHDQLAD--------DXXXXXXXXXXXXXXAANVVPIPKQLMERSAEDMENGTSSKKSSGNGSGNQPASGVQQQEKTLLGAIASYGVLVLWVAHLVFNVLLLWRVVADEQVWALCFVPGVLGILLSVNRCRKSHRHCKPLNTDDAQTQQRQQGLGRSAPHACSLPVHTLLLLAVVVCLGLHASAFLFCEKDMLLVFEEETLDPLCDDSSLTLPLILDGIVLSVASLKASSLCWAWVLN 711
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | hypothetical protein |
Ec32 ortholog | Ec-01_009830.1 |
Exons | 3 |
Model size | 1965 |
Cds size | 1167 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816538.789721-UTR-L-elsbetiae_contig524:2697..3370 | 1622816538.789721-UTR-L-elsbetiae_contig524:2697..3370 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig524 2698..3370 - |
1691683632.1771114-UTR-L-elsbetiae_contig524:2697..3370 | 1691683632.1771114-UTR-L-elsbetiae_contig524:2697..3370 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig524 2698..3370 - |
1622816538.8413036-UTR-L-elsbetiae_contig524:5990..6115 | 1622816538.8413036-UTR-L-elsbetiae_contig524:5990..6115 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig524 5991..6115 - |
1691683632.2205982-UTR-L-elsbetiae_contig524:5990..6115 | 1691683632.2205982-UTR-L-elsbetiae_contig524:5990..6115 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig524 5991..6115 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816538.8045983-CDS-L-elsbetiae_contig524:3370..3517 | 1622816538.8045983-CDS-L-elsbetiae_contig524:3370..3517 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig524 3371..3517 - |
1691683632.1884613-CDS-L-elsbetiae_contig524:3370..3517 | 1691683632.1884613-CDS-L-elsbetiae_contig524:3370..3517 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig524 3371..3517 - |
1622816538.8176384-CDS-L-elsbetiae_contig524:3985..4247 | 1622816538.8176384-CDS-L-elsbetiae_contig524:3985..4247 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig524 3986..4247 - |
1691683632.1997666-CDS-L-elsbetiae_contig524:3985..4247 | 1691683632.1997666-CDS-L-elsbetiae_contig524:3985..4247 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig524 3986..4247 - |
1622816538.8275123-CDS-L-elsbetiae_contig524:5232..5990 | 1622816538.8275123-CDS-L-elsbetiae_contig524:5232..5990 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig524 5233..5990 - |
1691683632.211566-CDS-L-elsbetiae_contig524:5232..5990 | 1691683632.211566-CDS-L-elsbetiae_contig524:5232..5990 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig524 5233..5990 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig524.13350.1 >prot_L-elsbetiae_contig524.13350.1 ID=prot_L-elsbetiae_contig524.13350.1|Name=mRNA_L-elsbetiae_contig524.13350.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=389bp
MGVMDVQAAKGEKEDHLPFHDEPRQVVVGEGSPPQPEQAPCWGGGLPPTC GPAAARAAAAAAEAAAQQSRAAGSTAGSSRYPGTDRESFARTLNEEELDE VWKGLGEGVSQRGCGSEVACDLAADGANVPASPSGTAVSGAFPMLTANVL ERHDQLADGCGGGSGSGGGNSPGKGEGGGRRVANVMPMPKQIGDRTVEDM ENGTRRSSKKSKGSSSSRSDQPQQQQTTLLGAIVSTVILGLWVAHLVFNV LLLWPIIVDHYVWAVCFVPGVLGILLSFNSFRKSHRHCKPVADDEAEADA GPCRRRRSGPHPCALPCHTILLLSVVACLGMHASDMLFCKNDMILVFDEA TLEPLCDESLTLPIVLDGVLLLVASLKASSLCWAWVLN* back to topmRNA from alignment at L-elsbetiae_contig524:2698..6115- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig524.13350.1 ID=mRNA_L-elsbetiae_contig524.13350.1|Name=mRNA_L-elsbetiae_contig524.13350.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3418bp|location=Sequence derived from alignment at L-elsbetiae_contig524:2698..6115- (Laminarionema elsbetiae ELsaHSoW15) GTCCCCGGCCCGCCCCGGCCAGCACTTTCGGAGGATCGCACAACTTCGAT
ATCACGACAACATCTCCACCGGCGGCAGCGGAGGTTGCTGCTCCCAAGCT
GCGGCGACACAACTCCGCGCCGGACATGGGCGTAATGGACGTGCAGGCCG
CGAAGGGCGAGAAGGAGGACCACCTCCCTTTCCACGACGAGCCTCGGCAG
GTGGTGGTGGGAGAAGGGTCGCCGCCCCAGCCCGAGCAGGCCCCCTGCTG
GGGCGGCGGGCTACCGCCGACCTGCGGGCCGGCGGCGGCGAGAGCGGCGG
CCGCAGCGGCGGAGGCCGCGGCGCAGCAATCGCGAGCGGCAGGGTCGACG
GCCGGCAGCAGCAGATACCCCGGCACAGACAGGGAGAGCTTCGCGCGCAC
CCTGAACGAGGAGGAGCTCGACGAGGTCTGGAAAGGGCTCGGGGAAGGGG
TCAGCCAGCGGGGCTGCGGCTCCGAGGTCGCCTGCGACCTCGCCGCGGAC
GGCGCCAACGTGCCCGCGAGCCCGAGCGGGACCGCTGTCAGCGGCGCCTT
CCCCATGCTCACGGCGAACGTGCTCGAGCGGCACGATCAGCTGGCGGACG
GGTGCGGCGGCGGCAGCGGCAGCGGCGGCGGCAACTCGCCGGGCAAGGGA
GAGGGGGGGGGGCGCCGCGTCGCGAACGTGATGCCCATGCCGAAGCAGAT
CGGCGACAGGACGGTGGAGGACATGGAGAACGGGACGAGGAGGTCCTCGA
AGAAGAGCAAGGGCAGCAGCAGCAGCCGGAGCGACCAACCGCAGCAGCAG
CAGACCACGCTCCTGGGCGCGATCGTGTCGACCGTGATACTGGGCCTGTG
GGTGGCACATCTCGTGTTCAACGTCTTGCTACTGTGAGATTTTTTAACTA
TTTGTATGTATTTACCTATGCTTTCGTGTTTTCGCATTGCATTGCATTGT
AGTCTTATGTACATTTTTTGTAGCATGTTCGATGCAGGTTTCCCCAGAGA
TGACTCCCCCCCCCCTGAAACGACTTCTTCACAAGTTCGACGTACATGTT
TAAGAAGGTGTGTTGCTTTATTTCGTACTCGGAGTGATGCGGACCTCTGT
TTTTGAGGATTTTCTGTTCGCGTCACGTTCTGTAAGCGCGCGCTTGCTTG
TCTCCCCCCCTGAAACGACTTCTTCAAGTTCGACGTACATGTATAAGAAG
GTGTGTTGCTTTATTTCGTACTCGGCGTGATGCGGACCTCTGTTTTTGAG
GGTTTTCTGTTCGCGTCACGTTCTGTAAGCGCGCGCTTGCTTGCCTGCCC
CACCTTCTGTGCCCTCCCTCCCTCCCTGGTTTAATGGTTTCGAGCCTTTT
GATGCATCTTCGCTGATTTTGAATGGCTTGCCGAAAAACTGGTTGTATAT
ATGTATGGATGTACCATATGTATGTAGAAAGCGATGATGGAACCCAGCAA
TTTAAAAACCTCTTCCGACCTCGCTTCTTGGGCATGAATTCCATGGCCTC
AACAAATAATGTTGCCTCAGACACCTATGTACATATATACCTAATCCAGT
TGTACATACGTATTTTTTGTTCAATTTCTTTTTTGTCACAGGTCGGATGG
ACGAGGGCGATGGACACTGCTGACATTTTGAGGGACACTTAAAAAACGGA
CGTAGACTGCTGACATTTGTATACATCAATTAAAAAACAAAAACATGAGG
TTGGCACAGAGGGTATTTAGGTTAAATATCGTTTGGCTAATTTTCTGATT
TTGCCCCGTCCATCCCTCCTCCCCCCCGCGTCCCACCCATCCACCCCACC
CCCGTCCGGGACTGCTCTTCCGATTTTGTTTTTATTACCGTGTTCCCTGC
TATGCTACACACACACAGGTGGCCCATCATCGTGGATCACTACGTCTGGG
CCGTGTGCTTCGTCCCGGGCGTGCTGGGCATCCTGCTGTCGTTCAACAGC
TTCCGGAAGAGCCACCGCCACTGCAAGCCCGTAGCCGACGACGAGGCCGA
GGCCGACGCGGGGCCGTGCCGCCGCCGCCGGTCGGGGCCCCACCCTTGCG
CCCTGCCGTGCCACACGATCCTGCTCCTGTCCGTCGTGGCCTGCCTCGGG
ATGCACGCGTCCGACATGCTCTTCTGCAAGGTCGGTCGTCAGTCGTCTTG
AGATATGTTGTTGGGGGGGGGGGGGGGGGTGGGGGGTGGGGGGGAGGGAT
TTTTTGTTTGTTTTTGCTGGTGTGGTGTCTGTCGCCCTGCCACTTGTTTT
GCCATTTTATTTGTTGTTTGTTGACGGTGGTGTGTGTCACTGGTTGGTAT
CGGGACATACGTTAGACAGAGGACCGCGTCGGATCAAAACGTTCACGCGT
GCACTCGATACTAAAAAATAAGATCACTTCCCATACAAATATAGCTACGC
TCGTGGGTTCTCCGTTCTAAATATGTAGAAGTAATTGGTGTGTACGTACG
TCATTGATTTTGGCAGCGGCACCGGCGCATTTTATTTATAACCCATTTAT
CCCCCGCACGTGGTCTGTTTTTTTGTGGGCCTGACTGACCCCCCCCCCCC
CCCCCCCGCCTCCCTGTCCGATGTTTCTCCTGTTCCTTGCGTATTCAGAA
CGACATGATACTGGTTTTCGATGAAGCGACGCTGGAACCTCTTTGCGATG
AGTCGCTCACCCTCCCCATAGTCTTGGACGGCGTTCTGCTTTTGGTGGCC
AGCCTCAAGGCCAGCAGCTTGTGCTGGGCGTGGGTACTAAACTAAGGAGT
TGATTTCACTTACGGGCCTTCGAGCAGTTTTTCTTTGCCGCCCGCCTATT
GTAGCGGTTTTTCTTTGCCGACCTATATTTATAATATTGTAGCGGGCTTC
TAGTTAGCCCAATCTCATTTTTTTCTGTTTTTGTCGACTCGAGTTGTGGC
GCAAGGAAGTGCCGAGCTCACTGCTGTTTATTGAAGTGAAGGAAGGGATG
TGTTTGCGCGGGTGGGGGGCTTTTCAATCAAGCGCCGACTGCTGTCGCTG
TTTAGTTGTCAGGTTGCTGTCCCTGTCCCTCTCCTTTCTGTCCAGTGTGG
TGGCGGTGCGCTTATCGTGTGTATTGACTTGCGTATGTGATGGCGGTGCG
CTTATCATACCTGCCGTGTTACATAAACCAGAGGATGAGGAGAAGTAGGG
TTCTAGTGTTGCACACACACACACACACAGCCTTCCAGAGGCAGCAAGAA
TCAATCAGGCCGCCTTGTGAGTTCTTCGTGTTTGGTCTTTGTCACTGTTT
TTTTTAATTGCTCTTATCTGTTTTTTGTACGTCTTGCCCACGTTATGGTT
ATGAACTGTTACTAGAGGTTGGTTTGCTGCCGGTTTTCCCTCTGTCTACT
GCAGGGGGGGTGTGTCCGCGGCTGTTAAGTTGAAATTATGTTTTTGTGTT
GAGTGAGGCAGTGGAGGC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig524:2698..6115- >mRNA_L-elsbetiae_contig524.13350.1 ID=mRNA_L-elsbetiae_contig524.13350.1|Name=mRNA_L-elsbetiae_contig524.13350.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2334bp|location=Sequence derived from alignment at L-elsbetiae_contig524:2698..6115- (Laminarionema elsbetiae ELsaHSoW15) ATGGGCGTAATGGACGTGCAGGCCGCGAAGGGCGAGAAGGAGGACCACCT CCCTTTCCACGACGAGCCTCGGCAGGTGGTGGTGGGAGAAGGGTCGCCGC CCCAGCCCGAGCAGGCCCCCTGCTGGGGCGGCGGGCTACCGCCGACCTGC GGGCCGGCGGCGGCGAGAGCGGCGGCCGCAGCGGCGGAGGCCGCGGCGCA GCAATCGCGAGCGGCAGGGTCGACGGCCGGCAGCAGCAGATACCCCGGCA CAGACAGGGAGAGCTTCGCGCGCACCCTGAACGAGGAGGAGCTCGACGAG GTCTGGAAAGGGCTCGGGGAAGGGGTCAGCCAGCGGGGCTGCGGCTCCGA GGTCGCCTGCGACCTCGCCGCGGACGGCGCCAACGTGCCCGCGAGCCCGA GCGGGACCGCTGTCAGCGGCGCCTTCCCCATGCTCACGGCGAACGTGCTC GAGCGGCACGATCAGCTGGCGGACGGGTGCGGCGGCGGCAGCGGCAGCGG CGGCGGCAACTCGCCGGGCAAGGGAGAGGGGGGGGGGCGCCGCGTCGCGA ACGTGATGCCCATGCCGAAGCAGATCGGCGACAGGACGGTGGAGGACATG GAGAACGGGACGAGGAGGTCCTCGAAGAAGAGCAAGGGCAGCAGCAGCAG CCGGAGCGACCAACCGCAGCAGCAGCAGACCACGCTCCTGGGCGCGATCG TGTCGACCGTGATACTGGGCCTGTGGGTGGCACATCTCGTGTTCAACGTC TTGCTACTATGGGCGTAATGGACGTGCAGGCCGCGAAGGGCGAGAAGGAG GACCACCTCCCTTTCCACGACGAGCCTCGGCAGGTGGTGGTGGGAGAAGG GTCGCCGCCCCAGCCCGAGCAGGCCCCCTGCTGGGGCGGCGGGCTACCGC CGACCTGCGGGCCGGCGGCGGCGAGAGCGGCGGCCGCAGCGGCGGAGGCC GCGGCGCAGCAATCGCGAGCGGCAGGGTCGACGGCCGGCAGCAGCAGATA CCCCGGCACAGACAGGGAGAGCTTCGCGCGCACCCTGAACGAGGAGGAGC TCGACGAGGTCTGGAAAGGGCTCGGGGAAGGGGTCAGCCAGCGGGGCTGC GGCTCCGAGGTCGCCTGCGACCTCGCCGCGGACGGCGCCAACGTGCCCGC GAGCCCGAGCGGGACCGCTGTCAGCGGCGCCTTCCCCATGCTCACGGCGA ACGTGCTCGAGCGGCACGATCAGCTGGCGGACGGGTGCGGCGGCGGCAGC GGCAGCGGCGGCGGCAACTCGCCGGGCAAGGGAGAGGGGGGGGGGCGCCG CGTCGCGAACGTGATGCCCATGCCGAAGCAGATCGGCGACAGGACGGTGG AGGACATGGAGAACGGGACGAGGAGGTCCTCGAAGAAGAGCAAGGGCAGC AGCAGCAGCCGGAGCGACCAACCGCAGCAGCAGCAGACCACGCTCCTGGG CGCGATCGTGTCGACCGTGATACTGGGCCTGTGGGTGGCACATCTCGTGT TCAACGTCTTGCTACTGTGGCCCATCATCGTGGATCACTACGTCTGGGCC GTGTGCTTCGTCCCGGGCGTGCTGGGCATCCTGCTGTCGTTCAACAGCTT CCGGAAGAGCCACCGCCACTGCAAGCCCGTAGCCGACGACGAGGCCGAGG CCGACGCGGGGCCGTGCCGCCGCCGCCGGTCGGGGCCCCACCCTTGCGCC CTGCCGTGCCACACGATCCTGCTCCTGTCCGTCGTGGCCTGCCTCGGGAT GCACGCGTCCGACATGCTCTTCTGCAAGGTGGCCCATCATCGTGGATCAC TACGTCTGGGCCGTGTGCTTCGTCCCGGGCGTGCTGGGCATCCTGCTGTC GTTCAACAGCTTCCGGAAGAGCCACCGCCACTGCAAGCCCGTAGCCGACG ACGAGGCCGAGGCCGACGCGGGGCCGTGCCGCCGCCGCCGGTCGGGGCCC CACCCTTGCGCCCTGCCGTGCCACACGATCCTGCTCCTGTCCGTCGTGGC CTGCCTCGGGATGCACGCGTCCGACATGCTCTTCTGCAAGAACGACATGA TACTGGTTTTCGATGAAGCGACGCTGGAACCTCTTTGCGATGAGTCGCTC ACCCTCCCCATAGTCTTGGACGGCGTTCTGCTTTTGGTGGCCAGCCTCAA GGCCAGCAGCTTGTGCTGGGCGTGGGTACTAAACTAAAACGACATGATAC TGGTTTTCGATGAAGCGACGCTGGAACCTCTTTGCGATGAGTCGCTCACC CTCCCCATAGTCTTGGACGGCGTTCTGCTTTTGGTGGCCAGCCTCAAGGC CAGCAGCTTGTGCTGGGCGTGGGTACTAAACTAA back to top
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