mRNA_L-elsbetiae_contig1005.94.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1005.94.1 vs. uniprot
Match: A0A6H5L7K6_9PHAE (PseudoU_synth_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7K6_9PHAE) HSP 1 Score: 370 bits (950), Expect = 4.910e-118 Identity = 209/396 (52.78%), Postives = 243/396 (61.36%), Query Frame = 2 Query: 464 SPPLDILHRNEDFAVVCKPALMHVHRPEFGSKDKEFVMQKARNQLGQRVFLPHRLDRGTSGCLLLGFSPEAGKVLHRALADSTSRKTYVAIVRGSGEAYLGKGWFTVDRPIKDDKKVLREASTRFLFVRGGDTPDPRCCLVLAQPSTGRFHQIRRHLNGISHPVVGDSVHGSSSFNRELVGHPNNPAPAGRLLLHCLRLELPTLPDAGSNSWK--TGSEEATADXXXXXXXXXXXXXXDGSDNARRVSE---------DNGEAHPQGSDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-RGRGGVTSGAVSPGLLHPARATVPSAVVTQTAGGATLSPSIAGANKAIGEGGRSDEAGGAEVE-----GMEVYAEPPDDMLAFLRGMSWWEEGMI 1600 SPPL++LH+NE FAVV KP MH HRPEFGS+D +FVMQKAR+QLG+RVFLPHRLDR TSGCLL+GFS A KVLH+ LA S KTY+AIVRGSG A++GKGWFTVDRPIKD+KK+LREASTRFLFVRGG+ PDPRCC VLAQPSTGRFHQIRRHLNG+SHP+VGDSVHG FNRE+ GH N+ APAGRL+LHCLRL LPTLPD GS + K TG + + NAR E ++G + G DG + R S P + V T A +SPS+ G ++ G R G E G VYAEPPDDM+ FLRGMSWWEEG+ Sbjct: 129 SPPLEVLHQNEHFAVVSKPPGMHCHRPEFGSRDPDFVMQKARDQLGRRVFLPHRLDRATSGCLLVGFSSHAAKVLHQTLAQPDSSKTYLAIVRGSGSAFVGKGWFTVDRPIKDEKKILREASTRFLFVRGGNDPDPRCCFVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGDCRFNREVAGHRNS-APAGRLMLHCLRLSLPTLPDVGSQALKSATGRILSPDKDTMTNDYCGSKRKSERGHNARAGQERGERPSRKREDGHGNTTGVDGREARASGSVSEEVQGPVETEKAASNTGDPYPKPRSEFDSARTPPASAPRQEISTEPFVPTLAEISAAISPSV-GKKESSTRGCRPRGIDGEAQEDLVEEGFHVYAEPPDDMMEFLRGMSWWEEGLF 522
BLAST of mRNA_L-elsbetiae_contig1005.94.1 vs. uniprot
Match: A0A7S2LAN5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LAN5_9STRA) HSP 1 Score: 172 bits (437), Expect = 2.770e-45 Identity = 104/233 (44.64%), Postives = 135/233 (57.94%), Query Frame = 2 Query: 416 ALEEGSAMDILTERSPSPPLDILHRNEDFAVVCKPALMHVHRPEF-GSKDKEFVM-QKARNQLGQRVFLPHRLDRGTSGCLLLGFSPE-------AGKVLHRALADSTSRKTYVAIVRGSG----EAYLGKGWFTVDRPIKDDKKVLREASTRFLFVRGGDTPDP--RCCLVLAQPSTGRFHQIRRHLNGISHPVVGDSVHGSSSFNRELVGHPNNPAPAGRLLLHCLRLELP 1069 A S+ E +P ++IL R A+ KP + H ++ G K+ E M Q+ R+ +G+RV L HRLDRG SGCLL + E KVL AL + KTYVAIVRG G E + GKGWF +DRPIKD+ + A T F FV G + + R LVLA+PSTGR+HQIRRHLNG+SHP++GDS HG+S NRE + P R+ LH R++LP Sbjct: 36 ARSSSSSSVSFEEINPINLVEILSRGPHHAIANKPPSVKCHNSDWTGPKNNEVAMLQRVRDTIGRRVNLIHRLDRGASGCLLASHAEENCDELRECTKVLSDALQSPLATKTYVAIVRGEGILKDEDFKGKGWFHIDRPIKDENGIENGAKTAFRFVAGVNRANDGVRASLVLARPSTGRWHQIRRHLNGLSHPILGDSTHGNSRTNREWR---DRGLPGERICLHLARIQLP 265
BLAST of mRNA_L-elsbetiae_contig1005.94.1 vs. uniprot
Match: A0A7S3ZM53_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZM53_9STRA) HSP 1 Score: 170 bits (430), Expect = 1.930e-44 Identity = 103/226 (45.58%), Postives = 131/226 (57.96%), Query Frame = 2 Query: 461 PSPPLDILHRNEDFAVVCKPALMHVHRPEFGSKDKEF-VMQKARNQLGQRVFLPHRLDRGTSGCLLLGFSP-----EAGKVLHRALADSTSRKTYVAIVRGSG---EAYLGK-------------GWFTVDRPIKDDKKVLREASTRFLFVRGGDTPDP-RCCLVLAQPSTGRFHQIRRHLNGISHPVVGDSVHGSSSFNRELVGHPNNPAPAGRLLLHCLRLELP 1069 P PPL+IL+ + FA+V KP + H E+ KD ++Q+AR+ LG+RV L HRLDRG SGC++ ++ E L ALA +KTYVA+VRG G E L K GWF VDRPIKDD+ A+T F FV + D R LV A+P+TGR+HQIRRHLNG+SHP++GDS HG+S NRE P RL LH R+ LP Sbjct: 38 PPPPLEILYEGDTFAIVAKPGGVPSHASEYIGKDYVVPLLQRARDALGRRVNLVHRLDRGASGCVICAYADLDDAAEVTTALGEALA--AGQKTYVALVRGEGFLREDLLEKAGADVPSGDLKREGWFVVDRPIKDDRGRENNATTTFKFVASTGSEDAARASLVAARPATGRWHQIRRHLNGLSHPILGDSSHGNSRTNREW--RKERDLPGARLCLHLCRISLP 259
BLAST of mRNA_L-elsbetiae_contig1005.94.1 vs. uniprot
Match: A0A1Z5J6G5_FISSO (PseudoU_synth_2 domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J6G5_FISSO) HSP 1 Score: 166 bits (420), Expect = 9.380e-43 Identity = 100/211 (47.39%), Postives = 136/211 (64.45%), Query Frame = 2 Query: 473 LDILHRNEDFAVVCKPALMHVHRPEF-GSKDKEFV--MQKARNQLGQRVFLPHRLDRGTSGCLLLGFSPEAGKV--LHRALADSTSRKTYVAIVRGSG----EAYLGKGWFTVDRPIKDDKKVLREASTRFLFVRGGDTPD--PRCCLVLAQPSTGRFHQIRRHLNGISHPVVGDSVHGSSSFNRELVGHPNNPAPAGRLLLHCLRLELPT 1072 + IL +++D+ VV KP + H ++ GS+ ++ + +Q+ R +G R+ L HRLDRG SGCLL+ + + GK L +A+A++ + KTY+AIVRG G E KGWF VDRPIK+++ VL EAST F FV G D PR LVLA+P TGR+HQIRRHLNG+SHP++GDS HG+S N+E P R LH RL+L T Sbjct: 58 ITILAKSDDYLVVDKPPSVVCHHSDWTGSRSQQEIPMLQRVRQAVGSRINLVHRLDRGCSGCLLVTYQKD-GKTATLSQAMAENAT-KTYIAIVRGEGILRGEDLKEKGWFLVDRPIKNERGVLHEASTWFRFVAGQPEVDGQPRASLVLARPMTGRWHQIRRHLNGLSHPILGDSSHGNSKVNQEWRAQ-RGMLPE-RTCLHLARLQLST 264
BLAST of mRNA_L-elsbetiae_contig1005.94.1 vs. uniprot
Match: A0A7S1FQ02_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FQ02_9STRA) HSP 1 Score: 165 bits (417), Expect = 5.200e-42 Identity = 105/243 (43.21%), Postives = 135/243 (55.56%), Query Frame = 2 Query: 500 FAVVCKPALMHVHRPEF-------GSKDKEFVMQKARNQLGQRVFLPHRLDRGTSGCLLLGFS------PEAGKV------------------LHRALADSTSRKTYVAIVRGS----GEAYLGKGWFTVDRPIKDDKKVLREASTRFLFVRGGDTP-DPRCCLVLAQPSTGRFHQIRRHLNGISHPVVGDSVHGSSSFNRELVGHPNNPAPAGRLLLHCLRLELPTLPDAGSNSWKTGSEEA 1120 + VV KP + HR ++ G+ + ++Q+ R+Q+G+RV L HRLDRG SGCLLL F+ E GK L +LAD + KTYVA+VRG GE +GWF VDRPI+D + V REA T+F FV G D R +VLA+P TGR+HQIRRHLNG+SHP++GDS HG+S NRE P RL LH ++ LP+L NS G E A Sbjct: 78 YLVVAKPPAVACHRSDYIGRKAPDGTPEPPAMVQRIRDQVGRRVNLIHRLDRGASGCLLLAFAGDSRGEDEDGKDGEGGGEDSAERYRDTTRRLIASLADDRAVKTYVALVRGGPFLHGEDLRRRGWFAVDRPIRDARGVEREALTQFRFVAGTDDDCAARASIVLARPRTGRWHQIRRHLNGLSHPILGDSTHGNSRINREW--RSKRGLPGQRLCLHLAKMSLPSL----ENSETAGLEVA 314
BLAST of mRNA_L-elsbetiae_contig1005.94.1 vs. uniprot
Match: A0A1Z5K7F0_FISSO (PseudoU_synth_2 domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7F0_FISSO) HSP 1 Score: 162 bits (411), Expect = 1.870e-41 Identity = 96/212 (45.28%), Postives = 134/212 (63.21%), Query Frame = 2 Query: 473 LDILHRNEDFAVVCKPALMHVHRPEF-GSKDKEFV--MQKARNQLGQRVFLPHRLDRGTSGCLLLGFSPEAGK---VLHRALADSTSRKTYVAIVRGSG----EAYLGKGWFTVDRPIKDDKKVLREASTRFLFVRGGDTPD--PRCCLVLAQPSTGRFHQIRRHLNGISHPVVGDSVHGSSSFNRELVGHPNNPAPAGRLLLHCLRLELPT 1072 + I+ +++D+ VV KP + H E+ GS+ ++ + +Q+ R +G R+ L HRLDR SGCLL+ + + G + +A+A++ + KTY+A+VRG G E KGWF VDRPIK+++ VL EAST F FV G D PR LVLA+P TGR+HQIRRHLNG+SHP++GDS HG+S N+E P R LH RL+L T Sbjct: 54 ITIVAKSDDYLVVDKPPSVVCHHSEWTGSRSQQEIPMLQRVRQAVGSRINLVHRLDRVCSGCLLVTYQKDDGDMTAIFSQAMAENAT-KTYIALVRGEGILHGEDLKQKGWFLVDRPIKNERGVLHEASTWFRFVAGQPEVDGQPRASLVLARPRTGRWHQIRRHLNGLSHPILGDSSHGNSKVNQEWRSQ-RGMLPE-RTCLHLARLQLST 262
BLAST of mRNA_L-elsbetiae_contig1005.94.1 vs. uniprot
Match: R1EHE9_EMIHU (PseudoU_synth_2 domain-containing protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EHE9_EMIHU) HSP 1 Score: 155 bits (393), Expect = 2.980e-40 Identity = 84/190 (44.21%), Postives = 111/190 (58.42%), Query Frame = 2 Query: 464 SPPLDILHRNEDFAVVCKPALMHVHRPEFGSKDKEFVMQKARNQLGQRVFLPHRLDRGTSGCLLLGFSPEAGKVLHRALADSTSRKTYVAIVRGSGEAYLGKGWFTVDRPIKDDKKVLREASTRFLFVRGGDTPDPR-------------CCLVLAQPSTGRFHQIRRHLNGISHPVVGDSVHGSSSFNR 994 SP + IL R F VV KPA + VHR ++ K ++Q R+QLG +V HRLD GTSGCL+ E L RA A RKTY+A+ RG+ LG+G V+RP++DDK VLR A T + + G D + LV+A+P+TGRFHQIR+HL G+SHP++GD+ HG S NR Sbjct: 12 SPSIPILARRPGFCVVAKPAGLVVHRNDWSRKGDVALLQLLRDQLGTQVNPVHRLDAGTSGCLVFAEDSETTAALQRAFASGRVRKTYIAVARGNAMPTLGEG-LVVERPVRDDKGVLRAARTELMCLGGCDGEEVAGEGEAVTGRLNLGASLVVAEPTTGRFHQIRKHLGGLSHPILGDAKHGDSRVNR 200
BLAST of mRNA_L-elsbetiae_contig1005.94.1 vs. uniprot
Match: A0A1E7F626_9STRA (Pseudouridine synthase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F626_9STRA) HSP 1 Score: 156 bits (394), Expect = 4.430e-40 Identity = 92/228 (40.35%), Postives = 132/228 (57.89%), Query Frame = 2 Query: 473 LDILHRNEDFAVVCKPALMHVHRPEFG---SKDKEFV--------MQKARNQLGQRVFLPHRLDRGTSGCLLLGFSPE------AGKVLHRALADSTS-----RKTYVAIVRGSG----EAYLGKGWFTVDRPIKDDKKVLREASTRFLFVRGGDTPD---PRCCLVLAQPSTGRFHQIRRHLNGISHPVVGDSVHGSSSFNRELVGHPNNPAPAGRLLLHCLRLELP 1069 + IL R ++ VV KP+ + HR ++ ++ KE + +Q+ R +G++V L HRLDRG SGCLL F+ A ++ + + +S KTY+AIVRG G + +GWF VDRPIKD+ L+ A++ F F+ G D + PR LVLA+ TGR+HQIR+HLNG+SHP++GDS HG S NRE + + R+ LH L+LELP Sbjct: 12 VSILDRGDNHVVVSKPSAVICHRSDWTGRRNRKKESIITSEEVPMLQRVREAVGEKVNLVHRLDRGASGCLLFSFAKSDKDGGNATAIMQECMTNDSSSTSDTHKTYIAIVRGEGLLKGRDFRQEGWFEVDRPIKDESGNLKNATSYFRFIAGQDDGNGTRPRASLVLARIKTGRWHQIRKHLNGLSHPIIGDSTHGISKTNREWIEKWD--LKRERICLHLLKLELP 237
BLAST of mRNA_L-elsbetiae_contig1005.94.1 vs. uniprot
Match: B7FYH0_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FYH0_PHATC) HSP 1 Score: 154 bits (388), Expect = 2.150e-38 Identity = 96/223 (43.05%), Postives = 128/223 (57.40%), Query Frame = 2 Query: 479 ILHRNEDFAVVCKPALMHVHRPEF-GSKDKEF---VMQKARNQLGQR-VFLPHRLDRGTSGCLLLGFS----------PEAGKVLHRALADSTSRKTYVAIVRGSG----EAYLGKGWFTVDRPIKDDKKVLREASTRFLFVRGGDTPD-----PRCCLVLAQPSTGRFHQIRRHLNGISHPVVGDSVHGSSSFNRE---LVGHPNNPAPAGRLLLHCLRLEL 1066 IL R + + VV KP + H E+ GS+ F ++Q+ R +G V L HRL+ G SGCLLL ++ P L ++ ++ S KTY+A+VRG G + +GWF VDRPIK++K +L A+T F FV G D PR LVLA+P TGR+HQIRRHLNG+SHP++GD+ HG+S NRE L G PA R LH RL+L Sbjct: 91 ILARTDRYVVVAKPPTVVCHHSEWTGSRSDPFQIPMLQRTREAMGGNCVNLVHRLNWGCSGCLLLTYAADTADAEIYIPNTTATLIASMKETASLKTYLALVRGEGLLQGRDFKQEGWFKVDRPIKNEKGILNNATTWFRFVAGQDNDSGRINQPRASLVLARPETGRWHQIRRHLNGLSHPILGDTSHGNSHVNREWRDLRG-----MPAQRTCLHLARLQL 308
BLAST of mRNA_L-elsbetiae_contig1005.94.1 vs. uniprot
Match: A0A448Z1P7_9STRA (PseudoU_synth_2 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z1P7_9STRA) HSP 1 Score: 153 bits (387), Expect = 1.540e-37 Identity = 97/230 (42.17%), Postives = 130/230 (56.52%), Query Frame = 2 Query: 473 LDILHRNEDFAVVCKPALMHVHRPEFGSKDKEF-----------VMQKARNQLGQRVFLPHRLDRGTSGCLLLGF--SPEAG----KVLHRALA-DSTSRKTYVAIVRGSG----EAYLGKGWFTVDRPIKDDKKVLREASTRFLFVRG-----GDTPD-PRCCLVLAQPSTGRFHQIRRHLNGISHPVVGDSVHGSSSFNRELVGHPNNPAPAGRLLLHCLRLELPTLP 1078 + IL R + VV KP + HR ++ K+ ++Q+AR +G+RV L HRLDRG SGCLL+ F S E G VL ++ S+S KTY+A+VRG G + +GWF V RPIK++ L+ A++ F F+ G G D PR LVLA+ TGR+HQIR+HLNG+SHP++GDS HG+S NRE R LH L+LELP P Sbjct: 97 VSILDRGPNHLVVSKPPSVLCHRSDWSGSGKKRSAKQRGPPEVPMLQRAREAVGERVNLVHRLDRGASGCLLMSFAGSDENGGNATAVLQESMTRTSSSHKTYLALVRGEGILKGRDFRQEGWFEVSRPIKNEAGTLKNATSYFRFIAGQGNENGALEDVPRASLVLARIKTGRWHQIRKHLNGLSHPIIGDSTHGNSKTNREW--RQKWGLEPERTCLHLLKLELPATP 324 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1005.94.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1005.94.1 >prot_L-elsbetiae_contig1005.94.1 ID=prot_L-elsbetiae_contig1005.94.1|Name=mRNA_L-elsbetiae_contig1005.94.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=492bp MRRFRERLLLLPASLMTLCGAFVHPRVSPWLPIERRDCVFSLQASKADAAback to top mRNA from alignment at L-elsbetiae_contig1005:22457..25714- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1005.94.1 ID=mRNA_L-elsbetiae_contig1005.94.1|Name=mRNA_L-elsbetiae_contig1005.94.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3258bp|location=Sequence derived from alignment at L-elsbetiae_contig1005:22457..25714- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1005:22457..25714- >mRNA_L-elsbetiae_contig1005.94.1 ID=mRNA_L-elsbetiae_contig1005.94.1|Name=mRNA_L-elsbetiae_contig1005.94.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2952bp|location=Sequence derived from alignment at L-elsbetiae_contig1005:22457..25714- (Laminarionema elsbetiae ELsaHSoW15)back to top |