mRNA_L-elsbetiae_contig10063.108.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10063.108.1
Unique NamemRNA_L-elsbetiae_contig10063.108.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig10063.108.1 vs. uniprot
Match: D7G3D3_ECTSI (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D3_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 5.270e-50
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 1 
Query:    1 RGLRESSGGSRVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFGRSDHTGHPVYFHRTAPGGCCDCGDEEAWAEDGCCDRHR 243
            R LRE SGGSRVCGYVFKRGDIAWNCRKCQVDSTCVQCDACF RSDHTGHPVYFHRTAPGGCCDCGDEEAWAE+GCC RHR
Sbjct:   79 RSLREMSGGSRVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFRRSDHTGHPVYFHRTAPGGCCDCGDEEAWAEEGCCSRHR 159
[Close]
BLAST of mRNA_L-elsbetiae_contig10063.108.1 vs. uniprot
Match: A0A7S2LKQ2_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LKQ2_9STRA)

HSP 1 Score: 135 bits (341), Expect = 3.610e-39
Identity = 56/71 (78.87%), Postives = 59/71 (83.10%), Query Frame = 1 
Query:   31 RVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFGRSDHTGHPVYFHRTAPGGCCDCGDEEAWAEDGCCDRHR 243
            R CGYVFKRGD+AWNCR CQ DSTCV CDACF  SDHTGH V FH+T+PGGCCDCGD EAWA  GCCD HR
Sbjct:   35 RPCGYVFKRGDMAWNCRTCQTDSTCVLCDACFQASDHTGHEVSFHQTSPGGCCDCGDVEAWAAKGCCDLHR 105
[Close]
BLAST of mRNA_L-elsbetiae_contig10063.108.1 vs. uniprot
Match: A0A7S3P848_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P848_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.240e-38
Identity = 56/71 (78.87%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:   31 RVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFGRSDHTGHPVYFHRTAPGGCCDCGDEEAWAEDGCCDRHR 243
            R CGYVF+RGDIAWNCR CQ D TCV CD CF RSDH GH VYFHRT PGGCCDCGD EAW  DGCCD HR
Sbjct:   51 RPCGYVFQRGDIAWNCRTCQTDPTCVICDDCFRRSDHQGHEVYFHRTTPGGCCDCGDMEAWKIDGCCDVHR 121
[Close]
BLAST of mRNA_L-elsbetiae_contig10063.108.1 vs. uniprot
Match: A0A7S4EF35_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EF35_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.800e-38
Identity = 55/71 (77.46%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:   31 RVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFGRSDHTGHPVYFHRTAPGGCCDCGDEEAWAEDGCCDRHR 243
            R CGYVFKRGDIAWNCR CQ DSTCV CD CF  SDH GH VYFHRT PGGCCDCGD EAW  +GCC  HR
Sbjct:   27 RPCGYVFKRGDIAWNCRTCQTDSTCVICDTCFRSSDHEGHEVYFHRTTPGGCCDCGDAEAWKPEGCCPAHR 97
[Close]
BLAST of mRNA_L-elsbetiae_contig10063.108.1 vs. uniprot
Match: A0A7S4V6U6_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V6U6_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.940e-38
Identity = 54/71 (76.06%), Postives = 58/71 (81.69%), Query Frame = 1 
Query:   31 RVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFGRSDHTGHPVYFHRTAPGGCCDCGDEEAWAEDGCCDRHR 243
            R CGYVF+RGDIAWNCR CQ DSTCV CD CF  SDH GH V+FHRT+PGGCCDCGD EAW  +GCC RHR
Sbjct:   44 RPCGYVFRRGDIAWNCRTCQTDSTCVLCDRCFHESDHEGHEVFFHRTSPGGCCDCGDIEAWKIEGCCPRHR 114
[Close]
BLAST of mRNA_L-elsbetiae_contig10063.108.1 vs. uniprot
Match: A0A1Z5JKC4_FISSO (E3 ubiquitin-protein ligase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JKC4_FISSO)

HSP 1 Score: 139 bits (349), Expect = 2.430e-36
Identity = 56/74 (75.68%), Postives = 60/74 (81.08%), Query Frame = 1 
Query:   22 GGSRVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFGRSDHTGHPVYFHRTAPGGCCDCGDEEAWAEDGCCDRHR 243
            G  R CGYVFKRGDIAWNCR CQ D+TCV CD CF  SDH GH VYFHRT+PGGCCDCGD EAW  +GCCD+HR
Sbjct:  182 GRPRPCGYVFKRGDIAWNCRTCQTDATCVICDTCFRHSDHQGHEVYFHRTSPGGCCDCGDAEAWKSEGCCDKHR 255
[Close]
BLAST of mRNA_L-elsbetiae_contig10063.108.1 vs. uniprot
Match: A0A7S2SCK7_9STRA (E3 ubiquitin-protein ligase (Fragment) n=2 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SCK7_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.240e-35
Identity = 52/71 (73.24%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:   37 CGYVFKRGDIAWNCRKCQVDSTCVQCDACFGRSDHTGHPVYFHRTAPGGCCDCGDEEAWAEDGCCDRHRAP 249
            CGYVFKRGDIAWNCR CQ DSTCV CD CF  S+H GH V+FHRT+PGGCCDCGD EAW  +GCC +H  P
Sbjct:  135 CGYVFKRGDIAWNCRTCQADSTCVLCDECFRNSNHKGHEVFFHRTSPGGCCDCGDTEAWKAEGCCSKHVPP 205
[Close]
BLAST of mRNA_L-elsbetiae_contig10063.108.1 vs. uniprot
Match: A0A7R9YGT1_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YGT1_9STRA)

HSP 1 Score: 135 bits (339), Expect = 5.400e-35
Identity = 54/77 (70.13%), Postives = 61/77 (79.22%), Query Frame = 1 
Query:   13 ESSGGSRVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFGRSDHTGHPVYFHRTAPGGCCDCGDEEAWAEDGCCDRHR 243
            E +   R CGYVF+ GDI WNCR C+ DSTCVQCDACF  SDHTGH V+FH+ +P GCCDCGDEEAWA +GCC RHR
Sbjct:   86 EDANPKRYCGYVFREGDICWNCRTCEKDSTCVQCDACFQLSDHTGHDVFFHKASPNGCCDCGDEEAWAWEGCCPRHR 162
[Close]
BLAST of mRNA_L-elsbetiae_contig10063.108.1 vs. uniprot
Match: A0A6S8VUG7_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8VUG7_9STRA)

HSP 1 Score: 134 bits (338), Expect = 7.420e-35
Identity = 55/71 (77.46%), Postives = 58/71 (81.69%), Query Frame = 1 
Query:   31 RVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFGRSDHTGHPVYFHRTAPGGCCDCGDEEAWAEDGCCDRHR 243
            R CGYVF+RGDIAWNCR CQ DSTCV CDACF  SDH GH VYFHRT+PGGCCDCGD EAW  +GCC  HR
Sbjct:  216 RPCGYVFRRGDIAWNCRTCQYDSTCVLCDACFHASDHEGHEVYFHRTSPGGCCDCGDSEAWRIEGCCPLHR 286
[Close]
BLAST of mRNA_L-elsbetiae_contig10063.108.1 vs. uniprot
Match: A0A7S1Z3G4_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z3G4_9STRA)

HSP 1 Score: 134 bits (336), Expect = 7.960e-35
Identity = 54/71 (76.06%), Postives = 58/71 (81.69%), Query Frame = 1 
Query:   31 RVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFGRSDHTGHPVYFHRTAPGGCCDCGDEEAWAEDGCCDRHR 243
            R CGYVF+RGDIAWNCR CQ DSTCV CD CF  SDH GH V+FHRT+PGGCCDCGD EAW  +GCC RHR
Sbjct:  289 RPCGYVFRRGDIAWNCRTCQTDSTCVLCDRCFHESDHEGHEVFFHRTSPGGCCDCGDIEAWKVEGCCPRHR 359
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10063.108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3D3_ECTSI5.270e-5093.83E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sil... [more]
A0A7S2LKQ2_9STRA3.610e-3978.87E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Lep... [more]
A0A7S3P848_9STRA1.240e-3878.87E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Amp... [more]
A0A7S4EF35_9STRA1.800e-3877.46E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Pse... [more]
A0A7S4V6U6_9STRA1.940e-3876.06E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Dit... [more]
A0A1Z5JKC4_FISSO2.430e-3675.68E3 ubiquitin-protein ligase n=2 Tax=Fistulifera so... [more]
A0A7S2SCK7_9STRA1.240e-3573.24E3 ubiquitin-protein ligase (Fragment) n=2 Tax=Euc... [more]
A0A7R9YGT1_9STRA5.400e-3570.13E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Pin... [more]
A0A6S8VUG7_9STRA7.420e-3577.46E3 ubiquitin-protein ligase n=1 Tax=Chaetoceros de... [more]
A0A7S1Z3G4_9STRA7.960e-3576.06E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Dit... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10063contigL-elsbetiae_contig10063:416..4694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.6
Seed ortholog evalue2.5e-42
Seed eggNOG ortholog2880.D7G3D3
KEGG koko:K10626
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin-dependent protein catabolic process via the N-end rule pathway
EggNOG OGsKOG1140@1,KOG1140@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons3
Model size255
Cds size252
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10063.108.1prot_L-elsbetiae_contig10063.108.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10063 418..4694 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815239.0039532-CDS-L-elsbetiae_contig10063:417..5161622815239.0039532-CDS-L-elsbetiae_contig10063:417..516Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10063 418..516 -
1691682789.2946877-CDS-L-elsbetiae_contig10063:417..5161691682789.2946877-CDS-L-elsbetiae_contig10063:417..516Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10063 418..516 -
1622815239.0190897-CDS-L-elsbetiae_contig10063:1863..19841622815239.0190897-CDS-L-elsbetiae_contig10063:1863..1984Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10063 1864..1984 -
1691682789.3068397-CDS-L-elsbetiae_contig10063:1863..19841691682789.3068397-CDS-L-elsbetiae_contig10063:1863..1984Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10063 1864..1984 -
1622815239.0322306-CDS-L-elsbetiae_contig10063:4662..46941622815239.0322306-CDS-L-elsbetiae_contig10063:4662..4694Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10063 4663..4694 -
1691682789.319125-CDS-L-elsbetiae_contig10063:4662..46941691682789.319125-CDS-L-elsbetiae_contig10063:4662..4694Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10063 4663..4694 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10063.108.1

>prot_L-elsbetiae_contig10063.108.1 ID=prot_L-elsbetiae_contig10063.108.1|Name=mRNA_L-elsbetiae_contig10063.108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
RGLRESSGGSRVCGYVFKRGDIAWNCRKCQVDSTCVQCDACFGRSDHTGH
PVYFHRTAPGGCCDCGDEEAWAEDGCCDRHRAPS
back to top

mRNA from alignment at L-elsbetiae_contig10063:416..4694-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10063.108.1 ID=mRNA_L-elsbetiae_contig10063.108.1|Name=mRNA_L-elsbetiae_contig10063.108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4279bp|location=Sequence derived from alignment at L-elsbetiae_contig10063:416..4694- (Laminarionema elsbetiae ELsaHSoW15)
CGGGGCCTTCGGGAGAGCAGCGGGGGCAGCAGGTATGTAAATACACATGT
ATGTTCGTACACCATATCTGCTATCCACAGGGTAAGTGAATATAATATCA
TGTAAACGAGCGGGCGGGTGGGTGCAGGCGCTTGTTTGCCTGCACGTCTC
TGTTGGTGCCGTCTCCTGTCGGGGCGGAGGGAGGAAGCGCCGTGCACAAG
AAACGCTGTGTATGTATGCTGTCTTCACTTTGAAAACCGTTCCGGTCTCT
CCATCCAGTACCTCTCAATGTCCGTACGAATCCAACACTTGATGCGGTCG
ATTCCCGTGGTCACAGGCTAACTTACACCCAAGAAAAGGTACACGAAAAA
TGAAATGGACCCGAAGGGCCAGCAAAGCGAACAATAAAACAGATATCGAA
TCTGGAGCCCTCCGCTCTACTCTCTTATAATGTACATACTTCGAAGTACA
TACGCACCATTGAGAGACAAGACAGACACCCACCAGTGACACAACCGGAC
GAAACCAGGTGGCGGCCGGCCAGGCACACCTCTTTCGCCCCTTCCACCTG
TCTTCACCGACAACACGCAAACACTCGTTCGGAACTAGCTATAACAAAGA
GACGAAGAACTCTTTTATTATACCCCCGACTACTACTTTTTTCCTGTGTC
GGTGTCGGGGCTCACATGTACACGAGCCAGACAAACCATCTACAGCAGTA
CATGTACATAGTACATAGTACATACACACACACGTGTCCTCTGCTTTCAT
CGCTCTGGGGTGGACGGGCCACCAAACCACCCCTGTCGCGCAGCCATGTA
CAAAAGCACCGATCCCATCTCCAGGGGGCTGCGTGTGAGTGGGGGGCACC
GCAGTTTCGATCGAGGGGGTTGGAGTGGGGCACCAAAGACAGGGGGGATG
CGCTCGCTGACCCTCGGCATTCCTGCAAAGCCTTTCGAGAGACGGACGGA
GCGCGACTGACTGACTACCGCTGTGCGGAGGGAGCTCAAAGGAGCAGGCC
TCTGCTTTTGCAGACTGCCTTCGCGAGGAGATCAACTTCATCTAGGAACT
GCAAGGGGTCACCAGGATTGCAGGGCTGGGGAAGCACACCCCGAAACTTC
ATATGGCCGGATTCGGGGGGGGGGGGGTATACTAAAACCTATATATAAGA
AAGGGGGCCCTCAGCTGGTATTATTAAGGGGGCGCTTTTGCAGACCACCT
TCGCGAAGAAATCAACTTCATCTAGGAAATGCGGGACAGGGGCTACGTAA
CACTAACCCTTACCCTTACCCCAAACCGCGACCCCCTTTCCCGATTTCCT
ATACTTTTTTTTTTTTTTCCCATATGTTAGCTTGAGACAAATTCTGCGTC
TGCGAAGGCTACCGGCTTTTGCCCCAAGCGCGAAGAGGAGAAAGGAGATA
TGTGTGTGTGTGTGTTGGGGGGTTAGGGGCGAGAGGCAGCGTTGTGTCGT
GAATGAGGTTTGGGCGTCGTTCTCCGTCGGTCTACTCTGTTCTCTCATCG
CCCGCCCGCCACCCTCTTCTCTCTCCCCACGTTTCCATTGCACGTGTACC
GTATATACTAGCTATAAACATACGAAACGAATACACGTAGTAGGTGACAC
AAGATACCACACACCCCTGGACAGATCTTCAAAACTCGATTCCCTCCCCC
AGCAAGAAGAGTGCAAGTGCCGAAAGGGGGGTGGCGTTTTGGAAAGATCG
AGTCGAGGGCTGTCCGAAAAATGTGTCGTTTGGTGTTGGCTGGCACCCTC
TTCGTTATGGAGTATTGGGGCTCGAAATTCACTAAAATTCGGTCCAGGGG
GTGTGGTATCTTTCGTCACCTACGGTACTTTCCTTGAATGTTCTAAATAT
TCTTGTTGAGCCTGCTAACACTTAACCGGGGAGCTATCCCTGTATCTGTG
CCCAGGGTAGAGACAGCACACTGAAGAACGAAAAGACATACCGCCGCCGG
TTACTACGCAGCCACCAAGCTTAGCAGGGGATCTATCACTGTACCTGTGC
CCAGGGTAGATAGACACAGCACACGAAATAACGAAATCACATACCGCCGC
CGGTTACTACGCAGCCACCAAGCTTAGCAGGGGACCTATCACTGTACCTG
TGCCCAGGGTAGATAGACACAGCACACGAAAGAACGAAATCACATACCGC
CGCCGGTTACTACGCAGCCACCAAGCTTAGCAGGGGACCTATCACTGTAC
CTGTGCCCAGGGTAGATAGACACAGCACACGGAAGAATGAAATCACATAC
CGCCGCGGTTACTACGCAGCCACCAAGCTTAGCAGGGGACCTATCTCTGT
ACCTGTGCCTAGGGTAGACACAGCACACTGGTAAATAGAACGAAAAAACA
TACATACCACTGCGGTTACTACGCAGCCACCAAGAATGGTGCGCTGCTTC
TTAATCTGCTCCGACCCTCGTTCGAGCGCTGGTAAACGTGTGAGCACCCT
TAAGGAAAGAAAAATAAATACAAATGTTCTAGCGAGGAGTTTTAGCGGCC
CATGTCTGAGCTGTGAAAGCGTAGTTCCCGGAGCTACGGGGTGAGGGTTA
GGGTAACGCTAACCCTCACCCTTCTCACTATCCCGATCTACGGGGCGTGC
TTGTACACGCTACGTGTGGGTATTTTGTAAAGAGGAAGAAAAAAAATCAC
GATGTTGACGAAAGACCCCTCCCCTCCCCTCCCCTCCCCTGCCCTCCCCG
TCAACAAAAGGGTCTGCGGGTACGTGTTCAAGCGCGGGGACATCGCTTGG
AACTGCCGCAAGTGCCAGGTGGACAGCACCTGCGTGCAGTGCGACGCCTG
CTTCGGGCGGTCGGACCACACGGGGCACCCGGTGAGGCTTTATTTTAGTA
TGGTACCATATGTATTTTGCTGGTATGTATTTGATGGTAAATTAAAATGC
ACGTTATGTATCGTAAATATTAGTCAGTAGCATATTGTACCATACTGTGT
TTTTGAATGGAAGATCAGGAAATTAAAAATATGGACCCCCCCCCCCCCCA
CATCAGAGAAGGGACCCCGTGGTATTGGTCCGGCAGAGGGGGGGGAAAAC
GCCAAAAAGTTTGGAAGAGTCTTTTATTTTTCTGTTTTTTCACGCTCCCC
ATCGGCATTGGTGTCGTACCTACCTTGCAGCAAATATGTATGGCTAAAGT
AAAACAAAATAAAACAACACATGCTTATTCGTCGGGGGTTATGTTGTGTG
TTTTTGTTTCATGTTGTTTGTTAGTTGTTCGTACACTCGACCTGCGTCGT
GTCCTGTCCGAGGGTATTCTAGTTTATGTTACATATTTCATTTTCGTACC
CCCTGTTGGTGGGCGGTATAATCGGAGGGGAGAATTATGTAGACCTGTTG
CGGGCCTGGCCGGCGAGAACCCGGCACGGAACCCCCCGGCTTTGTTGGGG
TACCAAGAAGTGGTGGTGTTGATTGTTCCAGTTTTGTTTTACCTCACATA
ACATGTAGAGGGGAGCGAAGGGCTCCAGACTCGATATCTATTATATTATT
GCTTTGCTGGCCCTTCGGGTCCATTTTATTTTTCGTGTATTTTTCTTAGG
TATAAGTTAGCCTGTGACCACGGGAATTGACCGCATCAAGTGTTGGATTA
GTACGGACATTGAGAGGTACTGGATGGAGAGATCGGAACTGTTTTTAATG
TGAAGACAACATACAACAACATACATATGTGTGTTGTAGTGGCTCTACGA
CATTGTGCACATGGTGAGAGCGTGAACCCGGTGTAAGGGCTTTTCATGCT
GCTGCCAGATGTCGTTTTTTTCTGCAAACGGTGTATTCCTCTTAAAAGAG
CCCACCATAACTTTACTGGCAAGATGTCCTCGTGAAAGGGAGAAAGCAGC
CCATCGAGCACTGGAAACAAACGTGAAGAAGAAAAAAAAGTAAAAAACTA
TATATTTACATGGGTTATTCCGACTTTTTTGAAGGAGCTCCTTGTGTGTG
TGGAGTGCTGTATTATATTCCCACACCATACTTTTTAATTAACGTAAAAT
CTACGTCTACAAAAAATAAATAAAAATAGTCCAAGTATGTAGGTATACGT
CCAGTCTGCGAAAAATGTCGTGTTTCATTTGAAGTGTTTGGTCCCTCCCT
CCCGCCCACTCTCTTACATAGAAGTACATATTTATGTTTGTTTGTTTTTT
TCTCCCCCGCCGTCCGTCGTGTGACAAGGTGTACTTCCACCGCACCGCCC
CGGGGGGCTGCTGCGACTGCGGGGATGAGGAGGCCTGGGCCGAGGACGGC
TGCTGCGACCGGCACAGAGCGCCCTCGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig10063:416..4694-

>mRNA_L-elsbetiae_contig10063.108.1 ID=mRNA_L-elsbetiae_contig10063.108.1|Name=mRNA_L-elsbetiae_contig10063.108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig10063:416..4694- (Laminarionema elsbetiae ELsaHSoW15)
CGGGGCCTTCGGGAGAGCAGCGGGGGCAGCAGCGGGGCCTTCGGGAGAGC
AGCGGGGGCAGCAGGGTCTGCGGGTACGTGTTCAAGCGCGGGGACATCGC
TTGGAACTGCCGCAAGTGCCAGGTGGACAGCACCTGCGTGCAGTGCGACG
CCTGCTTCGGGCGGTCGGACCACACGGGGCACCCGGGTCTGCGGGTACGT
GTTCAAGCGCGGGGACATCGCTTGGAACTGCCGCAAGTGCCAGGTGGACA
GCACCTGCGTGCAGTGCGACGCCTGCTTCGGGCGGTCGGACCACACGGGG
CACCCGGTGTACTTCCACCGCACCGCCCCGGGGGGCTGCTGCGACTGCGG
GGATGAGGAGGCCTGGGCCGAGGACGGCTGCTGCGACCGGCACAGAGCGC
CCTCGGTGTACTTCCACCGCACCGCCCCGGGGGGCTGCTGCGACTGCGGG
GATGAGGAGGCCTGGGCCGAGGACGGCTGCTGCGACCGGCACAGAGCGCC
CTCG
back to top