mRNA_L-elsbetiae_contig1005.94.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1005.94.1
Unique NamemRNA_L-elsbetiae_contig1005.94.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1005.94.1 vs. uniprot
Match: A0A6H5L7K6_9PHAE (PseudoU_synth_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7K6_9PHAE)

HSP 1 Score: 370 bits (950), Expect = 4.910e-118
Identity = 209/396 (52.78%), Postives = 243/396 (61.36%), Query Frame = 2
Query:  464 SPPLDILHRNEDFAVVCKPALMHVHRPEFGSKDKEFVMQKARNQLGQRVFLPHRLDRGTSGCLLLGFSPEAGKVLHRALADSTSRKTYVAIVRGSGEAYLGKGWFTVDRPIKDDKKVLREASTRFLFVRGGDTPDPRCCLVLAQPSTGRFHQIRRHLNGISHPVVGDSVHGSSSFNRELVGHPNNPAPAGRLLLHCLRLELPTLPDAGSNSWK--TGSEEATADXXXXXXXXXXXXXXDGSDNARRVSE---------DNGEAHPQGSDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-RGRGGVTSGAVSPGLLHPARATVPSAVVTQTAGGATLSPSIAGANKAIGEGGRSDEAGGAEVE-----GMEVYAEPPDDMLAFLRGMSWWEEGMI 1600
            SPPL++LH+NE FAVV KP  MH HRPEFGS+D +FVMQKAR+QLG+RVFLPHRLDR TSGCLL+GFS  A KVLH+ LA   S KTY+AIVRGSG A++GKGWFTVDRPIKD+KK+LREASTRFLFVRGG+ PDPRCC VLAQPSTGRFHQIRRHLNG+SHP+VGDSVHG   FNRE+ GH N+ APAGRL+LHCLRL LPTLPD GS + K  TG   +                 +   NAR   E         ++G  +  G DG                               + R    S    P        +    V T     A +SPS+ G  ++   G R     G   E     G  VYAEPPDDM+ FLRGMSWWEEG+ 
Sbjct:  129 SPPLEVLHQNEHFAVVSKPPGMHCHRPEFGSRDPDFVMQKARDQLGRRVFLPHRLDRATSGCLLVGFSSHAAKVLHQTLAQPDSSKTYLAIVRGSGSAFVGKGWFTVDRPIKDEKKILREASTRFLFVRGGNDPDPRCCFVLAQPSTGRFHQIRRHLNGLSHPIVGDSVHGDCRFNREVAGHRNS-APAGRLMLHCLRLSLPTLPDVGSQALKSATGRILSPDKDTMTNDYCGSKRKSERGHNARAGQERGERPSRKREDGHGNTTGVDGREARASGSVSEEVQGPVETEKAASNTGDPYPKPRSEFDSARTPPASAPRQEISTEPFVPTLAEISAAISPSV-GKKESSTRGCRPRGIDGEAQEDLVEEGFHVYAEPPDDMMEFLRGMSWWEEGLF 522          
BLAST of mRNA_L-elsbetiae_contig1005.94.1 vs. uniprot
Match: A0A7S2LAN5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LAN5_9STRA)

HSP 1 Score: 172 bits (437), Expect = 2.770e-45
Identity = 104/233 (44.64%), Postives = 135/233 (57.94%), Query Frame = 2
Query:  416 ALEEGSAMDILTERSPSPPLDILHRNEDFAVVCKPALMHVHRPEF-GSKDKEFVM-QKARNQLGQRVFLPHRLDRGTSGCLLLGFSPE-------AGKVLHRALADSTSRKTYVAIVRGSG----EAYLGKGWFTVDRPIKDDKKVLREASTRFLFVRGGDTPDP--RCCLVLAQPSTGRFHQIRRHLNGISHPVVGDSVHGSSSFNRELVGHPNNPAPAGRLLLHCLRLELP 1069
            A    S+     E +P   ++IL R    A+  KP  +  H  ++ G K+ E  M Q+ R+ +G+RV L HRLDRG SGCLL   + E         KVL  AL    + KTYVAIVRG G    E + GKGWF +DRPIKD+  +   A T F FV G +  +   R  LVLA+PSTGR+HQIRRHLNG+SHP++GDS HG+S  NRE     +   P  R+ LH  R++LP
Sbjct:   36 ARSSSSSSVSFEEINPINLVEILSRGPHHAIANKPPSVKCHNSDWTGPKNNEVAMLQRVRDTIGRRVNLIHRLDRGASGCLLASHAEENCDELRECTKVLSDALQSPLATKTYVAIVRGEGILKDEDFKGKGWFHIDRPIKDENGIENGAKTAFRFVAGVNRANDGVRASLVLARPSTGRWHQIRRHLNGLSHPILGDSTHGNSRTNREWR---DRGLPGERICLHLARIQLP 265          
BLAST of mRNA_L-elsbetiae_contig1005.94.1 vs. uniprot
Match: A0A7S3ZM53_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZM53_9STRA)

HSP 1 Score: 170 bits (430), Expect = 1.930e-44
Identity = 103/226 (45.58%), Postives = 131/226 (57.96%), Query Frame = 2
Query:  461 PSPPLDILHRNEDFAVVCKPALMHVHRPEFGSKDKEF-VMQKARNQLGQRVFLPHRLDRGTSGCLLLGFSP-----EAGKVLHRALADSTSRKTYVAIVRGSG---EAYLGK-------------GWFTVDRPIKDDKKVLREASTRFLFVRGGDTPDP-RCCLVLAQPSTGRFHQIRRHLNGISHPVVGDSVHGSSSFNRELVGHPNNPAPAGRLLLHCLRLELP 1069
            P PPL+IL+  + FA+V KP  +  H  E+  KD    ++Q+AR+ LG+RV L HRLDRG SGC++  ++      E    L  ALA    +KTYVA+VRG G   E  L K             GWF VDRPIKDD+     A+T F FV    + D  R  LV A+P+TGR+HQIRRHLNG+SHP++GDS HG+S  NRE         P  RL LH  R+ LP
Sbjct:   38 PPPPLEILYEGDTFAIVAKPGGVPSHASEYIGKDYVVPLLQRARDALGRRVNLVHRLDRGASGCVICAYADLDDAAEVTTALGEALA--AGQKTYVALVRGEGFLREDLLEKAGADVPSGDLKREGWFVVDRPIKDDRGRENNATTTFKFVASTGSEDAARASLVAARPATGRWHQIRRHLNGLSHPILGDSSHGNSRTNREW--RKERDLPGARLCLHLCRISLP 259          
BLAST of mRNA_L-elsbetiae_contig1005.94.1 vs. uniprot
Match: A0A1Z5J6G5_FISSO (PseudoU_synth_2 domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J6G5_FISSO)

HSP 1 Score: 166 bits (420), Expect = 9.380e-43
Identity = 100/211 (47.39%), Postives = 136/211 (64.45%), Query Frame = 2
Query:  473 LDILHRNEDFAVVCKPALMHVHRPEF-GSKDKEFV--MQKARNQLGQRVFLPHRLDRGTSGCLLLGFSPEAGKV--LHRALADSTSRKTYVAIVRGSG----EAYLGKGWFTVDRPIKDDKKVLREASTRFLFVRGGDTPD--PRCCLVLAQPSTGRFHQIRRHLNGISHPVVGDSVHGSSSFNRELVGHPNNPAPAGRLLLHCLRLELPT 1072
            + IL +++D+ VV KP  +  H  ++ GS+ ++ +  +Q+ R  +G R+ L HRLDRG SGCLL+ +  + GK   L +A+A++ + KTY+AIVRG G    E    KGWF VDRPIK+++ VL EAST F FV G    D  PR  LVLA+P TGR+HQIRRHLNG+SHP++GDS HG+S  N+E         P  R  LH  RL+L T
Sbjct:   58 ITILAKSDDYLVVDKPPSVVCHHSDWTGSRSQQEIPMLQRVRQAVGSRINLVHRLDRGCSGCLLVTYQKD-GKTATLSQAMAENAT-KTYIAIVRGEGILRGEDLKEKGWFLVDRPIKNERGVLHEASTWFRFVAGQPEVDGQPRASLVLARPMTGRWHQIRRHLNGLSHPILGDSSHGNSKVNQEWRAQ-RGMLPE-RTCLHLARLQLST 264          
BLAST of mRNA_L-elsbetiae_contig1005.94.1 vs. uniprot
Match: A0A7S1FQ02_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FQ02_9STRA)

HSP 1 Score: 165 bits (417), Expect = 5.200e-42
Identity = 105/243 (43.21%), Postives = 135/243 (55.56%), Query Frame = 2
Query:  500 FAVVCKPALMHVHRPEF-------GSKDKEFVMQKARNQLGQRVFLPHRLDRGTSGCLLLGFS------PEAGKV------------------LHRALADSTSRKTYVAIVRGS----GEAYLGKGWFTVDRPIKDDKKVLREASTRFLFVRGGDTP-DPRCCLVLAQPSTGRFHQIRRHLNGISHPVVGDSVHGSSSFNRELVGHPNNPAPAGRLLLHCLRLELPTLPDAGSNSWKTGSEEA 1120
            + VV KP  +  HR ++       G+ +   ++Q+ R+Q+G+RV L HRLDRG SGCLLL F+       E GK                   L  +LAD  + KTYVA+VRG     GE    +GWF VDRPI+D + V REA T+F FV G D     R  +VLA+P TGR+HQIRRHLNG+SHP++GDS HG+S  NRE         P  RL LH  ++ LP+L     NS   G E A
Sbjct:   78 YLVVAKPPAVACHRSDYIGRKAPDGTPEPPAMVQRIRDQVGRRVNLIHRLDRGASGCLLLAFAGDSRGEDEDGKDGEGGGEDSAERYRDTTRRLIASLADDRAVKTYVALVRGGPFLHGEDLRRRGWFAVDRPIRDARGVEREALTQFRFVAGTDDDCAARASIVLARPRTGRWHQIRRHLNGLSHPILGDSTHGNSRINREW--RSKRGLPGQRLCLHLAKMSLPSL----ENSETAGLEVA 314          
BLAST of mRNA_L-elsbetiae_contig1005.94.1 vs. uniprot
Match: A0A1Z5K7F0_FISSO (PseudoU_synth_2 domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7F0_FISSO)

HSP 1 Score: 162 bits (411), Expect = 1.870e-41
Identity = 96/212 (45.28%), Postives = 134/212 (63.21%), Query Frame = 2
Query:  473 LDILHRNEDFAVVCKPALMHVHRPEF-GSKDKEFV--MQKARNQLGQRVFLPHRLDRGTSGCLLLGFSPEAGK---VLHRALADSTSRKTYVAIVRGSG----EAYLGKGWFTVDRPIKDDKKVLREASTRFLFVRGGDTPD--PRCCLVLAQPSTGRFHQIRRHLNGISHPVVGDSVHGSSSFNRELVGHPNNPAPAGRLLLHCLRLELPT 1072
            + I+ +++D+ VV KP  +  H  E+ GS+ ++ +  +Q+ R  +G R+ L HRLDR  SGCLL+ +  + G    +  +A+A++ + KTY+A+VRG G    E    KGWF VDRPIK+++ VL EAST F FV G    D  PR  LVLA+P TGR+HQIRRHLNG+SHP++GDS HG+S  N+E         P  R  LH  RL+L T
Sbjct:   54 ITIVAKSDDYLVVDKPPSVVCHHSEWTGSRSQQEIPMLQRVRQAVGSRINLVHRLDRVCSGCLLVTYQKDDGDMTAIFSQAMAENAT-KTYIALVRGEGILHGEDLKQKGWFLVDRPIKNERGVLHEASTWFRFVAGQPEVDGQPRASLVLARPRTGRWHQIRRHLNGLSHPILGDSSHGNSKVNQEWRSQ-RGMLPE-RTCLHLARLQLST 262          
BLAST of mRNA_L-elsbetiae_contig1005.94.1 vs. uniprot
Match: R1EHE9_EMIHU (PseudoU_synth_2 domain-containing protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EHE9_EMIHU)

HSP 1 Score: 155 bits (393), Expect = 2.980e-40
Identity = 84/190 (44.21%), Postives = 111/190 (58.42%), Query Frame = 2
Query:  464 SPPLDILHRNEDFAVVCKPALMHVHRPEFGSKDKEFVMQKARNQLGQRVFLPHRLDRGTSGCLLLGFSPEAGKVLHRALADSTSRKTYVAIVRGSGEAYLGKGWFTVDRPIKDDKKVLREASTRFLFVRGGDTPDPR-------------CCLVLAQPSTGRFHQIRRHLNGISHPVVGDSVHGSSSFNR 994
            SP + IL R   F VV KPA + VHR ++  K    ++Q  R+QLG +V   HRLD GTSGCL+     E    L RA A    RKTY+A+ RG+    LG+G   V+RP++DDK VLR A T  + + G D  +                 LV+A+P+TGRFHQIR+HL G+SHP++GD+ HG S  NR
Sbjct:   12 SPSIPILARRPGFCVVAKPAGLVVHRNDWSRKGDVALLQLLRDQLGTQVNPVHRLDAGTSGCLVFAEDSETTAALQRAFASGRVRKTYIAVARGNAMPTLGEG-LVVERPVRDDKGVLRAARTELMCLGGCDGEEVAGEGEAVTGRLNLGASLVVAEPTTGRFHQIRKHLGGLSHPILGDAKHGDSRVNR 200          
BLAST of mRNA_L-elsbetiae_contig1005.94.1 vs. uniprot
Match: A0A1E7F626_9STRA (Pseudouridine synthase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F626_9STRA)

HSP 1 Score: 156 bits (394), Expect = 4.430e-40
Identity = 92/228 (40.35%), Postives = 132/228 (57.89%), Query Frame = 2
Query:  473 LDILHRNEDFAVVCKPALMHVHRPEFG---SKDKEFV--------MQKARNQLGQRVFLPHRLDRGTSGCLLLGFSPE------AGKVLHRALADSTS-----RKTYVAIVRGSG----EAYLGKGWFTVDRPIKDDKKVLREASTRFLFVRGGDTPD---PRCCLVLAQPSTGRFHQIRRHLNGISHPVVGDSVHGSSSFNRELVGHPNNPAPAGRLLLHCLRLELP 1069
            + IL R ++  VV KP+ +  HR ++    ++ KE +        +Q+ R  +G++V L HRLDRG SGCLL  F+        A  ++   + + +S      KTY+AIVRG G      +  +GWF VDRPIKD+   L+ A++ F F+ G D  +   PR  LVLA+  TGR+HQIR+HLNG+SHP++GDS HG S  NRE +   +      R+ LH L+LELP
Sbjct:   12 VSILDRGDNHVVVSKPSAVICHRSDWTGRRNRKKESIITSEEVPMLQRVREAVGEKVNLVHRLDRGASGCLLFSFAKSDKDGGNATAIMQECMTNDSSSTSDTHKTYIAIVRGEGLLKGRDFRQEGWFEVDRPIKDESGNLKNATSYFRFIAGQDDGNGTRPRASLVLARIKTGRWHQIRKHLNGLSHPIIGDSTHGISKTNREWIEKWD--LKRERICLHLLKLELP 237          
BLAST of mRNA_L-elsbetiae_contig1005.94.1 vs. uniprot
Match: B7FYH0_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FYH0_PHATC)

HSP 1 Score: 154 bits (388), Expect = 2.150e-38
Identity = 96/223 (43.05%), Postives = 128/223 (57.40%), Query Frame = 2
Query:  479 ILHRNEDFAVVCKPALMHVHRPEF-GSKDKEF---VMQKARNQLGQR-VFLPHRLDRGTSGCLLLGFS----------PEAGKVLHRALADSTSRKTYVAIVRGSG----EAYLGKGWFTVDRPIKDDKKVLREASTRFLFVRGGDTPD-----PRCCLVLAQPSTGRFHQIRRHLNGISHPVVGDSVHGSSSFNRE---LVGHPNNPAPAGRLLLHCLRLEL 1066
            IL R + + VV KP  +  H  E+ GS+   F   ++Q+ R  +G   V L HRL+ G SGCLLL ++          P     L  ++ ++ S KTY+A+VRG G      +  +GWF VDRPIK++K +L  A+T F FV G D        PR  LVLA+P TGR+HQIRRHLNG+SHP++GD+ HG+S  NRE   L G      PA R  LH  RL+L
Sbjct:   91 ILARTDRYVVVAKPPTVVCHHSEWTGSRSDPFQIPMLQRTREAMGGNCVNLVHRLNWGCSGCLLLTYAADTADAEIYIPNTTATLIASMKETASLKTYLALVRGEGLLQGRDFKQEGWFKVDRPIKNEKGILNNATTWFRFVAGQDNDSGRINQPRASLVLARPETGRWHQIRRHLNGLSHPILGDTSHGNSHVNREWRDLRG-----MPAQRTCLHLARLQL 308          
BLAST of mRNA_L-elsbetiae_contig1005.94.1 vs. uniprot
Match: A0A448Z1P7_9STRA (PseudoU_synth_2 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z1P7_9STRA)

HSP 1 Score: 153 bits (387), Expect = 1.540e-37
Identity = 97/230 (42.17%), Postives = 130/230 (56.52%), Query Frame = 2
Query:  473 LDILHRNEDFAVVCKPALMHVHRPEFGSKDKEF-----------VMQKARNQLGQRVFLPHRLDRGTSGCLLLGF--SPEAG----KVLHRALA-DSTSRKTYVAIVRGSG----EAYLGKGWFTVDRPIKDDKKVLREASTRFLFVRG-----GDTPD-PRCCLVLAQPSTGRFHQIRRHLNGISHPVVGDSVHGSSSFNRELVGHPNNPAPAGRLLLHCLRLELPTLP 1078
            + IL R  +  VV KP  +  HR ++    K+            ++Q+AR  +G+RV L HRLDRG SGCLL+ F  S E G     VL  ++   S+S KTY+A+VRG G      +  +GWF V RPIK++   L+ A++ F F+ G     G   D PR  LVLA+  TGR+HQIR+HLNG+SHP++GDS HG+S  NRE            R  LH L+LELP  P
Sbjct:   97 VSILDRGPNHLVVSKPPSVLCHRSDWSGSGKKRSAKQRGPPEVPMLQRAREAVGERVNLVHRLDRGASGCLLMSFAGSDENGGNATAVLQESMTRTSSSHKTYLALVRGEGILKGRDFRQEGWFEVSRPIKNEAGTLKNATSYFRFIAGQGNENGALEDVPRASLVLARIKTGRWHQIRKHLNGLSHPIIGDSTHGNSKTNREW--RQKWGLEPERTCLHLLKLELPATP 324          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1005.94.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7K6_9PHAE4.910e-11852.78PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
A0A7S2LAN5_9STRA2.770e-4544.64Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S3ZM53_9STRA1.930e-4445.58Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A1Z5J6G5_FISSO9.380e-4347.39PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A7S1FQ02_9STRA5.200e-4243.21Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A1Z5K7F0_FISSO1.870e-4145.28PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
R1EHE9_EMIHU2.980e-4044.21PseudoU_synth_2 domain-containing protein (Fragmen... [more]
A0A1E7F626_9STRA4.430e-4040.35Pseudouridine synthase (Fragment) n=1 Tax=Fragilar... [more]
B7FYH0_PHATC2.150e-3843.05Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A448Z1P7_9STRA1.540e-3742.17PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1005contigL-elsbetiae_contig1005:22457..25714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score376.3
Seed ortholog evalue2.1e-101
Seed eggNOG ortholog2880.D7G7M0
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.pseudouridine synthase activity
EggNOG OGsCOG0564@1,KOG1919@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionRNA pseudouridylate synthase domain-containing protein
Ec32 orthologEc-22_001870.1
Exons5
Model size1871
Cds size1476
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815238.056843-UTR-L-elsbetiae_contig1005:22456..226701622815238.056843-UTR-L-elsbetiae_contig1005:22456..22670Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1005 22457..22670 -
1691682788.6821141-UTR-L-elsbetiae_contig1005:22456..226701691682788.6821141-UTR-L-elsbetiae_contig1005:22456..22670Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1005 22457..22670 -
1622815238.130614-UTR-L-elsbetiae_contig1005:25533..257141622815238.130614-UTR-L-elsbetiae_contig1005:25533..25714Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1005 25534..25714 -
1691682788.791105-UTR-L-elsbetiae_contig1005:25533..257141691682788.791105-UTR-L-elsbetiae_contig1005:25533..25714Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1005 25534..25714 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815238.0702884-CDS-L-elsbetiae_contig1005:22670..234181622815238.0702884-CDS-L-elsbetiae_contig1005:22670..23418Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1005 22671..23418 -
1691682788.6949363-CDS-L-elsbetiae_contig1005:22670..234181691682788.6949363-CDS-L-elsbetiae_contig1005:22670..23418Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1005 22671..23418 -
1622815238.0809464-CDS-L-elsbetiae_contig1005:23719..239461622815238.0809464-CDS-L-elsbetiae_contig1005:23719..23946Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1005 23720..23946 -
1691682788.7145958-CDS-L-elsbetiae_contig1005:23719..239461691682788.7145958-CDS-L-elsbetiae_contig1005:23719..23946Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1005 23720..23946 -
1622815238.0907233-CDS-L-elsbetiae_contig1005:24254..243521622815238.0907233-CDS-L-elsbetiae_contig1005:24254..24352Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1005 24255..24352 -
1691682788.726388-CDS-L-elsbetiae_contig1005:24254..243521691682788.726388-CDS-L-elsbetiae_contig1005:24254..24352Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1005 24255..24352 -
1622815238.1024213-CDS-L-elsbetiae_contig1005:24677..247571622815238.1024213-CDS-L-elsbetiae_contig1005:24677..24757Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1005 24678..24757 -
1691682788.734723-CDS-L-elsbetiae_contig1005:24677..247571691682788.734723-CDS-L-elsbetiae_contig1005:24677..24757Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1005 24678..24757 -
1622815238.116627-CDS-L-elsbetiae_contig1005:25210..255331622815238.116627-CDS-L-elsbetiae_contig1005:25210..25533Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1005 25211..25533 -
1691682788.759211-CDS-L-elsbetiae_contig1005:25210..255331691682788.759211-CDS-L-elsbetiae_contig1005:25210..25533Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1005 25211..25533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1005.94.1prot_L-elsbetiae_contig1005.94.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1005 22671..25533 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1005.94.1

>prot_L-elsbetiae_contig1005.94.1 ID=prot_L-elsbetiae_contig1005.94.1|Name=mRNA_L-elsbetiae_contig1005.94.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=492bp
MRRFRERLLLLPASLMTLCGAFVHPRVSPWLPIERRDCVFSLQASKADAA
ERQHRPADEGDPREKTTSGGGGVATQADALEEGSAMDILTERSPSPPLDI
LHRNEDFAVVCKPALMHVHRPEFGSKDKEFVMQKARNQLGQRVFLPHRLD
RGTSGCLLLGFSPEAGKVLHRALADSTSRKTYVAIVRGSGEAYLGKGWFT
VDRPIKDDKKVLREASTRFLFVRGGDTPDPRCCLVLAQPSTGRFHQIRRH
LNGISHPVVGDSVHGSSSFNRELVGHPNNPAPAGRLLLHCLRLELPTLPD
AGSNSWKTGSEEATADDEQQLEEDRRRRGGDGSDNARRVSEDNGEAHPQG
SDGGGDGGSSFSGSFDSSTPPSEPDKEDSRNNDRGRGGVTSGAVSPGLLH
PARATVPSAVVTQTAGGATLSPSIAGANKAIGEGGRSDEAGGAEVEGMEV
YAEPPDDMLAFLRGMSWWEEGMIQAAERGGQRISSPRRRKQ*
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mRNA from alignment at L-elsbetiae_contig1005:22457..25714-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1005.94.1 ID=mRNA_L-elsbetiae_contig1005.94.1|Name=mRNA_L-elsbetiae_contig1005.94.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3258bp|location=Sequence derived from alignment at L-elsbetiae_contig1005:22457..25714- (Laminarionema elsbetiae ELsaHSoW15)
CCGGGCTCTCTTTCCCTTGGAGATACGTGCGGTGTGTGTGTAGTTCGGTG TGCCACGCGTAGAAGAAAAGCTAGGTTGACAAGTTAAGTGCTTCGTTCTA GGCGAGGCTTGCAGTGTGTGGTGGCATCTGTAGATAGTCTCCACAGACAG CGGTGTGTGAGAGATAGATAGGTATCTACACATGAGGAGGTTTAGAGAGA GGTTGCTGTTGTTGCCAGCTTCTCTGATGACACTTTGCGGCGCCTTCGTC CACCCAAGGGTGTCTCCCTGGCTCCCGATCGAACGCAGAGACTGTGTGTT CAGTTTGCAGGCTTCCAAAGCAGATGCGGCAGAACGCCAACATCGTCCCG CAGATGAAGGCGACCCGCGGGAGAAGACAACCTCCGGAGGCGGGGGCGTG GCAACTCAAGCAGACGCTCTAGAGGAGGGAAGCGCGATGGACATACTAAC AGAGAGGAGCCCATCGCCCCCTCTGGATATCCTCCACCGAAACGAAGACT TCGCGTAAGGAACGCATCGCATAGTCTAGTGTGACGCAGCCGAAGTTGAT TATCTAGACTAGATACATGCTCACTCACACAAAATACTGGAGTACAGCAG TGACCCCGGTTGGTTCTAGTTGTACAGACAAATGCACTGCAAAGTGCAGT ACCTCTAAGTACACCGTAGGTGTAGTACACGTCTCCACATGGGGGGACTG TCGCCGAAATAAATGGGAAGGACACACACACACACACACAGACCTTCCCG GCTATCATTTCTCGCCTCGCTGCCGCCTTTGTTTTGTAGGTAGTCATCCT CTCCACTTCTGCTACTAGCGCTTCCTCCCTCGTTAGTCGTGGCTGTGAAC TTGGAAAATGTATGGTACATATGTATCTAGATCTAGGCTAGTGTATCTAT GCAGGCTTTACAATACCGTTCATGCGTGGCCGGTGCCGGTGTCGATTTAT AATTCAGGGTGGTGTGTAAGCCGGCGCTGATGCACGTCCACCGCCCGGAG TTCGGCTCGAAGGACAAAGAGTTCGTCATGCAAAAAGGTAGGTAGTGTAG CCCGCGAGGTGGAATGCTGAAACCGGCCGTGTTCATCCGTTAGCACCCCA CGGGCTGTCTGATGGAGTAGACTACGTAGATACATCGCAAAAACCCGGTA GCATCTTCGACTGCAGCAGATGCTATAGACATCGCTGCTGCTGTGCCACG AACACGGCTTGGGCCTCTCCTATATGCCGACCAACCGCCGCCCAGCGGTC ATTCGCTGAACTGGTATATCTCGTATCTGTGCTTCGTACTACTGACTGTA GTCTACCAATGTGTTTCTGCGTGATGGACACCTCTGTACTGGCATACACG TCCCTCCTCCAGCTCGAAACCAGCTTGGGCAGCGAGTCTTCCTACCGCAC CGCCTGGACCGTGGCACGTCCGGGTGCCTTCTTTTGGGCTTTAGCCCGGA GGCAGGCAAGGTGTGGCACAGCGCGTGCGGGTCGCCACCGTTGTTCAGGG TCGGAGTACACCTTCCGGCCCCTCTCGTTCAGTGCGGGTTTACCCATGTC GAGACGAGCGTGTCCCGAAACCACCCGGTGTTCCACCGCTTCCGTCGCTT GCCGCGCGTGCGTGCCCTTGCAGCCCTCCCCCAAACACCTGCCTCGCCAA TCTGTTGCCAAGCGATATTCGAGACGCCGCCGCGGCCGCACATGATTTCC AAGAAATTGAACACCATTTTTTTTCGCGTGCCCGTGACCGTAACCGAACG GTTCCTGACCACATATAGGTGCTCCACCGAGCGCTTGCCGACTCGACTTC CAGGAAGACTTACGTCGCGATCGTCAGAGGGAGCGGCGAGGCGTACCTCG GCAAGGGGTGGTTCACAGTCGATAGGCCCATCAAAGACGACAAGAAGGTT CTGAGGGAGGCGTCAACGCGCTTCCTCTTTGTCCGGGGAGGGGATACCCC CGACCCTCGGTGCTGTCTCGTTCTCGCTCAGCCTTCCACTGGACGGTGAG GGAGAAACTTACCACTCATTTCGTGAGACCATTTCGGGCTTGTTGCCTAC AGTGTTCAGACGGGGGGCGCGTCTAGCGCGCAGGAGAGAGCAGTAGAGAA CAGCAGGCGGCTTGTAGGGCCTTGTCTCGACGCGCAAGACAGGAGAGGCC TCCTGCCTCCGCCATCAACACCGCTCGCTTCTGAAAAGGCATTCGATCTC TCCGCGATGCCTCGTTTTGCATTAGTTCCGTCATGCATTTTGTCCCGGGG TGTGTCCTCGCTTGCGTCTCCTTTTTGTGCCAATATACAAACACAGGTTT CACCAGATCAGGCGACATCTGAATGGGATCAGCCACCCCGTCGTGGGCGA CTCCGTGCACGGTAGCAGCAGCTTTAACCGGGAGCTGGTGGGCCACCCCA ACAACCCGGCGCCCGCCGGACGATTGCTGCTCCACTGCCTTCGGCTAGAG CTGCCGACATTGCCGGATGCGGGGTCGAATTCTTGGAAAACAGGCTCAGA AGAAGCAACAGCGGACGACGAACAACAGCTGGAGGAAGACAGGCGCAGAA GAGGGGGCGACGGCTCTGATAACGCCCGTCGGGTGAGTGAGGACAACGGG GAAGCGCACCCGCAGGGTAGTGACGGCGGCGGCGACGGCGGTAGTTCCTT CTCGGGTTCATTTGATAGTTCGACTCCTCCCTCGGAACCCGACAAGGAGG ATTCCAGGAACAACGACCGTGGGCGTGGCGGCGTCACTTCGGGGGCCGTT TCACCCGGACTGCTGCACCCGGCTAGGGCAACCGTCCCGTCTGCTGTCGT CACTCAGACGGCGGGCGGTGCTACTCTCTCGCCGTCAATCGCGGGAGCGA ACAAGGCTATCGGGGAAGGTGGTCGTAGCGATGAAGCTGGGGGTGCAGAA GTCGAGGGGATGGAGGTCTACGCCGAGCCTCCAGATGACATGTTAGCGTT CTTGCGAGGCATGTCTTGGTGGGAGGAGGGTATGATCCAGGCGGCAGAGC GTGGTGGACAACGAATATCATCGCCACGGCGACGAAAACAGTAGATTTGT CGTGATTTTGTCGTGATTTTTGCTCCGCTTGGTGGGCTGCCTATTGGCAT TGGATAGGAGGAAGGTGGGGCAAAAAAAGAAGAAAATGCCCCAGTGTTCA CCTCCTCCTGTGTGACCCCGGTTGGTTCTAGTTGTACAGACAAATGCACT GCAAAGTGTAGTACCTCTTAAGTACACCGCAAGGTGTAGTACACGTCTCC ACTTGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1005:22457..25714-

>mRNA_L-elsbetiae_contig1005.94.1 ID=mRNA_L-elsbetiae_contig1005.94.1|Name=mRNA_L-elsbetiae_contig1005.94.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2952bp|location=Sequence derived from alignment at L-elsbetiae_contig1005:22457..25714- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGAGGTTTAGAGAGAGGTTGCTGTTGTTGCCAGCTTCTCTGATGAC
ACTTTGCGGCGCCTTCGTCCACCCAAGGGTGTCTCCCTGGCTCCCGATCG
AACGCAGAGACTGTGTGTTCAGTTTGCAGGCTTCCAAAGCAGATGCGGCA
GAACGCCAACATCGTCCCGCAGATGAAGGCGACCCGCGGGAGAAGACAAC
CTCCGGAGGCGGGGGCGTGGCAACTCAAGCAGACGCTCTAGAGGAGGGAA
GCGCGATGGACATACTAACAGAGAGGAGCCCATCGCCCCCTCTGGATATC
CTCCACCGAAACGAAGACTTCGCATGAGGAGGTTTAGAGAGAGGTTGCTG
TTGTTGCCAGCTTCTCTGATGACACTTTGCGGCGCCTTCGTCCACCCAAG
GGTGTCTCCCTGGCTCCCGATCGAACGCAGAGACTGTGTGTTCAGTTTGC
AGGCTTCCAAAGCAGATGCGGCAGAACGCCAACATCGTCCCGCAGATGAA
GGCGACCCGCGGGAGAAGACAACCTCCGGAGGCGGGGGCGTGGCAACTCA
AGCAGACGCTCTAGAGGAGGGAAGCGCGATGGACATACTAACAGAGAGGA
GCCCATCGCCCCCTCTGGATATCCTCCACCGAAACGAAGACTTCGCGGTG
GTGTGTAAGCCGGCGCTGATGCACGTCCACCGCCCGGAGTTCGGCTCGAA
GGACAAAGAGTTCGTCATGCAAAAAGGGTGGTGTGTAAGCCGGCGCTGAT
GCACGTCCACCGCCCGGAGTTCGGCTCGAAGGACAAAGAGTTCGTCATGC
AAAAAGCTCGAAACCAGCTTGGGCAGCGAGTCTTCCTACCGCACCGCCTG
GACCGTGGCACGTCCGGGTGCCTTCTTTTGGGCTTTAGCCCGGAGGCAGG
CAAGCTCGAAACCAGCTTGGGCAGCGAGTCTTCCTACCGCACCGCCTGGA
CCGTGGCACGTCCGGGTGCCTTCTTTTGGGCTTTAGCCCGGAGGCAGGCA
AGGTGCTCCACCGAGCGCTTGCCGACTCGACTTCCAGGAAGACTTACGTC
GCGATCGTCAGAGGGAGCGGCGAGGCGTACCTCGGCAAGGGGTGGTTCAC
AGTCGATAGGCCCATCAAAGACGACAAGAAGGTTCTGAGGGAGGCGTCAA
CGCGCTTCCTCTTTGTCCGGGGAGGGGATACCCCCGACCCTCGGTGCTGT
CTCGTTCTCGCTCAGCCTTCCACTGGACGGTGCTCCACCGAGCGCTTGCC
GACTCGACTTCCAGGAAGACTTACGTCGCGATCGTCAGAGGGAGCGGCGA
GGCGTACCTCGGCAAGGGGTGGTTCACAGTCGATAGGCCCATCAAAGACG
ACAAGAAGGTTCTGAGGGAGGCGTCAACGCGCTTCCTCTTTGTCCGGGGA
GGGGATACCCCCGACCCTCGGTGCTGTCTCGTTCTCGCTCAGCCTTCCAC
TGGACGGTTTCACCAGATCAGGCGACATCTGAATGGGATCAGCCACCCCG
TCGTGGGCGACTCCGTGCACGGTAGCAGCAGCTTTAACCGGGAGCTGGTG
GGCCACCCCAACAACCCGGCGCCCGCCGGACGATTGCTGCTCCACTGCCT
TCGGCTAGAGCTGCCGACATTGCCGGATGCGGGGTCGAATTCTTGGAAAA
CAGGCTCAGAAGAAGCAACAGCGGACGACGAACAACAGCTGGAGGAAGAC
AGGCGCAGAAGAGGGGGCGACGGCTCTGATAACGCCCGTCGGGTGAGTGA
GGACAACGGGGAAGCGCACCCGCAGGGTAGTGACGGCGGCGGCGACGGCG
GTAGTTCCTTCTCGGGTTCATTTGATAGTTCGACTCCTCCCTCGGAACCC
GACAAGGAGGATTCCAGGAACAACGACCGTGGGCGTGGCGGCGTCACTTC
GGGGGCCGTTTCACCCGGACTGCTGCACCCGGCTAGGGCAACCGTCCCGT
CTGCTGTCGTCACTCAGACGGCGGGCGGTGCTACTCTCTCGCCGTCAATC
GCGGGAGCGAACAAGGCTATCGGGGAAGGTGGTCGTAGCGATGAAGCTGG
GGGTGCAGAAGTCGAGGGGATGGAGGTCTACGCCGAGCCTCCAGATGACA
TGTTAGCGTTCTTGCGAGGCATGTCTTGGTGGGAGGAGGGTATGATCCAG
GCGGCAGAGCGTGGTGGACAACGAATATCATCGCCACGGCGACGAAAACA
GTAGGTTTCACCAGATCAGGCGACATCTGAATGGGATCAGCCACCCCGTC
GTGGGCGACTCCGTGCACGGTAGCAGCAGCTTTAACCGGGAGCTGGTGGG
CCACCCCAACAACCCGGCGCCCGCCGGACGATTGCTGCTCCACTGCCTTC
GGCTAGAGCTGCCGACATTGCCGGATGCGGGGTCGAATTCTTGGAAAACA
GGCTCAGAAGAAGCAACAGCGGACGACGAACAACAGCTGGAGGAAGACAG
GCGCAGAAGAGGGGGCGACGGCTCTGATAACGCCCGTCGGGTGAGTGAGG
ACAACGGGGAAGCGCACCCGCAGGGTAGTGACGGCGGCGGCGACGGCGGT
AGTTCCTTCTCGGGTTCATTTGATAGTTCGACTCCTCCCTCGGAACCCGA
CAAGGAGGATTCCAGGAACAACGACCGTGGGCGTGGCGGCGTCACTTCGG
GGGCCGTTTCACCCGGACTGCTGCACCCGGCTAGGGCAACCGTCCCGTCT
GCTGTCGTCACTCAGACGGCGGGCGGTGCTACTCTCTCGCCGTCAATCGC
GGGAGCGAACAAGGCTATCGGGGAAGGTGGTCGTAGCGATGAAGCTGGGG
GTGCAGAAGTCGAGGGGATGGAGGTCTACGCCGAGCCTCCAGATGACATG
TTAGCGTTCTTGCGAGGCATGTCTTGGTGGGAGGAGGGTATGATCCAGGC
GGCAGAGCGTGGTGGACAACGAATATCATCGCCACGGCGACGAAAACAGT
AG
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