prot_L-elsbetiae_contig5121.13190.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5121.13190.1
Unique Nameprot_L-elsbetiae_contig5121.13190.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length173
Homology
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BLAST of mRNA_L-elsbetiae_contig5121.13190.1 vs. uniprot
Match: D7G6W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W5_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 3.900e-47
Identity = 88/141 (62.41%), Postives = 99/141 (70.21%), Query Frame = 0 
Query:   28 RANNPVTLWIAPDDDCGREIGTTEYASMMEPLRLEESENLPYYPSSTPSFDGANAPNYRAPAEAAALSLGRRVELDAVAVPPGGCVVHAQDCWHDTTDYCSAPNVSAKNHRRVLVAHFVRGDARFIDGHSLQGTGGPTYLH 168
            RANN VT+WIA DD C RE    + ++                 SS PSF GA+A NYRAPAEAAALSLGRRVE +AVAV PG CVVHAQDCWH      SAPNVSA+ HRR LV HF+RGDARFIDGHSLQ TGGP+Y++
Sbjct:  151 RANNSVTMWIALDD-CDREGSAADSSTSR---------------SSLPSFHGADASNYRAPAEAAALSLGRRVEFEAVAVKPGECVVHAQDCWHG-----SAPNVSAQRHRRALVVHFLRGDARFIDGHSLQRTGGPSYIY 270
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5121.13190.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6W5_ECTSI3.900e-4762.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.60.120.620coord: 23..168
e-value: 1.1E-6
score: 29.8
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..172
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..23
score: 0.554
NoneNo IPR availableSUPERFAMILY51197Clavaminate synthase-likecoord: 31..157

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5121contigL-elsbetiae_contig5121:6124..7656 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5121.13190.1mRNA_L-elsbetiae_contig5121.13190.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5121 5960..8508 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5121.13190.1 ID=prot_L-elsbetiae_contig5121.13190.1|Name=mRNA_L-elsbetiae_contig5121.13190.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=173bp
MMWFGSHRAVGLWLSIKIRPTSAASSSRANNPVTLWIAPDDDCGREIGTT
EYASMMEPLRLEESENLPYYPSSTPSFDGANAPNYRAPAEAAALSLGRRV
ELDAVAVPPGGCVVHAQDCWHDTTDYCSAPNVSAKNHRRVLVAHFVRGDA
RFIDGHSLQGTGGPTYLHLQQI*
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