mRNA_L-elsbetiae_contig10060.106.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig10060.106.1 vs. uniprot
Match: D8LBL2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBL2_ECTSI) HSP 1 Score: 182 bits (462), Expect = 9.720e-55 Identity = 106/161 (65.84%), Postives = 118/161 (73.29%), Query Frame = 1 Query: 103 APYVLPAPTWSLSDLNVATYDKEAADSAR-AVLSPEEVAKLCALAHIELAPEGGGSPGSSXXXXXXXSGNLNVATVQKDVGAMLRCMQTMRREGRDGEG----EHAEEKEGEE--DGPWGGAAPWAAPLQEDVVSDGGIQDKVLGAAQRSEDGFFTAPRVI 564 +PY LP PTWSLSDLNV D+ D+AR AVLS EEVAKLCALAHIELAPEG SS G L+V+ V+KDVGAMLRCMQTMRRE D G +E EGEE DGPWGGA WAAPL+EDVVSDGGIQ +VLGAAQ +EDGFFTAP+V+ Sbjct: 76 SPYTLPPPTWSLSDLNVTDDDERGGDTARSAVLSNEEVAKLCALAHIELAPEGADGSCSS--------GKLDVSAVKKDVGAMLRCMQTMRREIDDSSGGGXXRGNQEIEGEEGEDGPWGGAVSWAAPLEEDVVSDGGIQKEVLGAAQHTEDGFFTAPKVV 228
BLAST of mRNA_L-elsbetiae_contig10060.106.1 vs. uniprot
Match: A0A2D7J213_9PROT (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=6 Tax=Hyphomonadaceae TaxID=69657 RepID=A0A2D7J213_9PROT) HSP 1 Score: 58.5 bits (140), Expect = 4.280e-8 Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 1 Query: 463 PLQEDVVSDGGIQDKVLGAAQRSEDGFFTAPRVIE 567 P++EDV++DGGIQDKVL A RSEDGFF P+V+E Sbjct: 61 PMREDVITDGGIQDKVLANAPRSEDGFFVVPKVVE 95
BLAST of mRNA_L-elsbetiae_contig10060.106.1 vs. uniprot
Match: UPI000367D6C3 (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC n=1 Tax=Robiginitomaculum antarcticum TaxID=437507 RepID=UPI000367D6C3) HSP 1 Score: 52.0 bits (123), Expect = 1.240e-5 Identity = 21/45 (46.67%), Postives = 31/45 (68.89%), Query Frame = 1 Query: 433 PWGGAAPWAAPLQEDVVSDGGIQDKVLGAAQRSEDGFFTAPRVIE 567 P A APL++D ++DGG++DK+L A +S+DGFF PR +E Sbjct: 51 PMTSAVDMDAPLRKDEITDGGVRDKILANAPKSDDGFFVVPRSVE 95
BLAST of mRNA_L-elsbetiae_contig10060.106.1 vs. uniprot
Match: A0A2G1YAR4_9PROT (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=5 Tax=Bacteria TaxID=2 RepID=A0A2G1YAR4_9PROT) HSP 1 Score: 51.6 bits (122), Expect = 1.930e-5 Identity = 21/45 (46.67%), Postives = 31/45 (68.89%), Query Frame = 1 Query: 433 PWGGAAPWAAPLQEDVVSDGGIQDKVLGAAQRSEDGFFTAPRVIE 567 P A AAP++EDV++DGG++DK L A ++E G+F PR +E Sbjct: 56 PMTSAVEMAAPMREDVITDGGVRDKXLANAPKTEAGYFVVPRSVE 100
BLAST of mRNA_L-elsbetiae_contig10060.106.1 vs. uniprot
Match: A0A7G8ZJF6_9PROT (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A7G8ZJF6_9PROT) HSP 1 Score: 50.8 bits (120), Expect = 3.330e-5 Identity = 22/35 (62.86%), Postives = 27/35 (77.14%), Query Frame = 1 Query: 463 PLQEDVVSDGGIQDKVLGAAQRSEDGFFTAPRVIE 567 P +EDVVSDGGI+DKVL A SE+GFF P+ +E Sbjct: 61 PQREDVVSDGGIRDKVLANAPSSEEGFFVVPKSVE 95
BLAST of mRNA_L-elsbetiae_contig10060.106.1 vs. uniprot
Match: UPI001575D56E (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC n=1 Tax=Sphingomonas bacterium TaxID=1895847 RepID=UPI001575D56E) HSP 1 Score: 50.4 bits (119), Expect = 4.640e-5 Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 1 Query: 433 PWGGAAPWAAPLQEDVVSDGGIQDKVLGAAQRSEDGFFTAPRVIE 567 P P A L++DVV+DGGI+DKVL A ++E GF+ P+VIE Sbjct: 51 PLAAVIPNALRLRDDVVTDGGIRDKVLANAPQAEHGFYAVPKVIE 95
BLAST of mRNA_L-elsbetiae_contig10060.106.1 vs. uniprot
Match: A0A1I6JRL2_9SPHN (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Sphingomonas jatrophae TaxID=1166337 RepID=A0A1I6JRL2_9SPHN) HSP 1 Score: 50.1 bits (118), Expect = 6.450e-5 Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 1 Query: 433 PWGGAAPWAAPLQEDVVSDGGIQDKVLGAAQRSEDGFFTAPRVIE 567 P P L++DVV+DGGI+DKVL A ++E GFF P+VIE Sbjct: 51 PMASVIPNRQRLRDDVVTDGGIRDKVLANAPQAEHGFFAVPKVIE 95
BLAST of mRNA_L-elsbetiae_contig10060.106.1 vs. uniprot
Match: A0A495RX32_SPHMI (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=2 Tax=Sphingosinicella TaxID=335405 RepID=A0A495RX32_SPHMI) HSP 1 Score: 50.1 bits (118), Expect = 6.450e-5 Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = 1 Query: 442 GAAPWAAPL------QEDVVSDGGIQDKVLGAAQRSEDGFFTAPRVIE 567 G P AA + +EDVV+DGGIQDKVL A ++E GFF P+VIE Sbjct: 48 GVEPLAAVIPNTLRWREDVVTDGGIQDKVLSNAPKAEYGFFAVPKVIE 95 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10060.106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10060.106.1 >prot_L-elsbetiae_contig10060.106.1 ID=prot_L-elsbetiae_contig10060.106.1|Name=mRNA_L-elsbetiae_contig10060.106.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=191bp RELGTTATSVPAGRERANGAENGEGAGIAGLTVPAPYVLPAPTWSLSDLNback to top mRNA from alignment at L-elsbetiae_contig10060:1171..2573+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig10060.106.1 ID=mRNA_L-elsbetiae_contig10060.106.1|Name=mRNA_L-elsbetiae_contig10060.106.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1403bp|location=Sequence derived from alignment at L-elsbetiae_contig10060:1171..2573+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig10060:1171..2573+ >mRNA_L-elsbetiae_contig10060.106.1 ID=mRNA_L-elsbetiae_contig10060.106.1|Name=mRNA_L-elsbetiae_contig10060.106.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1146bp|location=Sequence derived from alignment at L-elsbetiae_contig10060:1171..2573+ (Laminarionema elsbetiae ELsaHSoW15)back to top |