mRNA_L-elsbetiae_contig5115.13175.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5115.13175.1
Unique NamemRNA_L-elsbetiae_contig5115.13175.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5115.13175.1 vs. uniprot
Match: D8LER3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LER3_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 1.220e-54
Identity = 87/95 (91.58%), Postives = 91/95 (95.79%), Query Frame = 1
Query:    1 LFQASLLPYLAFLWLLSRKETRTPEGGTFGFAFLLVFVVATIPAGIYAKTEYNEILANVDYLHGVAESFLTITNLFIVSAFRKAVVSQQPTASGE 285
            LFQASL PYLAFLWLLSRKET+TPEGGTFGFAFLLVFVVATIPAGIYAKTEYNEILANVDYLHG+AESFLT+TNLFIVSAFRKAVV +QP A GE
Sbjct:   42 LFQASLFPYLAFLWLLSRKETKTPEGGTFGFAFLLVFVVATIPAGIYAKTEYNEILANVDYLHGIAESFLTLTNLFIVSAFRKAVVGKQPAAGGE 136          
BLAST of mRNA_L-elsbetiae_contig5115.13175.1 vs. uniprot
Match: A0A6H5KGT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGT7_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 7.150e-50
Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = 1
Query:    1 LFQASLLPYLAFLWLLSRKETRTPEGGTFGFAFLLVFVVATIPAGIYAKTEYNEILANVDYLHGVAESFLTITNLFIVSAFRKAVVSQQPTA 276
            LFQASLLPYLAFLWLLSRKET+TPEGGTFGFAFLLVFVVATIPAGIYAKTEYNEILANVDYLHG+AESFLT+TNLFIVSAFRKAVV +QP A
Sbjct:  150 LFQASLLPYLAFLWLLSRKETKTPEGGTFGFAFLLVFVVATIPAGIYAKTEYNEILANVDYLHGIAESFLTLTNLFIVSAFRKAVVGKQPAA 241          
BLAST of mRNA_L-elsbetiae_contig5115.13175.1 vs. uniprot
Match: A0A835YND2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YND2_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.670e-39
Identity = 69/86 (80.23%), Postives = 75/86 (87.21%), Query Frame = 1
Query:    1 LFQASLLPYLAFLWLLSRKETRTPEGGTFGFAFLLVFVVATIPAGIYAKTEYNEILANVDYLHGVAESFLTITNLFIVSAFRKAVV 258
            LFQASL PYLAFL+ LS+ ET+TP+GGTF F FLLVFV ATIPAGI AK +YNEILANVDYLHGVAESFLTITNL IV AFR AV+
Sbjct:   91 LFQASLAPYLAFLYFLSKPETKTPKGGTFSFTFLLVFVAATIPAGILAKVQYNEILANVDYLHGVAESFLTITNLLIVKAFRDAVI 176          
BLAST of mRNA_L-elsbetiae_contig5115.13175.1 vs. uniprot
Match: A0A0G4G427_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4G427_VITBC)

HSP 1 Score: 119 bits (298), Expect = 5.440e-30
Identity = 62/88 (70.45%), Postives = 66/88 (75.00%), Query Frame = 1
Query:    1 LFQASLLPYLAFLWLLSRKETRTPEGGTFGFAFLLVFVVATIPAGIYAKTEYNEILANVDYLHGVAESFLTITNLFIVSAFRKAVVSQ 264
            LF ASL PYLAFLW LSR ETR P    FGF FLLVFV  TIPAGI AK  YNE LANVDYLHG AESFLT+TNL IV   R+A+V +
Sbjct:   24 LFAASLFPYLAFLWFLSRPETRMPRLANFGFQFLLVFVGMTIPAGILAKVWYNEKLANVDYLHGGAESFLTVTNLLIVIGMRQAIVDE 111          
BLAST of mRNA_L-elsbetiae_contig5115.13175.1 vs. uniprot
Match: A0A2V3IH42_9FLOR (Ycf49-like protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IH42_9FLOR)

HSP 1 Score: 116 bits (290), Expect = 2.520e-29
Identity = 59/83 (71.08%), Postives = 66/83 (79.52%), Query Frame = 1
Query:    4 FQASLLPYLAFLWLLSRKETRTPEGGTFGFAFLLVFVVATIPAGIYAKTEYNEILANVDYLHGVAESFLTITNLFIVSAFRKA 252
            F ASL PYLAFL+LL+RK+   P    FGF FLLVFV ATIPAGIYAKT Y++ILANVD+LHG AES LTITNL IV  FR+A
Sbjct:   21 FAASLFPYLAFLYLLNRKQVNCPPLANFGFRFLLVFVFATIPAGIYAKTHYHDILANVDWLHGSAESLLTITNLLIVLGFRQA 103          
BLAST of mRNA_L-elsbetiae_contig5115.13175.1 vs. uniprot
Match: A0A7S4FPV4_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FPV4_9EUGL)

HSP 1 Score: 117 bits (292), Expect = 8.430e-29
Identity = 60/85 (70.59%), Postives = 68/85 (80.00%), Query Frame = 1
Query:    1 LFQASLLPYLAFLWLLSRKETRTPEGGTFGFAFLLVFVVATIPAGIYAKTEYNEILANVDYLHGVAESFLTITNLFIVSAFRKAV 255
            LFQASL+PYLAFL+ L R  T+ P G   GFAFLLVFV ATIPAGIYAKT+Y +ILANVD+LHG AES LTITNL+IV   R A+
Sbjct:  136 LFQASLVPYLAFLFFLGRPSTKLPAGAWRGFAFLLVFVFATIPAGIYAKTQYGDILANVDWLHGGAESLLTITNLWIVFGLRSAM 220          
BLAST of mRNA_L-elsbetiae_contig5115.13175.1 vs. uniprot
Match: A0A1X6NWM6_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NWM6_PORUM)

HSP 1 Score: 112 bits (281), Expect = 2.690e-28
Identity = 59/87 (67.82%), Postives = 65/87 (74.71%), Query Frame = 1
Query:    1 LFQASLLPYLAFLWLLSRKETRTPEGGTFGFAFLLVFVVATIPAGIYAKTEYNEILANVDYLHGVAESFLTITNLFIVSAFRKAVVS 261
            LF ASL PYLAFL+ LSR ET  P+G   GFAFLLVFV ATIPAGIYAK    +ILANVD+LHG AES LT+TNL IV  FR  + S
Sbjct:  131 LFAASLFPYLAFLYFLSRPETGCPKGAYRGFAFLLVFVFATIPAGIYAKVVVGDILANVDWLHGSAESLLTVTNLLIVGGFRAGLAS 217          
BLAST of mRNA_L-elsbetiae_contig5115.13175.1 vs. uniprot
Match: UPI001A0F1549 (DUF3593 domain-containing protein n=1 Tax=filamentous cyanobacterium LEGE 11480 TaxID=2777977 RepID=UPI001A0F1549)

HSP 1 Score: 106 bits (265), Expect = 5.060e-28
Identity = 52/85 (61.18%), Postives = 65/85 (76.47%), Query Frame = 1
Query:    1 LFQASLLPYLAFLWLLSRKETRTPEGGTFGFAFLLVFVVATIPAGIYAKTEYNEILANVDYLHGVAESFLTITNLFIVSAFRKAV 255
            LF  SL PYL FLW +++ + +TP+G   GF  LLVFV  TIPAGIYAKT YN  LANVD+LHG AESFLT+TN+F+V  F++A+
Sbjct:    6 LFALSLFPYLGFLWFMTKSQ-QTPKGALIGFYLLLVFVGVTIPAGIYAKTVYNAELANVDWLHGSAESFLTLTNIFVVIGFQQAI 89          
BLAST of mRNA_L-elsbetiae_contig5115.13175.1 vs. uniprot
Match: A0A7S0W6D8_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W6D8_9CRYP)

HSP 1 Score: 108 bits (271), Expect = 6.150e-28
Identity = 55/89 (61.80%), Postives = 67/89 (75.28%), Query Frame = 1
Query:    1 LFQASLLPYLAFLWLLSRKETRTPEGGTFGFAFLLVFVVATIPAGIYAKTEYNEILANVDYLHGVAESFLTITNLFIVSAFRKAVVSQQ 267
            LF  SL PYL FL+ L ++ET TP  G FGF FLLVFV A+IPA I AK  Y +ILANVD+LHG +E FLT+TN+FIV  FR+AV S++
Sbjct:   34 LFAFSLFPYLGFLYHLDKEETNTPSLGNFGFRFLLVFVFASIPAAIAAKALYGDILANVDWLHGSSEFFLTLTNIFIVLGFRRAVASRE 122          
BLAST of mRNA_L-elsbetiae_contig5115.13175.1 vs. uniprot
Match: A0A0G4G622_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G622_9ALVE)

HSP 1 Score: 114 bits (286), Expect = 7.870e-28
Identity = 57/85 (67.06%), Postives = 66/85 (77.65%), Query Frame = 1
Query:    1 LFQASLLPYLAFLWLLSRKETRTPEGGTFGFAFLLVFVVATIPAGIYAKTEYNEILANVDYLHGVAESFLTITNLFIVSAFRKAV 255
            LF +SL PYLAFLW L R ET+TP    FGF FLLVFV +TIPAGIYAKT+Y E LANVD+LHG +E+FL ITNL IV   R+A+
Sbjct:   86 LFSSSLAPYLAFLWFLGRPETKTPPLALFGFRFLLVFVFSTIPAGIYAKTQYGEKLANVDWLHGGSEAFLCITNLIIVLGMRRAL 170          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5115.13175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LER3_ECTSI1.220e-5491.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGT7_9PHAE7.150e-5093.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YND2_9STRA1.670e-3980.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0G4G427_VITBC5.440e-3070.45Uncharacterized protein n=3 Tax=Vitrella brassicaf... [more]
A0A2V3IH42_9FLOR2.520e-2971.08Ycf49-like protein n=1 Tax=Gracilariopsis chorda T... [more]
A0A7S4FPV4_9EUGL8.430e-2970.59Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A1X6NWM6_PORUM2.690e-2867.82Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
UPI001A0F15495.060e-2861.18DUF3593 domain-containing protein n=1 Tax=filament... [more]
A0A7S0W6D8_9CRYP6.150e-2861.80Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A0G4G622_9ALVE7.870e-2867.06Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5115contigL-elsbetiae_contig5115:3105..3906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.8
Seed ortholog evalue5.1e-42
Seed eggNOG ortholog2880.D8LER3
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0003824,GO:0004103,GO:0004305,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006629,GO:0006644,GO:0006646,GO:0006650,GO:0006656,GO:0006657,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019637,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0045017,GO:0046337,GO:0046470,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:0097164,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.positive regulation of TORC1 signaling
EggNOG OGsKOG2445@1,KOG2445@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionProtein of unknown function DUF3593
Ec32 orthologEc-26_000850.1
Exons2
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816521.9418488-CDS-L-elsbetiae_contig5115:3104..32621622816521.9418488-CDS-L-elsbetiae_contig5115:3104..3262Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5115 3105..3262 -
1691683620.374554-CDS-L-elsbetiae_contig5115:3104..32621691683620.374554-CDS-L-elsbetiae_contig5115:3104..3262Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5115 3105..3262 -
1622816521.9531186-CDS-L-elsbetiae_contig5115:3764..39061622816521.9531186-CDS-L-elsbetiae_contig5115:3764..3906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5115 3765..3906 -
1691683620.3861794-CDS-L-elsbetiae_contig5115:3764..39061691683620.3861794-CDS-L-elsbetiae_contig5115:3764..3906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5115 3765..3906 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5115.13175.1prot_L-elsbetiae_contig5115.13175.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5115 3105..3906 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5115.13175.1

>prot_L-elsbetiae_contig5115.13175.1 ID=prot_L-elsbetiae_contig5115.13175.1|Name=mRNA_L-elsbetiae_contig5115.13175.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
LFQASLLPYLAFLWLLSRKETRTPEGGTFGFAFLLVFVVATIPAGIYAKT
EYNEILANVDYLHGVAESFLTITNLFIVSAFRKAVVSQQPTASGEGATQS
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mRNA from alignment at L-elsbetiae_contig5115:3105..3906-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5115.13175.1 ID=mRNA_L-elsbetiae_contig5115.13175.1|Name=mRNA_L-elsbetiae_contig5115.13175.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=802bp|location=Sequence derived from alignment at L-elsbetiae_contig5115:3105..3906- (Laminarionema elsbetiae ELsaHSoW15)
CTGTTCCAGGCCTCGCTGCTGCCGTACCTCGCATTCCTGTGGCTCCTGAG CAGAAAGGAGACTCGGACGCCGGAGGGGGGGACGTTCGGGTTCGCCTTCC TGCTCGTGTTCGTGGTGGCGACGATCCCCGCGGGGATCTACGGTGAGAGC GGGGGTGTATTTTGTATTTGCCTGCTGTGCGCTTGCTCCTCGCGTGTGCT CGTAAACACGCACACGCTTCGTAGGAGACTTGGGGGTGAGCTACGAGGTC ACGAAAGGCAGGCGCTTCCAGACCGAGAGAGAGGCTCTAGACTATAGGAG TATAGATATGTAGTTGTCGCATGAGGGGTCTTGTCTTGAGTGGGACGATG TTCCAAGTCCGCCGACGAGAAGAAGCACTGATCTAGTTTAGTTGCACAAC GCGTCGGGGGTTAACAAACCCCGGGGGTTGGCGCGGACCCTATCCGCAGG GTCCGACGGCACAACTCCCCTCTCCTCGCACACCCCACCCCTGTGCGGAT AAATAAGGCAGCGGATAAATACTTCAGCTTTTTTTTTCTCGAAGGAACCG CCCTGAAAGCCATACCTCCCGTCTACAATATATCCCCCCGTCTGTGCGCG CTGATGTTGCCAATGCTTGAAACGACGGCACAATTCCACTGCAGCCAAGA CGGAGTACAACGAGATCCTCGCCAACGTGGACTACCTTCACGGCGTCGCG GAGTCGTTCCTTACGATCACGAACCTCTTCATCGTGTCTGCGTTCCGGAA AGCGGTCGTCAGCCAGCAGCCGACCGCGAGCGGTGAGGGGGCTACACAGA GT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5115:3105..3906-

>mRNA_L-elsbetiae_contig5115.13175.1 ID=mRNA_L-elsbetiae_contig5115.13175.1|Name=mRNA_L-elsbetiae_contig5115.13175.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig5115:3105..3906- (Laminarionema elsbetiae ELsaHSoW15)
CTGTTCCAGGCCTCGCTGCTGCCGTACCTCGCATTCCTGTGGCTCCTGAG
CAGAAAGGAGACTCGGACGCCGGAGGGGGGGACGTTCGGGTTCGCCTTCC
TGCTCGTGTTCGTGGTGGCGACGATCCCCGCGGGGATCTACGCTGTTCCA
GGCCTCGCTGCTGCCGTACCTCGCATTCCTGTGGCTCCTGAGCAGAAAGG
AGACTCGGACGCCGGAGGGGGGGACGTTCGGGTTCGCCTTCCTGCTCGTG
TTCGTGGTGGCGACGATCCCCGCGGGGATCTACGCCAAGACGGAGTACAA
CGAGATCCTCGCCAACGTGGACTACCTTCACGGCGTCGCGGAGTCGTTCC
TTACGATCACGAACCTCTTCATCGTGTCTGCGTTCCGGAAAGCGGTCGTC
AGCCAGCAGCCGACCGCGAGCGGTGAGGGGGCTACACAGAGTCCAAGACG
GAGTACAACGAGATCCTCGCCAACGTGGACTACCTTCACGGCGTCGCGGA
GTCGTTCCTTACGATCACGAACCTCTTCATCGTGTCTGCGTTCCGGAAAG
CGGTCGTCAGCCAGCAGCCGACCGCGAGCGGTGAGGGGGCTACACAGAGT
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