Homology
BLAST of mRNA_L-elsbetiae_contig5213.13317.1 vs. uniprot
Match:
D7FZW0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW0_ECTSI)
HSP 1 Score: 79.7 bits (195), Expect = 6.690e-15
Identity = 35/43 (81.40%), Postives = 41/43 (95.35%), Query Frame = 3
Query: 108 EEELEYSSLSSVRIVRGPSLAELEKRKKALHKWNSLGPGGGVF 236
EEELEYSSL++VR+VRGPS+ ELEKRK+ALHKWNSLGPGGG+
Sbjct: 370 EEELEYSSLANVRVVRGPSMGELEKRKQALHKWNSLGPGGGIL 412
BLAST of mRNA_L-elsbetiae_contig5213.13317.1 vs. uniprot
Match:
A0A6H5L4H0_9PHAE (Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H0_9PHAE)
HSP 1 Score: 75.9 bits (185), Expect = 1.610e-13
Identity = 34/46 (73.91%), Postives = 41/46 (89.13%), Query Frame = 3
Query: 108 EEELEYSSLSSVRIVRGPSLAELEKRKKALHKWNSLGPGGGVFAES 245
EEELEYSSL++VR+VRGPS+ EL+KRK+AL KWNSLGPGGG+ S
Sbjct: 831 EEELEYSSLANVRVVRGPSMGELKKRKQALQKWNSLGPGGGILGGS 876
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5213.13317.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 6.69e-15 / Id = 81.40 Expect = 1.61e-13 / Id = 73.91 Sequence D7FZW0_ECTSI A0A6H5L4H0_9PHAE
Match Name E-value Identity Description
D7FZW0_ECTSI 6.690e-15 81.40 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4H0_9PHAE 1.610e-13 73.91 Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=8... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Exons 1
Model size 379
Cds size 378
Stop 0
Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816535.5176263-CDS-L-elsbetiae_contig5213:2717..3095 1622816535.5176263-CDS-L-elsbetiae_contig5213:2717..3095 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5213 2718..3095 +
1691683630.0211964-CDS-L-elsbetiae_contig5213:2717..3095 1691683630.0211964-CDS-L-elsbetiae_contig5213:2717..3095 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5213 2718..3095 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5213.13317.1
>prot_L-elsbetiae_contig5213.13317.1 ID=prot_L-elsbetiae_contig5213.13317.1|Name=mRNA_L-elsbetiae_contig5213.13317.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
RRRAKPATRPRVPRKRRARPGGARGPTAAPAATAARRKSSSTALSRAFAS CGAPRWPSWRSGRRPSTSGTPWGPVVASLRSRQEPGMRRRIPPPPPPPPP PRPPPPPLRHRRPQRPPPKRERRQGE back to top mRNA from alignment at L-elsbetiae_contig5213:2718..3096+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5213.13317.1 ID=mRNA_L-elsbetiae_contig5213.13317.1|Name=mRNA_L-elsbetiae_contig5213.13317.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=379bp|location=Sequence derived from alignment at L-elsbetiae_contig5213:2718..3096+ (Laminarionema elsbetiae ELsaHSoW15)CGGCGTCGAGCGAAGCCGGCAACGCGGCCGAGGGTCCCGAGAAAGAGAAG
GGCGAGGCCGGGGGGGGCGAGGGGGCCCACCGCCGCGCCGGCCGCGACGG
CGGCGAGGAGGAAGAGCTCGAGTACAGCTCTCTCTCGAGCGTTCGCATCG
TGCGGGGCCCCTCGCTGGCCGAGCTGGAGAAGCGGAAGAAGGCCCTCCAC
AAGTGGAACTCCCTGGGGCCCGGTGGTGGCGTCTTTGCGGAGTCGGCAGG
AGCCGGGGATGCGAAGAAGAATTCCACCGCCGCCGCCGCCGCCGCCGCCG
CCACGGCCGCCCCCGCCTCCTCTCCGGCATCGCCGACCACAACGACCCCC
TCCAAAAAGGGAACGGCGCCAGGGGGAG C back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5213:2718..3096+
>mRNA_L-elsbetiae_contig5213.13317.1 ID=mRNA_L-elsbetiae_contig5213.13317.1|Name=mRNA_L-elsbetiae_contig5213.13317.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig5213:2718..3096+ (Laminarionema elsbetiae ELsaHSoW15) CGGCGTCGAGCGAAGCCGGCAACGCGGCCGAGGGTCCCGAGAAAGAGAAG GGCGAGGCCGGGGGGGGCGAGGGGGCCCACCGCCGCGCCGGCCGCGACGG CGGCGAGGAGGAAGAGCTCGAGTACAGCTCTCTCTCGAGCGTTCGCATCG TGCGGGGCCCCTCGCTGGCCGAGCTGGAGAAGCGGAAGAAGGCCCTCCAC AAGTGGAACTCCCTGGGGCCCGGTGGTGGCGTCTTTGCGGAGTCGGCAGG AGCCGGGGATGCGAAGAAGAATTCCACCGCCGCCGCCGCCGCCGCCGCCG CCACGGCCGCCCCCGCCTCCTCTCCGGCATCGCCGACCACAACGACCCCC TCCAAAAAGGGAACGGCGCCAGGGGGAGCGGCGTCGAGCGAAGCCGGCAA CGCGGCCGAGGGTCCCGAGAAAGAGAAGGGCGAGGCCGGGGGGGGCGAGG GGGCCCACCGCCGCGCCGGCCGCGACGGCGGCGAGGAGGAAGAGCTCGAG TACAGCTCTCTCTCGAGCGTTCGCATCGTGCGGGGCCCCTCGCTGGCCGA GCTGGAGAAGCGGAAGAAGGCCCTCCACAAGTGGAACTCCCTGGGGCCCG GTGGTGGCGTCTTTGCGGAGTCGGCAGGAGCCGGGGATGCGAAGAAGAAT TCCACCGCCGCCGCCGCCGCCGCCGCCGCCACGGCCGCCCCCGCCTCCTC TCCGGCATCGCCGACCACAACGACCCCCTCCAAAAAGGGAACGGCGCCAG GGGGAG back to top