mRNA_L-elsbetiae_contig512.13184.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig512.13184.1
Unique NamemRNA_L-elsbetiae_contig512.13184.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig512.13184.1 vs. uniprot
Match: D7FPC4_ECTSI (Ubiquitin activating enzyme E1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPC4_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 4.330e-38
Identity = 72/92 (78.26%), Postives = 84/92 (91.30%), Query Frame = 3 
Query:    3 MGSGLQSMLAETDSAGRLRIRAVARIKLLLEQVKDNIKDPDRSLCSDLQRMAELRPQVFREPELLEAVGEILTGRGAKTAIQASGGREAPCV 278
            MGSGLQ+ L ET+ +G LR +AV  IK LL+QVK+NIK+PDRSLCSDLQRMAELRP+VFREPELLE+VGE+LTG+GAKTAIQ+SGGREAPCV
Sbjct:   29 MGSGLQAALNETEDSGVLRTKAVDTIKGLLQQVKENIKNPDRSLCSDLQRMAELRPKVFREPELLESVGEVLTGKGAKTAIQSSGGREAPCV 120
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BLAST of mRNA_L-elsbetiae_contig512.13184.1 vs. uniprot
Match: A0A6H5L4I3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I3_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 6.150e-26
Identity = 55/76 (72.37%), Postives = 65/76 (85.53%), Query Frame = 3 
Query:   51 RLRIRAVARIKLLLEQVKDNIKDPDRSLCSDLQRMAELRPQVFREPELLEAVGEILTGRGAKTAIQASGGREAPCV 278
            R+  R   +  LL+  V  NI++PDRSLCSDLQRMAELRP+VFREPELLEAVGE+LTG+GAKTAIQ+SGG+EAPCV
Sbjct:    4 RVDSRVWQQFTLLVVAVPANIQNPDRSLCSDLQRMAELRPKVFREPELLEAVGEVLTGKGAKTAIQSSGGQEAPCV 79
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig512.13184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPC4_ECTSI4.330e-3878.26Ubiquitin activating enzyme E1 n=1 Tax=Ectocarpus ... [more]
A0A6H5L4I3_9PHAE6.150e-2672.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig512contigL-elsbetiae_contig512:3176..4994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.4
Seed ortholog evalue2.6e-32
Seed eggNOG ortholog2880.D7FPC4
Preferred nameINTS1
KEGG koko:K03178,ko:K13138
KEGG Pathwayko04120,ko05012,map04120,map05012
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006351,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009301,GO:0009790,GO:0009792,GO:0009892,GO:0009987,GO:0010466,GO:0010467,GO:0010605,GO:0010941,GO:0010951,GO:0016070,GO:0016073,GO:0016180,GO:0016591,GO:0018130,GO:0019222,GO:0019438,GO:0030162,GO:0030880,GO:0031123,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032039,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034470,GO:0034472,GO:0034474,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040007,GO:0042795,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043154,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043281,GO:0043628,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045861,GO:0046483,GO:0048519,GO:0048523,GO:0048589,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051336,GO:0051346,GO:0052547,GO:0052548,GO:0055029,GO:0060255,GO:0060548,GO:0061695,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234,GO:2000116,GO:2000117
EggNOG free text desc.U2 snRNA 3'-end processing
EggNOG OGsCOG0476@1,KOG2012@2759,KOG4596@1,KOG4596@2759
Ec32 ortholog descriptionMolybdenum cofactor biosynthesis, MoeB
Ec32 orthologEc-15_003920.1
EC6.2.1.45
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041,ko04121,ko04147
Exons2
Model size280
Cds size276
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig512.13184.1prot_L-elsbetiae_contig512.13184.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig512 3176..4992 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816522.6127956-CDS-L-elsbetiae_contig512:3175..33371622816522.6127956-CDS-L-elsbetiae_contig512:3175..3337Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig512 3176..3337 -
1691683620.8132532-CDS-L-elsbetiae_contig512:3175..33371691683620.8132532-CDS-L-elsbetiae_contig512:3175..3337Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig512 3176..3337 -
1622816522.6235893-CDS-L-elsbetiae_contig512:4878..49921622816522.6235893-CDS-L-elsbetiae_contig512:4878..4992Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig512 4879..4992 -
1691683620.8249586-CDS-L-elsbetiae_contig512:4878..49921691683620.8249586-CDS-L-elsbetiae_contig512:4878..4992Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig512 4879..4992 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816522.6337345-UTR-L-elsbetiae_contig512:4992..49941622816522.6337345-UTR-L-elsbetiae_contig512:4992..4994Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig512 4993..4994 -
1691683620.833912-UTR-L-elsbetiae_contig512:4992..49941691683620.833912-UTR-L-elsbetiae_contig512:4992..4994Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig512 4993..4994 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig512.13184.1

>prot_L-elsbetiae_contig512.13184.1 ID=prot_L-elsbetiae_contig512.13184.1|Name=mRNA_L-elsbetiae_contig512.13184.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
MGSGLQSMLAETDSAGRLRIRAVARIKLLLEQVKDNIKDPDRSLCSDLQR
MAELRPQVFREPELLEAVGEILTGRGAKTAIQASGGREAPCV
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mRNA from alignment at L-elsbetiae_contig512:3176..4994-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig512.13184.1 ID=mRNA_L-elsbetiae_contig512.13184.1|Name=mRNA_L-elsbetiae_contig512.13184.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1819bp|location=Sequence derived from alignment at L-elsbetiae_contig512:3176..4994- (Laminarionema elsbetiae ELsaHSoW15)
CAATGGGCTCTGGCCTCCAGTCCATGCTTGCTGAGACGGACAGCGCTGGT
CGGCTGCGTATTCGCGCGGTGGCGAGGATCAAATTGCTGCTGGAACAAGT
GAAAGATAACATTAAGGTGAGCGAGCCCAAGGGGACGATGCACAGCACGA
GCGATAGGAGGTGTGAGGGAGACAGTACATACAAGAGTGGTGGGTGTGTG
TGTGTTTGTGCAGTAAGTATTGGTGGTGTGTGCTGTTGTTGTCGATGCTG
CTCGCGTGCCTTGATGTCGGTTTTCCGCCTGTGGATTGCTGTCGTTGGGG
CATGGTCGAGTGGTCTTGTCTTGCAGTGAATGTCGACCATGACGGTATCA
ACACGAAATATTCTCTCGCAGCACGAGTCTGTCTCCCCACCGACGCGCGA
AGATAGGCACTGCTGCGTTACTTCCTCCTGTGTTTTTCACAGAACAGCAT
CGTTGACCGCCTCCTCGTTGTAGTGCTGTGTGCGCATGTCTGGACGACCC
TGCGGCCTTGACAGAAACATCCACCAAAAAGTGAAGGCATATGTATCTAG
CGATTCCCTCGTCTGGCCGGCCTCGAAAGCAGGCGATGCTTACATACATA
CATAAAATGCACTCGTAGAAGCTGCTGTCTTCCTACGTGTCACCCACATT
TCTCCCGTGCCCTCTCGGCAGCTGGATCGTGTGTGTGCAGTCACAGGTCG
CCTTTTCCCACAACTAGACAAGGAGTTGCCCACCCCCGCTTTCACTATGC
TTGTCCCACGCGTCGCGTTGCATTTTGTGCATTTTGTGGCCCCCATTGTC
GTCTCTTTGTCCATCTCTTGTCACCACTACGTGCATTTAAACTTGTCAAG
TCCCCTGCGCAAGCAGCAGAAGACCACAAGCTGTTTATGATACTTGGTAC
CAGTTAGGGACATAATGAGCCGCACACCAACCACAGCACCAACCACAGCA
CCGGCTCAATACCTTGCAGTGATCTGACCCACCCACCACCACCCGCGGAC
CCACGGCCCCAACCCCACCCAACCCACCCAGCAGTGATAACGTGGAGGGT
TACGACATGCGGTCTCTTTGTCCGCGGTCTGGCTAGAAAATCGATTTATG
CCAGCACACATCGTTTCCTGCCTGCTGGTGTATGTTGACCTGTGTGCGAG
CTATACGCTCTCGGCTGTCACCTGACTCTCTGTCTCTTGTCTCTGTCTCT
CTCTTGTGGAGCACAACTCTACCGGCGTGACAACCGGTTCCCTATTTTTC
TTACCCCTCAGAAGGCAACAGATCGTCAGTAGGTGCTCTATGGACGTTGT
TCTGATCAAGAAGGAGGATTATTTCGGTCGCCCGGTTAATCGAGTTTGAG
GGCGCTGTATACATGCGATCGGAGGAACTTTGGCCGATATGTCGAACCTT
TTTTTCCCTCGTGGGGGATGAAGGGAAAAAAAGGTCGCGGCTTCGCCGCT
CCGCGGCTCATTAAAATAATATCCAACAACCGATACTTATACTGCAACCT
GCGGGAAAAAAACCAAAACGAACCAAAACGCCACCAACCAAGCCTTCAAC
CACTTGTTTCATTTCTACCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCTT
TTTTCATCTCTCCCCCCCCCCCCCCCTCCCTTGTGCTGAATAACCTTTAA
CGTGAAGGACCCCGACCGCAGCCTGTGCAGCGATCTCCAGAGGATGGCAG
AGTTACGGCCGCAGGTATTCCGCGAGCCAGAGCTGCTGGAGGCAGTAGGC
GAGATTCTCACGGGCAGGGGCGCGAAGACGGCGATACAGGCGTCCGGAGG
GCGGGAAGCGCCCTGCGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig512:3176..4994-

>mRNA_L-elsbetiae_contig512.13184.1 ID=mRNA_L-elsbetiae_contig512.13184.1|Name=mRNA_L-elsbetiae_contig512.13184.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig512:3176..4994- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCTCTGGCCTCCAGTCCATGCTTGCTGAGACGGACAGCGCTGGTCG
GCTGCGTATTCGCGCGGTGGCGAGGATCAAATTGCTGCTGGAACAAGTGA
AAGATAACATTAAGATGGGCTCTGGCCTCCAGTCCATGCTTGCTGAGACG
GACAGCGCTGGTCGGCTGCGTATTCGCGCGGTGGCGAGGATCAAATTGCT
GCTGGAACAAGTGAAAGATAACATTAAGGACCCCGACCGCAGCCTGTGCA
GCGATCTCCAGAGGATGGCAGAGTTACGGCCGCAGGTATTCCGCGAGCCA
GAGCTGCTGGAGGCAGTAGGCGAGATTCTCACGGGCAGGGGCGCGAAGAC
GGCGATACAGGCGTCCGGAGGGCGGGAAGCGCCCTGCGTGGACCCCGACC
GCAGCCTGTGCAGCGATCTCCAGAGGATGGCAGAGTTACGGCCGCAGGTA
TTCCGCGAGCCAGAGCTGCTGGAGGCAGTAGGCGAGATTCTCACGGGCAG
GGGCGCGAAGACGGCGATACAGGCGTCCGGAGGGCGGGAAGCGCCCTGCG
TG
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