prot_L-elsbetiae_contig524.13350.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig524.13350.1
Unique Name	prot_L-elsbetiae_contig524.13350.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	389

Homology

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BLAST of mRNA_L-elsbetiae_contig524.13350.1 vs. uniprot
Match: D8LJV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJV6_ECTSI)

HSP 1 Score: 342 bits (878), Expect = 2.070e-112
Identity = 198/318 (62.26%), Postives = 229/318 (72.01%), Query Frame = 0

Query:   74 STAGSSRYPGTDRESFARTLNEEELDEVWKGLGEGVSQRGCGSEVAC--DLAADGANVPASPSGTAVSGAFPMLTANVLERHDQLADGCGGGXXXXXXXXXXXXXXGGRRVANVMPMPKQIGDRTVEDMENGTRRSSXXXXXXXXXXXXXXXXXXXXLLGAIVSTVILGLWVAHLVFNVLLLWPIIVDHYVWAVCFVPGVLGILLSFNSFRKSHRHCKPVADDEAEADAGPCRRRRSGPHPCALPCHTILLLSVVACLGMHASDMLFCKNDMILVFDEATLEPLCDES-LTLPIVLDGVLLLVASLKASSLCWAWVLN 388
            ++ GS R+P  DRESFARTLN EELDEVWKGLGEGVSQRGCGSEV    DLA      P SP+GT VSGAFP LTANVLERHDQLAD       XXXXXXXXXXXX      NV+P+PK++ +R+ EDMENGT                        LLGAIVS  +L LWV HLVFNVLLLW ++ D  VWA+CF+PGVLGILLS NS RKSHR CKP+  D+A+       R RS PH CALP HT+LLL+VV CLG+HAS +LFC+ DM+LVF+E TL+PLCD+S L LP++LD ++L VASLKASSLCWAWVLN
Sbjct:   76 TSGGSGRFPSHDRESFARTLNNEELDEVWKGLGEGVSQRGCGSEVGVGFDLAD---TTPPSPNGTGVSGAFPKLTANVLERHDQLAD------DXXXXXXXXXXXXXXXXXXNVVPIPKKLMERSAEDMENGTSSKKSSGNGNGNQPASGVQQQEKTLLGAIVSYGVLVLWVGHLVFNVLLLWRVVADEQVWALCFLPGVLGILLSVNSCRKSHRRCKPLNADDAQTQRRQRGRERSAPHACALPAHTLLLLAVVVCLGLHASALLFCEKDMLLVFEEETLDPLCDDSSLALPLILDAIVLSVASLKASSLCWAWVLN 384

[Close]

BLAST of mRNA_L-elsbetiae_contig524.13350.1 vs. uniprot
Match: A0A6H5JGU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU1_9PHAE)

HSP 1 Score: 347 bits (889), Expect = 6.210e-110
Identity = 201/320 (62.81%), Postives = 230/320 (71.88%), Query Frame = 0

Query:   73 GSTAGSS-RYPGTDRESFARTLNEEELDEVWKGLGEGVSQRGCGSEVAC--DLAADGANVPASPSGTAVSGAFPMLTANVLERHDQLADGCGGGXXXXXXXXXXXXXXGGRRVANVMPMPKQIGDRTVEDMENGTRRSSXXXXXXXXXXXXXXXXXXXXLLGAIVSTVILGLWVAHLVFNVLLLWPIIVDHYVWAVCFVPGVLGILLSFNSFRKSHRHCKPVADDEAEADAGPCRRRRSGPHPCALPCHTILLLSVVACLGMHASDMLFCKNDMILVFDEATLEPLCDES-LTLPIVLDGVLLLVASLKASSLCWAWVLN 388
            GST+G S R+P  DRESFARTLN+EELDEVW GLGEGVSQRGCGSEV    DLA      P SP+GT VSGAFP LTANVLERHDQLAD         XXXXXXXXXX     ANV+P+PKQ+ +R+ EDMENGT                        LLGAI S  +L LWVAHLVFNVLLLW ++ D  VWA+CFVPGVLGILLS N  RKSHRHCKP+  D+A+         RS PH C+LP HT+LLL+VV CLG+HAS  LFC+ DM+LVF+E TL+PLCD+S LTLP++LDG++L VASLKASSLCWAWVLN
Sbjct:  403 GSTSGGSGRFPSHDRESFARTLNDEELDEVWNGLGEGVSQRGCGSEVGVGVDLAD---TTPPSPNGTGVSGAFPKLTANVLERHDQLAD--------DXXXXXXXXXXXXXXAANVVPIPKQLMERSAEDMENGTSSKKSSGNGSGNQPASGVQQQEKTLLGAIASYGVLVLWVAHLVFNVLLLWRVVADEQVWALCFVPGVLGILLSVNRCRKSHRHCKPLNTDDAQTQQRQQGLGRSAPHACSLPVHTLLLLAVVVCLGLHASAFLFCEKDMLLVFEEETLDPLCDDSSLTLPLILDGIVLSVASLKASSLCWAWVLN 711

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig524.13350.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig524.13350.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LJV6_ECTSI	2.070e-112	62.26	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JGU1_9PHAE	6.210e-110	62.81	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 313..333
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 255..259
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..227
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 282..312
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 388..388
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 334..363
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 228..254
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 260..281
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 364..387
None	No IPR available	TMHMM	TMhelix		coord: 229..251
None	No IPR available	TMHMM	TMhelix		coord: 256..278
None	No IPR available	TMHMM	TMhelix		coord: 364..386
None	No IPR available	TMHMM	TMhelix		coord: 314..333

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig524	contig	L-elsbetiae_contig524:3371..5990 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig524.13350.1	mRNA_L-elsbetiae_contig524.13350.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig524 2698..6115 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig524.13350.1 ID=prot_L-elsbetiae_contig524.13350.1|Name=mRNA_L-elsbetiae_contig524.13350.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=389bp
MGVMDVQAAKGEKEDHLPFHDEPRQVVVGEGSPPQPEQAPCWGGGLPPTC
GPAAARAAAAAAEAAAQQSRAAGSTAGSSRYPGTDRESFARTLNEEELDE
VWKGLGEGVSQRGCGSEVACDLAADGANVPASPSGTAVSGAFPMLTANVL
ERHDQLADGCGGGSGSGGGNSPGKGEGGGRRVANVMPMPKQIGDRTVEDM
ENGTRRSSKKSKGSSSSRSDQPQQQQTTLLGAIVSTVILGLWVAHLVFNV
LLLWPIIVDHYVWAVCFVPGVLGILLSFNSFRKSHRHCKPVADDEAEADA
GPCRRRRSGPHPCALPCHTILLLSVVACLGMHASDMLFCKNDMILVFDEA
TLEPLCDESLTLPIVLDGVLLLVASLKASSLCWAWVLN*