mRNA_L-elsbetiae_contig4958.12927.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig4958.12927.1
Unique Name	mRNA_L-elsbetiae_contig4958.12927.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

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BLAST of mRNA_L-elsbetiae_contig4958.12927.1 vs. uniprot
Match: A0A6H5JLT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT0_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 6.340e-23
Identity = 81/175 (46.29%), Postives = 102/175 (58.29%), Query Frame = 3

Query:  333 LYDSTRQAIREASA-------LGRQQEA---------DLLQQTLDRLWKEAHDEGGGNQPRSGRS--------SGTPCHQQDEHDAEKVPISAHASGNGGAGGESSDATGVGRRREDECLGLLAEAFADDLDVLRKDSTFTGSSKNIAAMADMMRCLASGMDSTEQTMLLENATR 785
            LYD+ RQAIR+ASA        GR Q+A         DLL + L R  +E +    G Q  +  +        SG    Q+  HD  + P  A  +G+  +GGE   AT     +EDECLGL+AEAFADDLD+LRKD  F GS+ +IAAMADMMRC+A G+DS EQ MLL+NA R
Sbjct:   10 LYDAARQAIRDASAGGAATEAAGRDQDAYVAKRPQHNDLLDKKLHRSVEEMYQSTRGEQNSAQGTQDVQFSGISGNKKRQR--HDEVEKP--AEDAGDA-SGGEEGHAT----TQEDECLGLMAEAFADDLDLLRKDEHFGGSANDIAAMADMMRCIAGGLDSIEQRMLLDNAAR 175

[Close]

BLAST of mRNA_L-elsbetiae_contig4958.12927.1 vs. uniprot
Match: D8LNF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNF4_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.030e-14
Identity = 66/159 (41.51%), Postives = 83/159 (52.20%), Query Frame = 3

Query:  333 LYDSTRQAIREASA-------LGRQQEA---------DLLQQTLDRLWKEAHDEGGGNQPRSGRSSGTPCHQ------------QDEHDAEKVPISAHASGNGGAGGESSDATGVGRRREDECLGLLAEAFADDLDVLRKDSTFTGSSKNIAAMADMMR 725
            LYD+ R+AIR+ASA       +GR Q+A         D+L + L R  +E +    G Q  S  + GTP  Q            +  HD E+ P          AG  S    G    +EDECLGL+AEAFADDLD+LRKD  F GS+ +IAAMADMMR
Sbjct:   10 LYDAAREAIRDASAGGAAAEAVGRDQDACVATRPQHDDVLDKKLHRSVEEMYHSTRGQQNSS--TQGTPDVQLSASDSGVGNKKRQRHDGEEAPTED-------AGDASDGEEGHPTTQEDECLGLMAEAFADDLDLLRKDDHFGGSANDIAAMADMMR 159

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig4958.12927.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig4958.12927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JLT0_9PHAE	6.340e-23	46.29	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LNF4_ECTSI	1.030e-14	41.51	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig4958	contig	L-elsbetiae_contig4958:8062..10521 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-04_004060.1
Exons	2
Model size	1608
Cds size	783
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig4958.12927.1	prot_L-elsbetiae_contig4958.12927.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig4958 8067..9701 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816495.3422596-UTR-L-elsbetiae_contig4958:8061..8066	1622816495.3422596-UTR-L-elsbetiae_contig4958:8061..8066	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig4958 8062..8066 +
1691683601.0398748-UTR-L-elsbetiae_contig4958:8061..8066	1691683601.0398748-UTR-L-elsbetiae_contig4958:8061..8066	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig4958 8062..8066 +
1622816495.376564-UTR-L-elsbetiae_contig4958:9701..10521	1622816495.376564-UTR-L-elsbetiae_contig4958:9701..10521	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig4958 9702..10521 +
1691683601.0814424-UTR-L-elsbetiae_contig4958:9701..10521	1691683601.0814424-UTR-L-elsbetiae_contig4958:9701..10521	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig4958 9702..10521 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816495.3527796-CDS-L-elsbetiae_contig4958:8066..8785	1622816495.3527796-CDS-L-elsbetiae_contig4958:8066..8785	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig4958 8067..8785 +
1691683601.0550892-CDS-L-elsbetiae_contig4958:8066..8785	1691683601.0550892-CDS-L-elsbetiae_contig4958:8066..8785	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig4958 8067..8785 +
1622816495.364598-CDS-L-elsbetiae_contig4958:9637..9701	1622816495.364598-CDS-L-elsbetiae_contig4958:9637..9701	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig4958 9638..9701 +
1691683601.070114-CDS-L-elsbetiae_contig4958:9637..9701	1691683601.070114-CDS-L-elsbetiae_contig4958:9637..9701	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig4958 9638..9701 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig4958:8062..10521+
coding sequence from alignment at L-elsbetiae_contig4958:8062..10521+

protein sequence of mRNA_L-elsbetiae_contig4958.12927.1

>prot_L-elsbetiae_contig4958.12927.1 ID=prot_L-elsbetiae_contig4958.12927.1|Name=mRNA_L-elsbetiae_contig4958.12927.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=261bp
MRKSVGGGLGRMQTRSTHARPFATRHCTAPEQAQGRSRCSGLCLSQSFFC
SARPRHLAYQIFRTVLLKSKAHHPRSVRRHNPGGATRPTTLLWLKLKLKM
ASNTALHCRLYDSTRQAIREASALGRQQEADLLQQTLDRLWKEAHDEGGG
NQPRSGRSSGTPCHQQDEHDAEKVPISAHASGNGGAGGESSDATGVGRRR
EDECLGLLAEAFADDLDVLRKDSTFTGSSKNIAAMADMMRCLASGMDSTE
QTMLLENATR*

mRNA from alignment at L-elsbetiae_contig4958:8062..10521+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig4958.12927.1 ID=mRNA_L-elsbetiae_contig4958.12927.1|Name=mRNA_L-elsbetiae_contig4958.12927.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2460bp|location=Sequence derived from alignment at L-elsbetiae_contig4958:8062..10521+ (Laminarionema elsbetiae ELsaHSoW15)
TCGAAATGAGAAAATCGGTGGGGGGTGGGTTGGGCCGCATGCAGACACGA
AGCACCCATGCTCGACCATTTGCGACCCGGCACTGCACGGCACCAGAGCA
GGCACAAGGACGTTCACGCTGCAGTGGCTTGTGTCTGTCCCAAAGTTTTT
TTTGTTCTGCACGCCCACGACATCTCGCCTACCAAATATTTCGGACGGTG
CTGCTGAAATCCAAGGCACACCACCCACGCTCCGTCAGGAGACACAACCC
AGGAGGAGCTACCAGGCCAACGACTTTGCTTTGGCTAAAACTCAAACTCA
AGATGGCGAGCAATACTGCGCTACACTGCCGGCTGTATGACTCTACACGG
CAAGCAATCAGGGAGGCTTCGGCCTTGGGGCGACAACAAGAAGCAGACCT
GCTGCAGCAGACATTGGATCGCTTGTGGAAAGAGGCTCATGATGAAGGCG
GCGGGAATCAGCCGCGCAGCGGAAGGAGTAGCGGTACGCCGTGCCATCAA
CAGGACGAACATGATGCAGAGAAAGTGCCGATATCTGCTCATGCTAGTGG
AAACGGTGGTGCAGGCGGCGAATCTAGTGATGCTACCGGTGTTGGAAGGC
GACGAGAGGACGAGTGTCTGGGCCTGTTGGCGGAGGCGTTTGCGGACGAT
CTCGACGTTTTGCGGAAGGACTCGACCTTCACAGGTTCATCGAAGAACAT
CGCCGCCATGGCGGACATGATGCGGTGAGAAAAGAGATGGTTCCACCGAG
AAGAAAAGCCAAAGCGGGGCCTTGCTGCAATCGTGCATTGCTGTTCGAAG
ACGGATGACAGGGGCTAATATGCCGGTGCACAGTTTGTCGATGTCCTAGA
TAACTACTGCTGGTCTACATTTTTTTGCATGGTGTGTCAGTGGAAGTCCG
CTCTAGCTCTTGTGTCGTGTTTGCGCCACTCGTATGACCACGTGTCTCGA
ACTAGGCAGTGTGGTGAGTTGGTGTGATATAGGTGGGAGTTTTTAATTTT
CGGCGCAGATGTGGCGTCCGCAGAGAGGCAACAGAATAGTCTAGTCTTCG
CATTCTTGCTAAAGAACGGGGAGCTTTATGTAGCTCCCTGACACACCCCG
AGTGACTAGCAAGGTGGAGCGTGCGATGCCGCACCGCCGCCAACACACGA
GCCACCATGCTGCCTGTCGCCCACGGTCGCACGCTGGGAATGCTGAAACC
TCCAACTACCGCAGGCAAAAGTTGCTGCGGCCCGTTGCTTTCACCTCTCG
CGACTGAGGTACCTGAACATGCGTAGGTGTACATTTACCTAGCCCTCCTG
GTCGGCGAAACCTAGAGAGCTCACGGTAGTAGATGCGCGTCTTTTCAGGT
TGCGAAGACGTGTAAGGCCGTTAACCAACCGGGCAGACACCGAGAACCCC
CCCCCCCCTGTCCCCTTGCTTACCAGCCTGTGTACTATGTCGAATTGCCT
TGTTTGCCTTACCTTTGCCTTGCCTTGCCTAATTTTTGTCTACAGCAATA
GAGATATCTGATGAGAGCTCTTCCTTTGTTTTCCGCCGGGTGGGTGTTTG
ATTTTCCGCGTCGGTTCTTGGGGAAGCTGTCTGGCGAGCGGAATGGACAG
CACAGAACAAACGATGCTTTTGGAGAACGCCACAAGATGACGGCATCACA
GCGGCGGCGAGAACGCACTTCATCGGTTCCTTTGGTTGGAAGAGACCTGG
TCTGGGTCGAGCGGAAGAGTGCGAGGGCGGATGGTAACCCGTGCGCTTGT
TCCGTGCGTCTGCACGCTCGTTCAAGCGTAGCGGTAACGCGGCGCCATTT
CGACTCGCAGGCGTCGACTTCTTTTGATCAGACCAGAAGCTGCTTCCCTG
TTTTTGGCAGAAACTTGTTTGGGCTTGGAGGGGGTGACGTCACGTGCGTG
CAGAGCAGAGAACATGCATATGTATGTATGTGGCTGGCTGTTTTTATTTG
ATTTGCTGAATGGATATTGGATAAAGTGTGGAGATTTTCTTCCAACACAG
ATCTCCCACAATCAACGGTCGCCTGCCCGGTTTGTGTTGAGAAACCTGTG
GATCCCTGCGCGGAACGCGGGCAGCAGTGGTAGGTACCTGGCTCTACGGG
TGTGTGCGTACTGCTGTGTGTGTCAAATCACATTACTCTGGGTTGGGGTA
AAAACAGTTTCTCATGTCGAGATGGCGCACACCCGTTACCATTTCGCCGG
ATAGTCGGTGCTGGTTTTCGTACGTGTGGAGCAAGGAATGTACGGTGAAG
TAACAACCGTTGTGCAACAATATTCGTACCGGGATGGTCTATCCAGCACC
GTCGCTCCATTCTACTCATCGTGCTGAAGTTTGGTTGAAAGTGTTGCGGG
TCCGTTCGTCCTTTGCGGCGAACTCAAGAAGAGAGCCAGTGTGTACCGTC
GCTCCCCGTATTTTCGTATTTTCGGTATGCCGTGTTTGTTGCCGAACATA
CATCGGTGTT

Coding sequence (CDS) from alignment at L-elsbetiae_contig4958:8062..10521+

>mRNA_L-elsbetiae_contig4958.12927.1 ID=mRNA_L-elsbetiae_contig4958.12927.1|Name=mRNA_L-elsbetiae_contig4958.12927.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1566bp|location=Sequence derived from alignment at L-elsbetiae_contig4958:8062..10521+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGAAAATCGGTGGGGGGTGGGTTGGGCCGCATGCAGACACGAAGCAC
CCATGCTCGACCATTTGCGACCCGGCACTGCACGGCACCAGAGCAGGCAC
AAGGACGTTCACGCTGCAGTGGCTTGTGTCTGTCCCAAAGTTTTTTTTGT
TCTGCACGCCCACGACATCTCGCCTACCAAATATTTCGGACGGTGCTGCT
GAAATCCAAGGCACACCACCCACGCTCCGTCAGGAGACACAACCCAGGAG
GAGCTACCAGGCCAACGACTTTGCTTTGGCTAAAACTCAAACTCAAGATG
GCGAGCAATACTGCGCTACACTGCCGGCTGTATGACTCTACACGGCAAGC
AATCAGGGAGGCTTCGGCCTTGGGGCGACAACAAGAAGCAGACCTGCTGC
AGCAGACATTGGATCGCTTGTGGAAAGAGGCTCATGATGAAGGCGGCGGG
AATCAGCCGCGCAGCGGAAGGAGTAGCGGTACGCCGTGCCATCAACAGGA
CGAACATGATGCAGAGAAAGTGCCGATATCTGCTCATGCTAGTGGAAACG
GTGGTGCAGGCGGCGAATCTAGTGATGCTACCGGTGTTGGAAGGCGACGA
GAGGACGAGTGTCTGGGCCTGTTGGCGGAGGCGTTTGCGGACGATCTCGA
CGTTTTGCGGAAGGACTCGACCTTCACAGGTTCATCGAAGAACATCGCCG
CCATGGCGGACATGATGCGATGAGAAAATCGGTGGGGGGTGGGTTGGGCC
GCATGCAGACACGAAGCACCCATGCTCGACCATTTGCGACCCGGCACTGC
ACGGCACCAGAGCAGGCACAAGGACGTTCACGCTGCAGTGGCTTGTGTCT
GTCCCAAAGTTTTTTTTGTTCTGCACGCCCACGACATCTCGCCTACCAAA
TATTTCGGACGGTGCTGCTGAAATCCAAGGCACACCACCCACGCTCCGTC
AGGAGACACAACCCAGGAGGAGCTACCAGGCCAACGACTTTGCTTTGGCT
AAAACTCAAACTCAAGATGGCGAGCAATACTGCGCTACACTGCCGGCTGT
ATGACTCTACACGGCAAGCAATCAGGGAGGCTTCGGCCTTGGGGCGACAA
CAAGAAGCAGACCTGCTGCAGCAGACATTGGATCGCTTGTGGAAAGAGGC
TCATGATGAAGGCGGCGGGAATCAGCCGCGCAGCGGAAGGAGTAGCGGTA
CGCCGTGCCATCAACAGGACGAACATGATGCAGAGAAAGTGCCGATATCT
GCTCATGCTAGTGGAAACGGTGGTGCAGGCGGCGAATCTAGTGATGCTAC
CGGTGTTGGAAGGCGACGAGAGGACGAGTGTCTGGGCCTGTTGGCGGAGG
CGTTTGCGGACGATCTCGACGTTTTGCGGAAGGACTCGACCTTCACAGGT
TCATCGAAGAACATCGCCGCCATGGCGGACATGATGCGCTGTCTGGCGAG
CGGAATGGACAGCACAGAACAAACGATGCTTTTGGAGAACGCCACAAGAT
GACTGTCTGGCGAGCGGAATGGACAGCACAGAACAAACGATGCTTTTGGA
GAACGCCACAAGATGA