mRNA_L-elsbetiae_contig11407.1231.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11407.1231.1
Unique NamemRNA_L-elsbetiae_contig11407.1231.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig11407.1231.1 vs. uniprot
Match: A0A6H5KYW9_9PHAE (CULLIN_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYW9_9PHAE)

HSP 1 Score: 277 bits (708), Expect = 1.100e-86
Identity = 141/148 (95.27%), Postives = 143/148 (96.62%), Query Frame = 1
Query:    1 LFQAENALEAEKLRVANYLNPSTEAKLLRVCDDEMLAKREKILLEKEGSGCKVLLANDKSDDLSRMYRLFNRLPKGLEPMAEIIKDHITEMGTAIIKRREAKIEGGEKDTNQDPNFVKELLALHDKYMGVVNDQFAGNSLLQKALKEA 444
            + +AENALEAEKLRVANYLNPSTEAKLLRVCDDEML KREKILLEKEGSGCKVLLANDKSDDLSRMYRLFNRLPKGLEPMAEIIKDHITEMG  IIKRREAKIEGGEKDTNQDPNFVKELLALHDKYM VVNDQFAGNSLLQKALKEA
Sbjct:  230 MIKAENALEAEKLRVANYLNPSTEAKLLRVCDDEMLEKREKILLEKEGSGCKVLLANDKSDDLSRMYRLFNRLPKGLEPMAEIIKDHITEMGNEIIKRREAKIEGGEKDTNQDPNFVKELLALHDKYMAVVNDQFAGNSLLQKALKEA 377          
BLAST of mRNA_L-elsbetiae_contig11407.1231.1 vs. uniprot
Match: A0A835YLK2_9STRA (Cullin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLK2_9STRA)

HSP 1 Score: 209 bits (532), Expect = 5.330e-61
Identity = 103/148 (69.59%), Postives = 124/148 (83.78%), Query Frame = 1
Query:    1 LFQAENALEAEKLRVANYLNPSTEAKLLRVCDDEMLAKREKILLEKEGSGCKVLLANDKSDDLSRMYRLFNRLPKGLEPMAEIIKDHITEMGTAIIKRREAKIEGGEKDTNQDPNFVKELLALHDKYMGVVNDQFAGNSLLQKALKEA 444
            L +AE AL+ E+ RV +YLN +TE KLLRVCD EML K +  LLEKEGSGC+VLLANDKS+DLSRM+RLF+R+P+GL+PMA I+++HIT  G  +I RRE +IEGGEKD+NQDP  VKELLALHDKYM VV +QF GNSLLQKALK+A
Sbjct:  232 LIKAEAALDCERARVGHYLNAATEPKLLRVCDREMLEKHQTELLEKEGSGCRVLLANDKSEDLSRMFRLFSRIPQGLQPMANIVREHITAAGNDVIVRREERIEGGEKDSNQDPTVVKELLALHDKYMAVVTEQFGGNSLLQKALKDA 379          
BLAST of mRNA_L-elsbetiae_contig11407.1231.1 vs. uniprot
Match: A0A7S3JSF7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JSF7_9STRA)

HSP 1 Score: 205 bits (522), Expect = 1.720e-59
Identity = 103/148 (69.59%), Postives = 122/148 (82.43%), Query Frame = 1
Query:    1 LFQAENALEAEKLRVANYLNPSTEAKLLRVCDDEMLAKREKILLEKEGSGCKVLLANDKSDDLSRMYRLFNRLPKGLEPMAEIIKDHITEMGTAIIKRREAKIEGGEKDTNQDPNFVKELLALHDKYMGVVNDQFAGNSLLQKALKEA 444
            L +AE ALEAEK RVANYLN S+E KLLRVC+ E+L KRE  LLEK+GSGC+ LLAND+++DL+RM+RLF+R+P GL PMA ++K HI  MGT II RRE ++E GEKDTNQDP  VKELLALHDKY+ VV  QF+GNSL QKALKEA
Sbjct:  228 LEKAEKALEAEKQRVANYLNSSSEPKLLRVCESELLEKRETSLLEKDGSGCRALLANDRANDLARMFRLFSRVPNGLPPMAALVKAHIEAMGTDIISRREQRLENGEKDTNQDPALVKELLALHDKYLAVVAQQFSGNSLFQKALKEA 375          
BLAST of mRNA_L-elsbetiae_contig11407.1231.1 vs. uniprot
Match: A0A7S3UPV7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UPV7_HETAK)

HSP 1 Score: 194 bits (492), Expect = 1.720e-59
Identity = 99/149 (66.44%), Postives = 117/149 (78.52%), Query Frame = 1
Query:    1 LFQAENALEAEKLRVANYLNPSTEAKLLRVCDDEMLAKREKILLEKEGSGCKVLLANDKSDDLSRMYRLFNRLPKGLEPMAEIIKDHITEMGTAIIKRREAKIEGGEKDTNQ-DPNFVKELLALHDKYMGVVNDQFAGNSLLQKALKEA 444
            + +AE ALE E+ RVANYLNPSTEAKLLRV D E+L KRE +LLEKEGSGC+ LLANDK++DL+RMYRLF+R+P GL PMA I +  +   G  +I RREAK+  GE+D    DP +VKELLALHDKYM VV +QF GNSL QKALKEA
Sbjct:   40 MVKAERALEEERQRVANYLNPSTEAKLLRVVDQELLEKRESVLLEKEGSGCRALLANDKAEDLARMYRLFSRVPDGLAPMAAIAQQFVESRGVEVIARREAKLGSGERDPGGGDPAYVKELLALHDKYMAVVTEQFGGNSLFQKALKEA 188          
BLAST of mRNA_L-elsbetiae_contig11407.1231.1 vs. uniprot
Match: F0XVV7_AURAN (CULLIN_2 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVV7_AURAN)

HSP 1 Score: 204 bits (519), Expect = 3.880e-59
Identity = 102/148 (68.92%), Postives = 123/148 (83.11%), Query Frame = 1
Query:    1 LFQAENALEAEKLRVANYLNPSTEAKLLRVCDDEMLAKREKILLEKEGSGCKVLLANDKSDDLSRMYRLFNRLPKGLEPMAEIIKDHITEMGTAIIKRREAKIEGGEKDTNQDPNFVKELLALHDKYMGVVNDQFAGNSLLQKALKEA 444
            L +AE AL+AEK RVA+YLN ++E KLLRVC+ E+L  RE +LLEKEGSGC+ LLANDK+ DLSRMYRLF+R+P GL PMA +++ HI  MG  +I RREA++E GEKD+NQDP FVKELLALHDKYM VV+ QFAGN+L QKALKEA
Sbjct:  228 LAKAEVALDAEKARVAHYLNSASEPKLLRVCEHEILELRETVLLEKEGSGCRALLANDKAADLSRMYRLFSRVPNGLPPMAALVRAHIEAMGNEVINRREARLEAGEKDSNQDPAFVKELLALHDKYMAVVSAQFAGNALFQKALKEA 375          
BLAST of mRNA_L-elsbetiae_contig11407.1231.1 vs. uniprot
Match: D7FJN2_ECTSI (CULLIN_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN2_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 2.360e-56
Identity = 99/111 (89.19%), Postives = 99/111 (89.19%), Query Frame = 1
Query:  103 MLAKREKILLEKEGSGCKVLLANDKSDDLSRMYRLFNRLPKGLEPMAEIIKDHITEMGTAIIKRREAKIEGGEKDTNQDPNFVKELLALHDKYMGVVNDQFAGNSLLQKAL 435
            ML KREKILLEK GSGCKVLLANDKSDDLSR YRLFNRLPKGLEPMAEIIKDHITEM   IIKR  AKIEGGEKD NQDPNFVKELLALH KYM VVNDQF GNSLLQKAL
Sbjct:    1 MLEKREKILLEKAGSGCKVLLANDKSDDLSRTYRLFNRLPKGLEPMAEIIKDHITEMRNEIIKRPGAKIEGGEKDINQDPNFVKELLALHGKYMAVVNDQFVGNSLLQKAL 111          
BLAST of mRNA_L-elsbetiae_contig11407.1231.1 vs. uniprot
Match: A0A7R9ZBG0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZBG0_9STRA)

HSP 1 Score: 194 bits (492), Expect = 2.770e-56
Identity = 93/148 (62.84%), Postives = 122/148 (82.43%), Query Frame = 1
Query:    1 LFQAENALEAEKLRVANYLNPSTEAKLLRVCDDEMLAKREKILLEKEGSGCKVLLANDKSDDLSRMYRLFNRLPKGLEPMAEIIKDHITEMGTAIIKRREAKIEGGEKDTNQDPNFVKELLALHDKYMGVVNDQFAGNSLLQKALKEA 444
            L +AE AL  EK RVA+YLNP++E+KLLRVC++E+L K E +LLEKEGSGC+VLLANDKS+DL RM+ LF+RL KGL PMA+I++  I+ MG   IK+R+A+++GGEKD N DP FVK L+ALH+KY+GV+   F+G+SL QKALK+A
Sbjct:  268 LIKAERALIEEKNRVADYLNPASESKLLRVCEEEILEKVEMVLLEKEGSGCRVLLANDKSEDLRRMFHLFSRLDKGLNPMADIVEKFISSMGNECIKKRQARLDGGEKDKNDDPKFVKSLIALHEKYLGVIKTDFSGHSLFQKALKDA 415          
BLAST of mRNA_L-elsbetiae_contig11407.1231.1 vs. uniprot
Match: A0A7S4ILC2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4ILC2_9STRA)

HSP 1 Score: 194 bits (492), Expect = 2.720e-55
Identity = 93/148 (62.84%), Postives = 122/148 (82.43%), Query Frame = 1
Query:    1 LFQAENALEAEKLRVANYLNPSTEAKLLRVCDDEMLAKREKILLEKEGSGCKVLLANDKSDDLSRMYRLFNRLPKGLEPMAEIIKDHITEMGTAIIKRREAKIEGGEKDTNQDPNFVKELLALHDKYMGVVNDQFAGNSLLQKALKEA 444
            L +AE AL  EK RVA+YLNP++E+KLLRVC++E+L K E +LLEKEGSGC+VLLANDKS+DL RM+ LF+RL KGL PMA+I++  I+ MG   IK+R+A+++GGEKD N DP FVK L+ALH+KY+GV+   F+G+SL QKALK+A
Sbjct:  234 LIKAERALIEEKNRVADYLNPASESKLLRVCEEEILEKVEMVLLEKEGSGCRVLLANDKSEDLRRMFHLFSRLDKGLNPMADIVEKFISSMGNECIKKRQARLDGGEKDKNDDPKFVKSLIALHEKYLGVIKTDFSGHSLFQKALKDA 381          
BLAST of mRNA_L-elsbetiae_contig11407.1231.1 vs. uniprot
Match: A0A7S3ZYF8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZYF8_9STRA)

HSP 1 Score: 188 bits (478), Expect = 5.740e-55
Identity = 97/152 (63.82%), Postives = 119/152 (78.29%), Query Frame = 1
Query:    1 LFQAENALEAEKLRVANYLNPSTEAKLLRVCDDEMLAKREKILLEKEGSGCKVLLANDKSDDLSRMYRLFNRLPK----GLEPMAEIIKDHITEMGTAIIKRREAKIEGGEKDTNQDPNFVKELLALHDKYMGVVNDQFAGNSLLQKALKEA 444
            L +AE ALEAE  RVA+YLN ++E KLLRVC+ E+L  RE +LLEKEGSGC+ LLAND+  DL+RMYRLF R+P     GL PMA +++ HI +MG  II RREA++  G KD+NQDP FVKELLALHDKY+ VV++QF GN+L QKALKEA
Sbjct:  228 LAKAEVALEAEAARVAHYLNGASEPKLLRVCEHEILELRETVLLEKEGSGCRALLANDRKADLARMYRLFGRVPNTPTHGLPPMAALVRAHIEQMGNDIIDRREARLSEGAKDSNQDPAFVKELLALHDKYLAVVSEQFGGNALFQKALKEA 379          
BLAST of mRNA_L-elsbetiae_contig11407.1231.1 vs. uniprot
Match: A0A4D9DID3_9STRA (CULLIN_2 domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DID3_9STRA)

HSP 1 Score: 189 bits (479), Expect = 2.230e-53
Identity = 98/149 (65.77%), Postives = 118/149 (79.19%), Query Frame = 1
Query:    1 LFQAENALEAEKLRVANYLNPSTEAKLLRVCDDEMLAKREKILLEKEGSGCKVLLANDKSDDLSRMYRLFNRLPKGLEPMAEIIKDHITEMGTAIIKRREAKI-EGGEKDTNQDPNFVKELLALHDKYMGVVNDQFAGNSLLQKALKEA 444
            L +AE ALE EK RVANYLN  TE KLL+V  +E+L K+E  LLE+EGSGC +LL NDK +DLSRMYRLF+R+P GL PMA+I++ HI  MG  +I +REA++ E GEKDTNQDPNFVK LL+LHDK++GVVN QF  NSL  KALKEA
Sbjct:  231 LLKAEAALEEEKARVANYLNAETEEKLLKVVIEELLEKQETTLLEREGSGCAMLLTNDKYEDLSRMYRLFSRVPSGLLPMAKIVQAHIERMGNEVINQREARMHEEGEKDTNQDPNFVKALLSLHDKFVGVVNAQFEKNSLFHKALKEA 379          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11407.1231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYW9_9PHAE1.100e-8695.27CULLIN_2 domain-containing protein n=2 Tax=Ectocar... [more]
A0A835YLK2_9STRA5.330e-6169.59Cullin n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A7S3JSF7_9STRA1.720e-5969.59Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3UPV7_HETAK1.720e-5966.44Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
F0XVV7_AURAN3.880e-5968.92CULLIN_2 domain-containing protein n=1 Tax=Aureoco... [more]
D7FJN2_ECTSI2.360e-5689.19CULLIN_2 domain-containing protein n=1 Tax=Ectocar... [more]
A0A7R9ZBG0_9STRA2.770e-5662.84Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S4ILC2_9STRA2.720e-5562.84Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S3ZYF8_9STRA5.740e-5563.82Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A4D9DID3_9STRA2.230e-5365.77CULLIN_2 domain-containing protein n=3 Tax=Monodop... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11407contigL-elsbetiae_contig11407:438..2921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score278.1
Seed ortholog evalue2.4e-72
Seed eggNOG ortholog2880.D7FY17
KEGG koko:K03347
KEGG Pathwayko04110,ko04111,ko04114,ko04120,ko04141,ko04310,ko04340,ko04341,ko04350,ko04710,ko05168,ko05200,map04110,map04111,map04114,map04120,map04141,map04310,map04340,map04341,map04350,map04710,map05168,map05200
KEGG ModuleM00379,M00380,M00381,M00382,M00387,M00407,M00411
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin protein ligase binding
EggNOG OGsCOG5647@1,KOG2166@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04121
Exons3
Model size445
Cds size444
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11407.1231.1prot_L-elsbetiae_contig11407.1231.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11407 438..2920 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815348.6310306-CDS-L-elsbetiae_contig11407:437..5531622815348.6310306-CDS-L-elsbetiae_contig11407:437..553Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11407 438..553 +
1691682853.7985425-CDS-L-elsbetiae_contig11407:437..5531691682853.7985425-CDS-L-elsbetiae_contig11407:437..553Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11407 438..553 +
1622815348.6408994-CDS-L-elsbetiae_contig11407:1515..16691622815348.6408994-CDS-L-elsbetiae_contig11407:1515..1669Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11407 1516..1669 +
1691682853.808546-CDS-L-elsbetiae_contig11407:1515..16691691682853.808546-CDS-L-elsbetiae_contig11407:1515..1669Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11407 1516..1669 +
1622815348.6522677-CDS-L-elsbetiae_contig11407:2746..29201622815348.6522677-CDS-L-elsbetiae_contig11407:2746..2920Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11407 2747..2920 +
1691682853.816206-CDS-L-elsbetiae_contig11407:2746..29201691682853.816206-CDS-L-elsbetiae_contig11407:2746..2920Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11407 2747..2920 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11407.1231.1

>prot_L-elsbetiae_contig11407.1231.1 ID=prot_L-elsbetiae_contig11407.1231.1|Name=mRNA_L-elsbetiae_contig11407.1231.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=148bp
LFQAENALEAEKLRVANYLNPSTEAKLLRVCDDEMLAKREKILLEKEGSG
CKVLLANDKSDDLSRMYRLFNRLPKGLEPMAEIIKDHITEMGTAIIKRRE
AKIEGGEKDTNQDPNFVKELLALHDKYMGVVNDQFAGNSLLQKALKEA
back to top

mRNA from alignment at L-elsbetiae_contig11407:438..2921+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11407.1231.1 ID=mRNA_L-elsbetiae_contig11407.1231.1|Name=mRNA_L-elsbetiae_contig11407.1231.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2484bp|location=Sequence derived from alignment at L-elsbetiae_contig11407:438..2921+ (Laminarionema elsbetiae ELsaHSoW15)
CTTTTTCAGGCGGAGAACGCGCTGGAGGCGGAGAAGCTCCGCGTGGCGAA CTACCTGAACCCTTCCACCGAGGCGAAGCTCCTGCGGGTCTGCGACGACG AGATGCTCGCCAAGAGGTGAGGGACGAGCAGCAGCCTTCGCGGGTTGTAC TGGAAGAAATCATACGGGATATAGTGTGGACGCGGCTATAGTATATAGGA ATGGGGGGGGTTGGTTTGGGGTTGGAGTTACGGTTACGGTTGGGTTTACG GTCACGGAACCCGTCTGTTGTGTCATTATTTGCTGTGTAGACAGGATTTC TTCGCGAAGATCTAAGCGATGAGATGGGGATGCACACGCACGCACTTCAA CGTTGTTGCACGCCCACCCCAGGCCATAGCACGCGCACGTCTCGATGGGT GGGAACATGAGAGGACACCACACGAGTTTTGTAGTGAAGAACACAAGAGT AAATAGTCAGTTTCAGGGAGCGCACCGACTATGGCAGTGCACCATCAAGC GTAGAACAGCGCAGCACACGCACAAAAAAAAGCACGCGCGGTATGTAGCT CCTGGACCCTGCCCCCCCCCTCCACTCTCGCTGTAGCGGATCGAGTATCT GAACCCCTTGTTGAGGGAGCAGTTTCGCCTATGTGCGGACGACATACACA CACACAAACATCAACAAGAATAATATCGTTTCCAGATGCATGCTGCTGCT GCTACTGCTGCGTTCATTTGGTCGCCCCCCCCCCCCTCTTGCAAGGTCCC ATTTACCGAACAAGGCAGGACTGTCGAAAAGGCCTCCATGTATCTACCAA ACTCATGAGAAGAGTCACCACATGAGGATTGCTCTGTGTGTGCATATGTG TGCGTGTTGCACTGCTATGTATGCAAGTACCTACACCACAATTCGCTGTC GTTCTACGTAAATACAGCGTTCTCCGTAGATGCGAGTGTACGTGCGTGCG CAAACGTGACGTATCAGCCGGGGGTCGTCACACGGGAGGGGGTTGGGGGG CTTTAATATTGAACACCGGGGGGCTCGTTTCCTTCTCTTTTTTTTTTTTT TCTTTTTTTTTTCTCGCTTGGCGCCCAGGGAAAAAATCCTGCTCGAGAAG GAAGGCAGCGGCTGCAAGGTGCTCCTGGCGAACGACAAGTCGGATGACCT CAGCCGGATGTACCGCCTGTTCAACCGCCTGCCCAAGGGGCTGGAGCCCA TGGCGGAGATCATCAAGGACCACATCACGGAGGTGAGGCGAACCAGACGG CAGAGCATCGCGCGGAGTGATCTGATCCGCTTTGCTTAATTTTTTGCTGA CGAGCTTGTCGTCCGGGGACTTGAGTACTGGAGGATACATTCAGTACAAG CGCGGACGGGCTATTTATCGGGTGGAGTAGTAGCCCGTGGGACTTGGAGT AACACATATGTTTTTTCGTGTTTTCAGGACCTCCGGTTTTGATGCTTGTA TGTGTTTATCAGCGCCGCAGCGAGTCTCACGTCTCTGTCGGTTGGCCGAG GCGTTTATGAAACCGCCGCAGAATCTCTACAAAACCTGCCTTATCCGTTC CGTTTCCGCGGTGACGTAAAGCTTTGGACGGAAGCCCGGTTTGGACGTTG CAGTAAGGTGTCCAACCATCCCCTTATTTTCTAAGCTGGTATGTACCTAC AAAACTACAGTAGTGGGGCGAGGCGCTTTGTAATTTTCATGGTGGTTAAA GTCTGCGCGCGCCCCTGTCGAGGAAGACTTCTTCGAGGAGAGGTTTGAAG CGCCGAAACGCGGTGTGCGAGCAAGGGAGTGGATGATTCTCGCTCTCTAT CTTGTGTCGGTTCACGTTATTGTACCGCTGCCTGGTTATCGGGCCTCACC TCCCCCCCCCCTTGTCTGTCTCTGTCTCTGTCTCTGGTCCGTCGTCTGCC TTTTGTCTCCTATCCTTCGCGCTGCCTCTCTCTCTCTGTCTCTATCTCTC TTTCTCTGTGACTCTGGCCTTTGTCTGTCTTTGTCTCCCTCTCTCTCCCT CTCCATCTCCCTCTCCCTCTCCCTCTCCCTCTCTCCCTCTCTCTCTCTCT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCTTTTTTTTT TCTTTTTTTTTTTGCTCTTTCCCCGGCGGCCGCGCCCACCAAACGGGGGC GGGGNNNNNNNNNNGTTTTTGTCTCCCCCCCCCCCCCCCTCCCTCCCCCC CCCCCTCCCCCCCTCCCTCGTCCCCCCCTCTCCCCCCCCCCCCCCCCCCC CCTCTCTCTCTCCGTCCCTCCCTCCTTGTCTGTTATATCTCTTGTCTGGT CTCTTCCAGATGGGCACCGCGATCATCAAGCGGCGGGAGGCGAAGATCGA GGGCGGCGAGAAGGACACCAACCAGGACCCGAACTTCGTGAAGGAGCTGC TCGCCCTGCACGACAAGTACATGGGCGTCGTCAACGACCAGTTCGCGGGG AACTCGCTGCTCCAGAAGGCGCTCAAGGAGGCGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig11407:438..2921+

>mRNA_L-elsbetiae_contig11407.1231.1 ID=mRNA_L-elsbetiae_contig11407.1231.1|Name=mRNA_L-elsbetiae_contig11407.1231.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=888bp|location=Sequence derived from alignment at L-elsbetiae_contig11407:438..2921+ (Laminarionema elsbetiae ELsaHSoW15)
CTTTTTCAGGCGGAGAACGCGCTGGAGGCGGAGAAGCTCCGCGTGGCGAA
CTACCTGAACCCTTCCACCGAGGCGAAGCTCCTGCGGGTCTGCGACGACG
AGATGCTCGCCAAGAGCTTTTTCAGGCGGAGAACGCGCTGGAGGCGGAGA
AGCTCCGCGTGGCGAACTACCTGAACCCTTCCACCGAGGCGAAGCTCCTG
CGGGTCTGCGACGACGAGATGCTCGCCAAGAGGGAAAAAATCCTGCTCGA
GAAGGAAGGCAGCGGCTGCAAGGTGCTCCTGGCGAACGACAAGTCGGATG
ACCTCAGCCGGATGTACCGCCTGTTCAACCGCCTGCCCAAGGGGCTGGAG
CCCATGGCGGAGATCATCAAGGACCACATCACGGAGGGAAAAAATCCTGC
TCGAGAAGGAAGGCAGCGGCTGCAAGGTGCTCCTGGCGAACGACAAGTCG
GATGACCTCAGCCGGATGTACCGCCTGTTCAACCGCCTGCCCAAGGGGCT
GGAGCCCATGGCGGAGATCATCAAGGACCACATCACGGAGATGGGCACCG
CGATCATCAAGCGGCGGGAGGCGAAGATCGAGGGCGGCGAGAAGGACACC
AACCAGGACCCGAACTTCGTGAAGGAGCTGCTCGCCCTGCACGACAAGTA
CATGGGCGTCGTCAACGACCAGTTCGCGGGGAACTCGCTGCTCCAGAAGG
CGCTCAAGGAGGCGATGGGCACCGCGATCATCAAGCGGCGGGAGGCGAAG
ATCGAGGGCGGCGAGAAGGACACCAACCAGGACCCGAACTTCGTGAAGGA
GCTGCTCGCCCTGCACGACAAGTACATGGGCGTCGTCAACGACCAGTTCG
CGGGGAACTCGCTGCTCCAGAAGGCGCTCAAGGAGGCG
back to top