mRNA_L-elsbetiae_contig5121.13190.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5121.13190.1
Unique NamemRNA_L-elsbetiae_contig5121.13190.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5121.13190.1 vs. uniprot
Match: D7G6W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W5_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 3.980e-43
Identity = 88/141 (62.41%), Postives = 99/141 (70.21%), Query Frame = 3 
Query:  246 RANNPVTLWIAPDDDCGREIGTTEYASMMEPLRLEESENLPYYPSSTPSFDGANAPNYRAPAEAAALSLGRRVELDAVAVPPGGCVVHAQDCWHDTTDYCSAPNVSAKNHRRVLVAHFVRGDARFIDGHSLQGTGGPTYLH 668
            RANN VT+WIA DD C RE    + ++                 SS PSF GA+A NYRAPAEAAALSLGRRVE +AVAV PG CVVHAQDCWH      SAPNVSA+ HRR LV HF+RGDARFIDGHSLQ TGGP+Y++
Sbjct:  151 RANNSVTMWIALDD-CDREGSAADSSTSR---------------SSLPSFHGADASNYRAPAEAAALSLGRRVEFEAVAVKPGECVVHAQDCWHG-----SAPNVSAQRHRRALVVHFLRGDARFIDGHSLQRTGGPSYIY 270
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5121.13190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6W5_ECTSI3.980e-4362.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5121contigL-elsbetiae_contig5121:5960..8508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.3
Seed ortholog evalue1e-37
Seed eggNOG ortholog2880.D7G6W5
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Phytanoyl-CoA dioxygenase (PhyH)
EggNOG OGs2BUAT@1,2S22Y@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1535
Cds size519
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5121.13190.1prot_L-elsbetiae_contig5121.13190.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5121 6124..7656 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816523.304125-UTR-L-elsbetiae_contig5121:5959..61231622816523.304125-UTR-L-elsbetiae_contig5121:5959..6123Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5121 5960..6123 +
1691683621.3630822-UTR-L-elsbetiae_contig5121:5959..61231691683621.3630822-UTR-L-elsbetiae_contig5121:5959..6123Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5121 5960..6123 +
1622816523.3664634-UTR-L-elsbetiae_contig5121:7656..85081622816523.3664634-UTR-L-elsbetiae_contig5121:7656..8508Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5121 7657..8508 +
1691683621.4281032-UTR-L-elsbetiae_contig5121:7656..85081691683621.4281032-UTR-L-elsbetiae_contig5121:7656..8508Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5121 7657..8508 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816523.31675-CDS-L-elsbetiae_contig5121:6123..62061622816523.31675-CDS-L-elsbetiae_contig5121:6123..6206Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5121 6124..6206 +
1691683621.3844352-CDS-L-elsbetiae_contig5121:6123..62061691683621.3844352-CDS-L-elsbetiae_contig5121:6123..6206Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5121 6124..6206 +
1622816523.328136-CDS-L-elsbetiae_contig5121:6633..66921622816523.328136-CDS-L-elsbetiae_contig5121:6633..6692Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5121 6634..6692 +
1691683621.396798-CDS-L-elsbetiae_contig5121:6633..66921691683621.396798-CDS-L-elsbetiae_contig5121:6633..6692Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5121 6634..6692 +
1622816523.3465085-CDS-L-elsbetiae_contig5121:6971..73061622816523.3465085-CDS-L-elsbetiae_contig5121:6971..7306Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5121 6972..7306 +
1691683621.4082541-CDS-L-elsbetiae_contig5121:6971..73061691683621.4082541-CDS-L-elsbetiae_contig5121:6971..7306Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5121 6972..7306 +
1622816523.3568845-CDS-L-elsbetiae_contig5121:7614..76561622816523.3568845-CDS-L-elsbetiae_contig5121:7614..7656Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5121 7615..7656 +
1691683621.4176133-CDS-L-elsbetiae_contig5121:7614..76561691683621.4176133-CDS-L-elsbetiae_contig5121:7614..7656Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5121 7615..7656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5121.13190.1

>prot_L-elsbetiae_contig5121.13190.1 ID=prot_L-elsbetiae_contig5121.13190.1|Name=mRNA_L-elsbetiae_contig5121.13190.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=173bp
MMWFGSHRAVGLWLSIKIRPTSAASSSRANNPVTLWIAPDDDCGREIGTT
EYASMMEPLRLEESENLPYYPSSTPSFDGANAPNYRAPAEAAALSLGRRV
ELDAVAVPPGGCVVHAQDCWHDTTDYCSAPNVSAKNHRRVLVAHFVRGDA
RFIDGHSLQGTGGPTYLHLQQI*
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mRNA from alignment at L-elsbetiae_contig5121:5960..8508+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5121.13190.1 ID=mRNA_L-elsbetiae_contig5121.13190.1|Name=mRNA_L-elsbetiae_contig5121.13190.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2549bp|location=Sequence derived from alignment at L-elsbetiae_contig5121:5960..8508+ (Laminarionema elsbetiae ELsaHSoW15)
GGAGAGGCTTGCCGCTTCGCTCGCAGGCTTGGATCCCGCTAGAGTTGCGC
AAGATGATGTGGTTTGGAAGCCACAGGCCCACGTGGCTGCTGTTGTCCTG
AGCGAAGGTCTGGAGAGGCTTGCCGCTTCGCTCTCAGGCTTGGATCCCGC
TAGAGTTGCGCAAGATGATGTGGTTTGGAAGCCACCGGGCTGTGGGCCTG
TGGCTTTCCATCAAAATTCGGCCTACATCAGCCGCCAGCTCGTCCCGGTG
AGTAATCTTTCCTCGGCCTCCGGGGTGGATTGCGGCCATGCTTGCGCGCA
CCAAATGATATCGTGTCTTCGTGGTGTATGTAAACTATCGACTTCCAGTT
CATATCAATCGACGCGAGATCTACACAACAGGACGCTTCACCACCCCATC
ACTCATCCGCCGTGTAACCCCGTCACCGCAAGTTTCACGCTTCGAGGCCC
TTCGGGCAGCGGTAGCATAGCATAGCATAGCATAGCATAGCATAGCATAG
CATGGCATAGCATGGCATAGCATGGCATAGCATGGCATATAGCATGACGT
GGAGCGTGGCATCCGAAGTTTCGCGTAAGCAGCCTGACATTTCGACAGGC
TCCGGGTGCGGACCGCCACCCCGTCCATCCTGATGCCCCTCCCTGCCCCT
CGCGTCTTCTGTTCTGAACCAAAGAGCAAACAACCCGGTGACGTTGTGGA
TCGCACCGGATGACGACTGTGGTCGGGAGATAGGTGAGCACGGTGTTGGA
TTCAGAATGTATCGGGCGTTGATTGTCGCGCTACATACATACTCGGCATG
CCCTCGTCGCTGAAAGGGGCGCAGTCGTTGCCGGTGCTGCTCTTAGAAGG
CAGGAAGGGCCAGCTATGGTGGCCGTTCGCGAACGTACATCTTGCGGGGG
GCGAATTCTCCTGTAACTCATTCCTCATGTCTGCGCTTCGGGGTTAAGGC
TGCGTGCGTGCATGCCGTGCTGCAAAAACATGTTTCGTCGCTCCGCACTC
TGTCCGCATCAGGGACGACCGAGTACGCCTCCATGATGGAACCACTCCGA
CTGGAAGAGTCGGAAAACCTGCCGTATTACCCCTCCTCCACCCCCTCCTT
CGACGGAGCCAATGCACCCAACTACCGCGCACCGGCAGAGGCGGCTGCTC
TGAGCCTCGGGCGCCGGGTGGAACTCGATGCGGTCGCTGTGCCGCCTGGA
GGGTGTGTGGTGCACGCGCAGGACTGCTGGCATGATACTACTGACTACTG
TAGCGCCCCAAACGTTTCGGCGAAGAACCACCGTCGAGTTCTGGTGGCGC
ACTTCGTCAGAGGAGATGCGAGATTCATCGATGGCCACTCGCTCCAGGTT
TATGGACATATGCAGGCTAGTTGTTGTGCTGGTATCTTGCAAGGTCGCCT
CGAAAAAATGGGGTTGGTTGAGTGAGACGACGCGTCTTGCTGGAAGCTCA
GGAACGGAGGCTGGCTCTGCCCAGATCGGACAGCGACAGCGAGCGGGGAC
GCTAAGGTTTAGGTATCGACTAAAGGACCCTCCCTAAAGTTGTACGAGTA
TAAACCCCACAAAATACAAACGATTGTGTCGTCAATCAGGTGTGTGTGCC
AACTGTCTCTCCACCTTCACAACAACATACCAATGTTGCCCCACCCACGT
CGCAGGGAACCGGTGGTCCTACGTATCTACATCTACAGCAGATATAAATT
TCGACCTCACCGTCGACGAGGGAAAGGGGCGGCTGAACCCTTCTCGCGAT
AAAAAATAGCAGGCAAGCACCGCAGACGGGGGGAGTGGAGGCCTTGGGGA
AAGGAATCCTTCTGTGTGACCACGGTTCGATACTCTGGCAAGGTGTCATC
GTGACAGGGAGCAGCCCATCGAGCACTGATGGGAATGTGTGAAGAAGAGA
AAAAAGGAAACAAAATACAGGGGCTGGACAGCACCATGCTTTCCGAGGAG
GCATTTCCTGTCACATTCTCCCAAGACGGGGGCACCGGACAAAGTGGATC
GACACCTTTCTCGCGTCGTACATCGATGGCTGGCGTGTTGTTTGGTGCTT
ACCGAACACGCCGAGTTGCTTGAGGGCGGTGGCTTGGGTTCTGTCGTTCG
ATATTAGGACCTATGCAATGTGAGGCACGAAGGATTAATGCTCTATGATA
TTAAGCCACGAAATCGCGGTCCAAAGAGCTACGTGGTTGTAGTCACCCCC
CGTGAACCGGCCCCCTTTAACCATATAGCATTTACTATAGGCTCGTTTTA
TGTAGGATTTTGGGTGGCGTTTGGGGGGAGGGGATGGGGCCTTCGTACCC
CCTCCCCCCTTAAAGCTCAAAAATTAAGTTTAAGGGCATAGGTGTCGGAA
TTTATGTTGTTACGCGCCCGTATCCAACAAGCACCTGCTGTTGCAAAAGC
TTATTATGCACCAGGAGACTCAAACCTAGGTTGCAGTTGGAGGTAAAAGG
CAGTAAGGAAGACCTGCGCTAGGTTTCCGGCCCTCTAACTAAACCACGGT
GATCGGCCTAACGTACAGCTTGATCAAACTCTTACCCTGATCCTAACCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5121:5960..8508+

>mRNA_L-elsbetiae_contig5121.13190.1 ID=mRNA_L-elsbetiae_contig5121.13190.1|Name=mRNA_L-elsbetiae_contig5121.13190.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1038bp|location=Sequence derived from alignment at L-elsbetiae_contig5121:5960..8508+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGTGGTTTGGAAGCCACCGGGCTGTGGGCCTGTGGCTTTCCATCAA
AATTCGGCCTACATCAGCCGCCAGCTCGTCCCGATGATGTGGTTTGGAAG
CCACCGGGCTGTGGGCCTGTGGCTTTCCATCAAAATTCGGCCTACATCAG
CCGCCAGCTCGTCCCGAGCAAACAACCCGGTGACGTTGTGGATCGCACCG
GATGACGACTGTGGTCGGGAGATAGAGCAAACAACCCGGTGACGTTGTGG
ATCGCACCGGATGACGACTGTGGTCGGGAGATAGGGACGACCGAGTACGC
CTCCATGATGGAACCACTCCGACTGGAAGAGTCGGAAAACCTGCCGTATT
ACCCCTCCTCCACCCCCTCCTTCGACGGAGCCAATGCACCCAACTACCGC
GCACCGGCAGAGGCGGCTGCTCTGAGCCTCGGGCGCCGGGTGGAACTCGA
TGCGGTCGCTGTGCCGCCTGGAGGGTGTGTGGTGCACGCGCAGGACTGCT
GGCATGATACTACTGACTACTGTAGCGCCCCAAACGTTTCGGCGAAGAAC
CACCGTCGAGTTCTGGTGGCGCACTTCGTCAGAGGAGATGCGAGATTCAT
CGATGGCCACTCGCTCCAGGGACGACCGAGTACGCCTCCATGATGGAACC
ACTCCGACTGGAAGAGTCGGAAAACCTGCCGTATTACCCCTCCTCCACCC
CCTCCTTCGACGGAGCCAATGCACCCAACTACCGCGCACCGGCAGAGGCG
GCTGCTCTGAGCCTCGGGCGCCGGGTGGAACTCGATGCGGTCGCTGTGCC
GCCTGGAGGGTGTGTGGTGCACGCGCAGGACTGCTGGCATGATACTACTG
ACTACTGTAGCGCCCCAAACGTTTCGGCGAAGAACCACCGTCGAGTTCTG
GTGGCGCACTTCGTCAGAGGAGATGCGAGATTCATCGATGGCCACTCGCT
CCAGGGAACCGGTGGTCCTACGTATCTACATCTACAGCAGATATAAGGAA
CCGGTGGTCCTACGTATCTACATCTACAGCAGATATAA
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