mRNA_L-elsbetiae_contig5213.13317.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5213.13317.1
Unique NamemRNA_L-elsbetiae_contig5213.13317.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5213.13317.1 vs. uniprot
Match: D7FZW0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW0_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 6.690e-15
Identity = 35/43 (81.40%), Postives = 41/43 (95.35%), Query Frame = 3 
Query:  108 EEELEYSSLSSVRIVRGPSLAELEKRKKALHKWNSLGPGGGVF 236
            EEELEYSSL++VR+VRGPS+ ELEKRK+ALHKWNSLGPGGG+ 
Sbjct:  370 EEELEYSSLANVRVVRGPSMGELEKRKQALHKWNSLGPGGGIL 412
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BLAST of mRNA_L-elsbetiae_contig5213.13317.1 vs. uniprot
Match: A0A6H5L4H0_9PHAE (Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H0_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.610e-13
Identity = 34/46 (73.91%), Postives = 41/46 (89.13%), Query Frame = 3 
Query:  108 EEELEYSSLSSVRIVRGPSLAELEKRKKALHKWNSLGPGGGVFAES 245
            EEELEYSSL++VR+VRGPS+ EL+KRK+AL KWNSLGPGGG+   S
Sbjct:  831 EEELEYSSLANVRVVRGPSMGELKKRKQALQKWNSLGPGGGILGGS 876
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5213.13317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZW0_ECTSI6.690e-1581.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4H0_9PHAE1.610e-1373.91Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=8... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5213contigL-elsbetiae_contig5213:2718..3096 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size379
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816535.5176263-CDS-L-elsbetiae_contig5213:2717..30951622816535.5176263-CDS-L-elsbetiae_contig5213:2717..3095Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5213 2718..3095 +
1691683630.0211964-CDS-L-elsbetiae_contig5213:2717..30951691683630.0211964-CDS-L-elsbetiae_contig5213:2717..3095Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5213 2718..3095 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5213.13317.1prot_L-elsbetiae_contig5213.13317.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5213 2718..3095 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5213.13317.1

>prot_L-elsbetiae_contig5213.13317.1 ID=prot_L-elsbetiae_contig5213.13317.1|Name=mRNA_L-elsbetiae_contig5213.13317.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
RRRAKPATRPRVPRKRRARPGGARGPTAAPAATAARRKSSSTALSRAFAS
CGAPRWPSWRSGRRPSTSGTPWGPVVASLRSRQEPGMRRRIPPPPPPPPP
PRPPPPPLRHRRPQRPPPKRERRQGE
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mRNA from alignment at L-elsbetiae_contig5213:2718..3096+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5213.13317.1 ID=mRNA_L-elsbetiae_contig5213.13317.1|Name=mRNA_L-elsbetiae_contig5213.13317.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=379bp|location=Sequence derived from alignment at L-elsbetiae_contig5213:2718..3096+ (Laminarionema elsbetiae ELsaHSoW15)
CGGCGTCGAGCGAAGCCGGCAACGCGGCCGAGGGTCCCGAGAAAGAGAAG
GGCGAGGCCGGGGGGGGCGAGGGGGCCCACCGCCGCGCCGGCCGCGACGG
CGGCGAGGAGGAAGAGCTCGAGTACAGCTCTCTCTCGAGCGTTCGCATCG
TGCGGGGCCCCTCGCTGGCCGAGCTGGAGAAGCGGAAGAAGGCCCTCCAC
AAGTGGAACTCCCTGGGGCCCGGTGGTGGCGTCTTTGCGGAGTCGGCAGG
AGCCGGGGATGCGAAGAAGAATTCCACCGCCGCCGCCGCCGCCGCCGCCG
CCACGGCCGCCCCCGCCTCCTCTCCGGCATCGCCGACCACAACGACCCCC
TCCAAAAAGGGAACGGCGCCAGGGGGAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5213:2718..3096+

>mRNA_L-elsbetiae_contig5213.13317.1 ID=mRNA_L-elsbetiae_contig5213.13317.1|Name=mRNA_L-elsbetiae_contig5213.13317.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig5213:2718..3096+ (Laminarionema elsbetiae ELsaHSoW15)
CGGCGTCGAGCGAAGCCGGCAACGCGGCCGAGGGTCCCGAGAAAGAGAAG
GGCGAGGCCGGGGGGGGCGAGGGGGCCCACCGCCGCGCCGGCCGCGACGG
CGGCGAGGAGGAAGAGCTCGAGTACAGCTCTCTCTCGAGCGTTCGCATCG
TGCGGGGCCCCTCGCTGGCCGAGCTGGAGAAGCGGAAGAAGGCCCTCCAC
AAGTGGAACTCCCTGGGGCCCGGTGGTGGCGTCTTTGCGGAGTCGGCAGG
AGCCGGGGATGCGAAGAAGAATTCCACCGCCGCCGCCGCCGCCGCCGCCG
CCACGGCCGCCCCCGCCTCCTCTCCGGCATCGCCGACCACAACGACCCCC
TCCAAAAAGGGAACGGCGCCAGGGGGAGCGGCGTCGAGCGAAGCCGGCAA
CGCGGCCGAGGGTCCCGAGAAAGAGAAGGGCGAGGCCGGGGGGGGCGAGG
GGGCCCACCGCCGCGCCGGCCGCGACGGCGGCGAGGAGGAAGAGCTCGAG
TACAGCTCTCTCTCGAGCGTTCGCATCGTGCGGGGCCCCTCGCTGGCCGA
GCTGGAGAAGCGGAAGAAGGCCCTCCACAAGTGGAACTCCCTGGGGCCCG
GTGGTGGCGTCTTTGCGGAGTCGGCAGGAGCCGGGGATGCGAAGAAGAAT
TCCACCGCCGCCGCCGCCGCCGCCGCCGCCACGGCCGCCCCCGCCTCCTC
TCCGGCATCGCCGACCACAACGACCCCCTCCAAAAAGGGAACGGCGCCAG
GGGGAG
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