mRNA_L-elsbetiae_contig10060.106.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10060.106.1
Unique NamemRNA_L-elsbetiae_contig10060.106.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10060.106.1 vs. uniprot
Match: D8LBL2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBL2_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 9.720e-55
Identity = 106/161 (65.84%), Postives = 118/161 (73.29%), Query Frame = 1 
Query:  103 APYVLPAPTWSLSDLNVATYDKEAADSAR-AVLSPEEVAKLCALAHIELAPEGGGSPGSSXXXXXXXSGNLNVATVQKDVGAMLRCMQTMRREGRDGEG----EHAEEKEGEE--DGPWGGAAPWAAPLQEDVVSDGGIQDKVLGAAQRSEDGFFTAPRVI 564
            +PY LP PTWSLSDLNV   D+   D+AR AVLS EEVAKLCALAHIELAPEG     SS        G L+V+ V+KDVGAMLRCMQTMRRE  D  G       +E EGEE  DGPWGGA  WAAPL+EDVVSDGGIQ +VLGAAQ +EDGFFTAP+V+
Sbjct:   76 SPYTLPPPTWSLSDLNVTDDDERGGDTARSAVLSNEEVAKLCALAHIELAPEGADGSCSS--------GKLDVSAVKKDVGAMLRCMQTMRREIDDSSGGGXXRGNQEIEGEEGEDGPWGGAVSWAAPLEEDVVSDGGIQKEVLGAAQHTEDGFFTAPKVV 228
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BLAST of mRNA_L-elsbetiae_contig10060.106.1 vs. uniprot
Match: A0A2D7J213_9PROT (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=6 Tax=Hyphomonadaceae TaxID=69657 RepID=A0A2D7J213_9PROT)

HSP 1 Score: 58.5 bits (140), Expect = 4.280e-8
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:  463 PLQEDVVSDGGIQDKVLGAAQRSEDGFFTAPRVIE 567
            P++EDV++DGGIQDKVL  A RSEDGFF  P+V+E
Sbjct:   61 PMREDVITDGGIQDKVLANAPRSEDGFFVVPKVVE 95
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BLAST of mRNA_L-elsbetiae_contig10060.106.1 vs. uniprot
Match: UPI000367D6C3 (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC n=1 Tax=Robiginitomaculum antarcticum TaxID=437507 RepID=UPI000367D6C3)

HSP 1 Score: 52.0 bits (123), Expect = 1.240e-5
Identity = 21/45 (46.67%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:  433 PWGGAAPWAAPLQEDVVSDGGIQDKVLGAAQRSEDGFFTAPRVIE 567
            P   A    APL++D ++DGG++DK+L  A +S+DGFF  PR +E
Sbjct:   51 PMTSAVDMDAPLRKDEITDGGVRDKILANAPKSDDGFFVVPRSVE 95
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BLAST of mRNA_L-elsbetiae_contig10060.106.1 vs. uniprot
Match: A0A2G1YAR4_9PROT (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=5 Tax=Bacteria TaxID=2 RepID=A0A2G1YAR4_9PROT)

HSP 1 Score: 51.6 bits (122), Expect = 1.930e-5
Identity = 21/45 (46.67%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:  433 PWGGAAPWAAPLQEDVVSDGGIQDKVLGAAQRSEDGFFTAPRVIE 567
            P   A   AAP++EDV++DGG++DK L  A ++E G+F  PR +E
Sbjct:   56 PMTSAVEMAAPMREDVITDGGVRDKXLANAPKTEAGYFVVPRSVE 100
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BLAST of mRNA_L-elsbetiae_contig10060.106.1 vs. uniprot
Match: A0A7G8ZJF6_9PROT (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A7G8ZJF6_9PROT)

HSP 1 Score: 50.8 bits (120), Expect = 3.330e-5
Identity = 22/35 (62.86%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:  463 PLQEDVVSDGGIQDKVLGAAQRSEDGFFTAPRVIE 567
            P +EDVVSDGGI+DKVL  A  SE+GFF  P+ +E
Sbjct:   61 PQREDVVSDGGIRDKVLANAPSSEEGFFVVPKSVE 95
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BLAST of mRNA_L-elsbetiae_contig10060.106.1 vs. uniprot
Match: UPI001575D56E (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC n=1 Tax=Sphingomonas bacterium TaxID=1895847 RepID=UPI001575D56E)

HSP 1 Score: 50.4 bits (119), Expect = 4.640e-5
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:  433 PWGGAAPWAAPLQEDVVSDGGIQDKVLGAAQRSEDGFFTAPRVIE 567
            P     P A  L++DVV+DGGI+DKVL  A ++E GF+  P+VIE
Sbjct:   51 PLAAVIPNALRLRDDVVTDGGIRDKVLANAPQAEHGFYAVPKVIE 95
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BLAST of mRNA_L-elsbetiae_contig10060.106.1 vs. uniprot
Match: A0A1I6JRL2_9SPHN (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Sphingomonas jatrophae TaxID=1166337 RepID=A0A1I6JRL2_9SPHN)

HSP 1 Score: 50.1 bits (118), Expect = 6.450e-5
Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:  433 PWGGAAPWAAPLQEDVVSDGGIQDKVLGAAQRSEDGFFTAPRVIE 567
            P     P    L++DVV+DGGI+DKVL  A ++E GFF  P+VIE
Sbjct:   51 PMASVIPNRQRLRDDVVTDGGIRDKVLANAPQAEHGFFAVPKVIE 95
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BLAST of mRNA_L-elsbetiae_contig10060.106.1 vs. uniprot
Match: A0A495RX32_SPHMI (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=2 Tax=Sphingosinicella TaxID=335405 RepID=A0A495RX32_SPHMI)

HSP 1 Score: 50.1 bits (118), Expect = 6.450e-5
Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:  442 GAAPWAAPL------QEDVVSDGGIQDKVLGAAQRSEDGFFTAPRVIE 567
            G  P AA +      +EDVV+DGGIQDKVL  A ++E GFF  P+VIE
Sbjct:   48 GVEPLAAVIPNTLRWREDVVTDGGIQDKVLSNAPKAEYGFFAVPKVIE 95
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10060.106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LBL2_ECTSI9.720e-5565.84Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2D7J213_9PROT4.280e-868.57Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s... [more]
UPI000367D6C31.240e-546.67Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subun... [more]
A0A2G1YAR4_9PROT1.930e-546.67Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s... [more]
A0A7G8ZJF6_9PROT3.330e-562.86Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s... [more]
UPI001575D56E4.640e-551.11Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subun... [more]
A0A1I6JRL2_9SPHN6.450e-551.11Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s... [more]
A0A495RX32_SPHMI6.450e-554.17Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10060contigL-elsbetiae_contig10060:1171..2573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_003540.1
Exons3
Model size573
Cds size573
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10060.106.1prot_L-elsbetiae_contig10060.106.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10060 1171..2573 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815238.8736403-CDS-L-elsbetiae_contig10060:1170..13801622815238.8736403-CDS-L-elsbetiae_contig10060:1170..1380Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10060 1171..1380 +
1691682789.2108421-CDS-L-elsbetiae_contig10060:1170..13801691682789.2108421-CDS-L-elsbetiae_contig10060:1170..1380Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10060 1171..1380 +
1622815238.887416-CDS-L-elsbetiae_contig10060:1867..21311622815238.887416-CDS-L-elsbetiae_contig10060:1867..2131Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10060 1868..2131 +
1691682789.2230666-CDS-L-elsbetiae_contig10060:1867..21311691682789.2230666-CDS-L-elsbetiae_contig10060:1867..2131Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10060 1868..2131 +
1622815238.9006433-CDS-L-elsbetiae_contig10060:2474..25731622815238.9006433-CDS-L-elsbetiae_contig10060:2474..2573Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10060 2475..2573 +
1691682789.2332735-CDS-L-elsbetiae_contig10060:2474..25731691682789.2332735-CDS-L-elsbetiae_contig10060:2474..2573Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10060 2475..2573 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10060.106.1

>prot_L-elsbetiae_contig10060.106.1 ID=prot_L-elsbetiae_contig10060.106.1|Name=mRNA_L-elsbetiae_contig10060.106.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=191bp
RELGTTATSVPAGRERANGAENGEGAGIAGLTVPAPYVLPAPTWSLSDLN
VATYDKEAADSARAVLSPEEVAKLCALAHIELAPEGGGSPGSSSSSGSGS
SGNLNVATVQKDVGAMLRCMQTMRREGRDGEGEHAEEKEGEEDGPWGGAA
PWAAPLQEDVVSDGGIQDKVLGAAQRSEDGFFTAPRVIEK*
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mRNA from alignment at L-elsbetiae_contig10060:1171..2573+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10060.106.1 ID=mRNA_L-elsbetiae_contig10060.106.1|Name=mRNA_L-elsbetiae_contig10060.106.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1403bp|location=Sequence derived from alignment at L-elsbetiae_contig10060:1171..2573+ (Laminarionema elsbetiae ELsaHSoW15)
CGAGAGCTTGGAACAACCGCCACCAGCGTTCCTGCGGGCAGAGAGAGGGC
AAATGGAGCAGAAAACGGAGAAGGGGCCGGTATCGCTGGCTTAACCGTTC
CTGCACCGTACGTGCTGCCGGCGCCGACTTGGTCGTTATCAGACCTCAAT
GTTGCCACCTACGACAAAGAAGCTGCAGACTCCGCGAGAGCGGTGCTCAG
CCCTGAGGAGGTGAAACATAACCCCACGCAGCTATGTAGCAGCAGCAAGA
AAGAGCAAAGAAAAACGGCCGTGGCATGATCCTATTGCAACGCATACGCT
TGCTTGATAGAAGCTTGGTACCATTAATTGGCAATGACCTTACATGCCTG
CGCTTGCCCTTGTGCTTCTTGTGTGGGCTTTGTTTTGTGTCGCGGCACAG
CAGACTTTACATGAAGGAGAGGATCCAACAAAGATATTCTGGGTTACAGC
TCATCCCTTCCACCTTTCAAACCCCACGTTTCCGCGAGGGGGTAGATATA
TATTTTAAAGCACAAAGGTGGTGGCACGAAATTTGCCCTGAAAAGGCTAC
CAGGTACTACTTATGTACGAGGGTCGACCTCACTCTGATCACTTGTTACT
TCCTCTCTGTTCCACTTGACAAAATCACCGCTGCACACATGCTCCCTCTT
GTCCCGCAATGGCATCCTCTTGTCAAATGTCAAACTCAACCATACAGGTA
GCCAAGCTGTGCGCACTAGCACATATCGAACTCGCGCCTGAAGGTGGCGG
TAGCCCTGGCAGCAGCAGCAGCAGTGGCAGCGGAAGCAGTGGCAACCTCA
ACGTGGCGACAGTTCAGAAAGACGTCGGAGCGATGCTGAGGTGCATGCAG
ACCATGCGAAGAGAGGGCCGAGACGGCGAAGGCGAACACGCGGAGGAAAA
GGAGGGGGAGGAGGACGGACCGTGGGGGGGCGCCGCGCCTTGGGCCGCGC
CGTTGCAGGAGGTGGGTTACCAACATTTATGCCCGTTCCAGTTGAGCAGG
CGAATACTGTAGCCTGAACTGCTGCAGGCAAGTCGCAGCTCGCGCCTTCG
TTCTTTTGGGTTCGGGAGTCTGGCGTGGCATGCAAAGGTTTCAGGTTGCA
GAGAGCGCAGCCATACCCACCCCACAAGACAAAATAAGAAAATAAGCGTT
TCGATGTACATACATGGCGTCGCGAATCCGATGGCTGCATTCGTGTTACA
TCTGGTTTGGCTCGCTCCCCTTTTCGTCTGGCCATTTTCCCCTTCTCCGC
CTGCATCTCCCCGATCACCCCCCTACTGAATGAAACACAAAAAACACACG
GCAGGACGTCGTATCGGACGGCGGCATCCAGGACAAGGTGTTGGGGGCGG
CGCAACGATCAGAGGACGGTTTTTTCACCGCCCCTAGGGTGATCGAAAAA
TGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10060:1171..2573+

>mRNA_L-elsbetiae_contig10060.106.1 ID=mRNA_L-elsbetiae_contig10060.106.1|Name=mRNA_L-elsbetiae_contig10060.106.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1146bp|location=Sequence derived from alignment at L-elsbetiae_contig10060:1171..2573+ (Laminarionema elsbetiae ELsaHSoW15)
CGAGAGCTTGGAACAACCGCCACCAGCGTTCCTGCGGGCAGAGAGAGGGC
AAATGGAGCAGAAAACGGAGAAGGGGCCGGTATCGCTGGCTTAACCGTTC
CTGCACCGTACGTGCTGCCGGCGCCGACTTGGTCGTTATCAGACCTCAAT
GTTGCCACCTACGACAAAGAAGCTGCAGACTCCGCGAGAGCGGTGCTCAG
CCCTGAGGAGCGAGAGCTTGGAACAACCGCCACCAGCGTTCCTGCGGGCA
GAGAGAGGGCAAATGGAGCAGAAAACGGAGAAGGGGCCGGTATCGCTGGC
TTAACCGTTCCTGCACCGTACGTGCTGCCGGCGCCGACTTGGTCGTTATC
AGACCTCAATGTTGCCACCTACGACAAAGAAGCTGCAGACTCCGCGAGAG
CGGTGCTCAGCCCTGAGGAGGTAGCCAAGCTGTGCGCACTAGCACATATC
GAACTCGCGCCTGAAGGTGGCGGTAGCCCTGGCAGCAGCAGCAGCAGTGG
CAGCGGAAGCAGTGGCAACCTCAACGTGGCGACAGTTCAGAAAGACGTCG
GAGCGATGCTGAGGTGCATGCAGACCATGCGAAGAGAGGGCCGAGACGGC
GAAGGCGAACACGCGGAGGAAAAGGAGGGGGAGGAGGACGGACCGTGGGG
GGGCGCCGCGCCTTGGGCCGCGCCGTTGCAGGAGGTAGCCAAGCTGTGCG
CACTAGCACATATCGAACTCGCGCCTGAAGGTGGCGGTAGCCCTGGCAGC
AGCAGCAGCAGTGGCAGCGGAAGCAGTGGCAACCTCAACGTGGCGACAGT
TCAGAAAGACGTCGGAGCGATGCTGAGGTGCATGCAGACCATGCGAAGAG
AGGGCCGAGACGGCGAAGGCGAACACGCGGAGGAAAAGGAGGGGGAGGAG
GACGGACCGTGGGGGGGCGCCGCGCCTTGGGCCGCGCCGTTGCAGGAGGA
CGTCGTATCGGACGGCGGCATCCAGGACAAGGTGTTGGGGGCGGCGCAAC
GATCAGAGGACGGTTTTTTCACCGCCCCTAGGGTGATCGAAAAATGAGAC
GTCGTATCGGACGGCGGCATCCAGGACAAGGTGTTGGGGGCGGCGCAACG
ATCAGAGGACGGTTTTTTCACCGCCCCTAGGGTGATCGAAAAATGA
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