mRNA_L-elsbetiae_contig1100.908.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1100.908.1
Unique NamemRNA_L-elsbetiae_contig1100.908.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1100.908.1 vs. uniprot
Match: A0A6H5KHT0_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KHT0_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 5.590e-41
Identity = 83/103 (80.58%), Postives = 90/103 (87.38%), Query Frame = 1
Query:    1 LDLTRRSRVVLVGRNGSGKSTLLKLIAAATEAGGG-LGA---GEEGLAPTRGTIVRNHNARVGLFTQHHAERLRMSDSPLQHMLRVFSGVEDVNEAELRRQLG 297
            +D TRRSRVVLVGRNGSGKSTLL+LIAAATEAG G LGA   G++ LAPTRG+IVRN NARVGLFTQHHAERL MSDSPLQHM R+F  VE +NEAELRRQLG
Sbjct:  549 MDFTRRSRVVLVGRNGSGKSTLLRLIAAATEAGSGALGAATGGDDNLAPTRGSIVRNFNARVGLFTQHHAERLLMSDSPLQHMQRIFGSVEGINEAELRRQLG 651          
BLAST of mRNA_L-elsbetiae_contig1100.908.1 vs. uniprot
Match: D7FMB9_ECTSI (ABC transporter related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMB9_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 1.550e-27
Identity = 65/107 (60.75%), Postives = 71/107 (66.36%), Query Frame = 1
Query:    1 LDLTRRSRVVLVGRNGSGKSTLLKLIAAATEAGGGLGAG-----EEGLAPTRGTIVRNHNARVGLFTQHHAERLRMSDSPLQHMLRVFSGVEDVNEAELRRQLGEWV 306
            +D TRRSRVVLVGRNGSGKSTLL+LIAAATEAG G   G      +    TR    +   AR     QHH E L MSDSPLQ M R+F  VE +NEAELRRQLGE V
Sbjct:    1 MDFTRRSRVVLVGRNGSGKSTLLRLIAAATEAGSGAPVGCDRGRRQPCPDTRENRPKFQRAR----RQHHVETLLMSDSPLQQMRRIFGNVEGINEAELRRQLGELV 103          
BLAST of mRNA_L-elsbetiae_contig1100.908.1 vs. uniprot
Match: A0A7R9W9T3_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W9T3_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.050e-9
Identity = 40/95 (42.11%), Postives = 58/95 (61.05%), Query Frame = 1
Query:   19 SRVVLVGRNGSGKSTLLKLIAAATEAGGGLGAGEEGLAPTRGTIVRNHNARVGLFTQHHAERLRMSDSPLQHMLRVFSGVEDVNEAELRRQLGEW 303
            SR+ +VG NG+GKSTLL L+            GE  L PTRG + +N   R+G+++QH A+RL M  +P++H+L    G ED   A +R QLG++
Sbjct:  372 SRICIVGNNGAGKSTLLNLLT-----------GE--LKPTRGEVRKNPRLRIGIYSQHFADRLPMEKTPVEHLLDRCEG-ED--RAYVRGQLGKF 450          
BLAST of mRNA_L-elsbetiae_contig1100.908.1 vs. uniprot
Match: A0A4P7WDU9_9PROT (ABC-F family ATP-binding cassette domain-containing protein n=1 Tax=Acetobacteraceae bacterium TaxID=1909293 RepID=A0A4P7WDU9_9PROT)

HSP 1 Score: 60.8 bits (146), Expect = 1.270e-8
Identity = 38/94 (40.43%), Postives = 50/94 (53.19%), Query Frame = 1
Query:   22 RVVLVGRNGSGKSTLLKLIAAATEAGGGLGAGEEGLAPTRGTIVRNHNARVGLFTQHHAERLRMSDSPLQHMLRVFSGVEDVNEAELRRQLGEW 303
            R+ L+GRNG GKST  KL++           GE  L P +G  V +   +VG F QH  E L ++D+PL HM+RV S   D N    R QL  +
Sbjct:  343 RIALLGRNGEGKSTFAKLLS-----------GE--LLPLQGEFVHSSKLQVGYFAQHQQEALILTDTPLDHMMRVLS---DANITVARAQLARF 420          
BLAST of mRNA_L-elsbetiae_contig1100.908.1 vs. uniprot
Match: UPI00106AB0A7 (ATP-binding cassette sub-family F member 1-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106AB0A7)

HSP 1 Score: 60.8 bits (146), Expect = 1.270e-8
Identity = 36/101 (35.64%), Postives = 61/101 (60.40%), Query Frame = 1
Query:    1 LDLTRRSRVVLVGRNGSGKSTLLKLIAAATEAGGGLGAGEEGLAPTRGTIVRNHNARVGLFTQHHAERLRMSDSPLQHMLRVFSGVEDVNEAELRRQLGEW 303
            +DL+  SRV +VG NG GKST LKL+            GE  L  T G +++NH  R+G ++QH A++L++ +S ++++ R ++    +N  E R+ LG++
Sbjct:  483 IDLS--SRVAVVGNNGVGKSTFLKLLI-----------GELNL--THGELIKNHRVRIGFYSQHAADQLKLEESSVEYLQRKYN----LNYQESRKTLGQY 564          
BLAST of mRNA_L-elsbetiae_contig1100.908.1 vs. uniprot
Match: A0A0D3DD37_BRAOL (Uncharacterized protein n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=A0A0D3DD37_BRAOL)

HSP 1 Score: 59.7 bits (143), Expect = 3.170e-8
Identity = 35/101 (34.65%), Postives = 58/101 (57.43%), Query Frame = 1
Query:    1 LDLTRRSRVVLVGRNGSGKSTLLKLIAAATEAGGGLGAGEEGLAPTRGTIVRNHNARVGLFTQHHAERLRMSDSPLQHMLRVFSGVEDVNEAELRRQLGEW 303
            L +   +RVV+VG NG+GKSTLL L+A               L PT G + R+   R+G ++QH  ++L+M ++P+ ++LR+    E   +A +R +LG +
Sbjct:  345 LGIDMGTRVVIVGPNGAGKSTLLNLVAG-------------DLVPTEGEVRRSQTLRIGRYSQHFLDQLKMEETPVHYLLRLHPDQEGHVKA-VRAKLGRF 431          
BLAST of mRNA_L-elsbetiae_contig1100.908.1 vs. uniprot
Match: UPI000D3E779F (ABC transporter ATP-binding protein n=1 Tax=Dongshaea marina TaxID=2047966 RepID=UPI000D3E779F)

HSP 1 Score: 57.4 bits (137), Expect = 2.090e-7
Identity = 37/93 (39.78%), Postives = 51/93 (54.84%), Query Frame = 1
Query:   19 SRVVLVGRNGSGKSTLLKLIAAATEAGGGLGAGEEGLAPTRGTIVRNHNARVGLFTQHHAERLRMSDSPLQHMLRVFSGVEDVNEAELRRQLG 297
            SR+ L+GRNG+GKSTL+KL+A           GE  LAP  G +  +   R+G F+QH  E LR+   PLQ +  +     +  E +LR  LG
Sbjct:  340 SRIGLLGRNGAGKSTLIKLLA-----------GE--LAPQNGELALSPGVRIGYFSQHQLETLRVDMGPLQQLALLAP---NATEQQLRNYLG 416          
BLAST of mRNA_L-elsbetiae_contig1100.908.1 vs. uniprot
Match: UPI001C8077CC (ABC transporter ATP-binding protein arb1 n=1 Tax=Scheffersomyces spartinae TaxID=45513 RepID=UPI001C8077CC)

HSP 1 Score: 57.0 bits (136), Expect = 2.850e-7
Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 1
Query:   19 SRVVLVGRNGSGKSTLLKLIAAATEAGGGLGAGEEGLAPTRGTIVRNHNARVGLFTQHHAERLRMSDSPLQHMLRVFSGVEDVNEAELRRQLGEW 303
            SRV LVG NG GKSTLLKL         G+      L P +G ++R+ + ++G+++QH A++L ++ SPL+ + + FS + + +    R+QLG +
Sbjct:  421 SRVALVGPNGIGKSTLLKLFQ-------GI------LTPQQGRVIRHTHIKLGVYSQHSADQLDLTMSPLEFVRQKFSNISE-DYQYWRQQLGRY 501          
BLAST of mRNA_L-elsbetiae_contig1100.908.1 vs. uniprot
Match: A0A7S3Q841_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q841_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.910e-7
Identity = 33/95 (34.74%), Postives = 53/95 (55.79%), Query Frame = 1
Query:   19 SRVVLVGRNGSGKSTLLKLIAAATEAGGGLGAGEEGLAPTRGTIVRNHNARVGLFTQHHAERLRMSDSPLQHMLRVFSGVEDVNEAELRRQLGEW 303
            SR+ ++G NG+GKSTLL LI              + L P  G++ RN   R+G+FTQH A++  +  S +++ML +F    D  + E+R  +G +
Sbjct:  604 SRIGILGANGAGKSTLLNLIT-------------DKLQPLSGSVSRNGRLRIGMFTQHSADKFDLRLSSVENMLALFP---DATDQEMRSFIGRF 682          
BLAST of mRNA_L-elsbetiae_contig1100.908.1 vs. uniprot
Match: B3RNB5_TRIAD (Uncharacterized protein (Fragment) n=2 Tax=Trichoplax TaxID=10227 RepID=B3RNB5_TRIAD)

HSP 1 Score: 55.8 bits (133), Expect = 7.200e-7
Identity = 33/95 (34.74%), Postives = 54/95 (56.84%), Query Frame = 1
Query:   19 SRVVLVGRNGSGKSTLLKLIAAATEAGGGLGAGEEGLAPTRGTIVRNHNARVGLFTQHHAERLRMSDSPLQHMLRVFSGVEDVNEAELRRQLGEW 303
            SRV +VG NG GKST L L+         +G     L PT G + RN   R+G++ QH A++L ++++P++++ R+F    D+N    R+ L  +
Sbjct:  375 SRVAIVGPNGVGKSTFLNLL---------IG----NLTPTDGEVRRNPRLRIGVYNQHAADQLNLTETPVEYLNRLF----DMNYQHSRQLLARY 452          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1100.908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5KHT0_9PHAE5.590e-4180.58ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
D7FMB9_ECTSI1.550e-2760.75ABC transporter related n=1 Tax=Ectocarpus silicul... [more]
A0A7R9W9T3_9STRA1.050e-942.11Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A4P7WDU9_9PROT1.270e-840.43ABC-F family ATP-binding cassette domain-containin... [more]
UPI00106AB0A71.270e-835.64ATP-binding cassette sub-family F member 1-like n=... [more]
A0A0D3DD37_BRAOL3.170e-834.65Uncharacterized protein n=1 Tax=Brassica oleracea ... [more]
UPI000D3E779F2.090e-739.78ABC transporter ATP-binding protein n=1 Tax=Dongsh... [more]
UPI001C8077CC2.850e-736.84ABC transporter ATP-binding protein arb1 n=1 Tax=S... [more]
A0A7S3Q841_9STRA2.910e-734.74Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
B3RNB5_TRIAD7.200e-734.74Uncharacterized protein (Fragment) n=2 Tax=Trichop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1100contigL-elsbetiae_contig1100:28177..28878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score150.2
Seed ortholog evalue5.2e-34
Seed eggNOG ortholog2880.D7G0X5
KEGG koko:K06158
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity
EggNOG OGsCOG0488@1,KOG0062@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Ec32 ortholog descriptionABC transporter-like
Ec32 orthologEc-17_003550.1
Exons2
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815316.649805-CDS-L-elsbetiae_contig1100:28176..282931622815316.649805-CDS-L-elsbetiae_contig1100:28176..28293Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1100 28177..28293 -
1691682834.4114964-CDS-L-elsbetiae_contig1100:28176..282931691682834.4114964-CDS-L-elsbetiae_contig1100:28176..28293Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1100 28177..28293 -
1622815316.6615603-CDS-L-elsbetiae_contig1100:28689..288781622815316.6615603-CDS-L-elsbetiae_contig1100:28689..28878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1100 28690..28878 -
1691682834.4216309-CDS-L-elsbetiae_contig1100:28689..288781691682834.4216309-CDS-L-elsbetiae_contig1100:28689..28878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1100 28690..28878 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1100.908.1prot_L-elsbetiae_contig1100.908.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1100 28177..28878 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1100.908.1

>prot_L-elsbetiae_contig1100.908.1 ID=prot_L-elsbetiae_contig1100.908.1|Name=mRNA_L-elsbetiae_contig1100.908.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
LDLTRRSRVVLVGRNGSGKSTLLKLIAAATEAGGGLGAGEEGLAPTRGTI
VRNHNARVGLFTQHHAERLRMSDSPLQHMLRVFSGVEDVNEAELRRQLGE
WV
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mRNA from alignment at L-elsbetiae_contig1100:28177..28878-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1100.908.1 ID=mRNA_L-elsbetiae_contig1100.908.1|Name=mRNA_L-elsbetiae_contig1100.908.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig1100:28177..28878- (Laminarionema elsbetiae ELsaHSoW15)
CTCGACTTGACACGCAGGAGCAGGGTGGTGCTGGTGGGCCGCAACGGGTC CGGTAAGAGCACCCTCCTGAAGCTCATCGCTGCTGCCACCGAAGCCGGAG GGGGGTTGGGGGCCGGGGAGGAAGGGCTCGCCCCTACCAGGGGCACCATC GTGCGGAACCACAACGCGCGCGTTGGGCTCTTTACCCAGGTGCGGTTTGT TGACGGGGTGCAAACCGAGGCAGAGGGGAGAACAAGGGAAAGGGAACGAG AAATGTGGGCGGGGGGTAGGTGAAGCGTTATTTTTTACATATCCAGAGCA GTTGTTTGCCAAGCTGTTTCACACCTGCCGAGTGCGTGTTTCGACTCATT TGTTGATATCCCGGAGATGAACAAGCTGTTTGACCGCTTGCCGTACAAGC ATCAGACATGCGCACGGAGCGCGGGGTGCTTGCTTTGCTACGCGTCGCGT GTTATCGCTTGTGTTACTGTTCCTCTCTTCCTTTGTTACTTCGTCCTGTC TGTATATATATATATATCTATATGCCGTGCGTGTCTACAGCCTTTTTTAT TTTTGACGCGCCTCTGCCTTCTTTGCCTTGCTTAGCACCACGCGGAGAGG CTGCGCATGTCAGACAGCCCGTTGCAGCACATGCTGCGGGTGTTCAGCGG CGTGGAAGACGTCAACGAGGCTGAGCTGCGCCGCCAGCTGGGTGAGTGGG TC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1100:28177..28878-

>mRNA_L-elsbetiae_contig1100.908.1 ID=mRNA_L-elsbetiae_contig1100.908.1|Name=mRNA_L-elsbetiae_contig1100.908.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig1100:28177..28878- (Laminarionema elsbetiae ELsaHSoW15)
CTCGACTTGACACGCAGGAGCAGGGTGGTGCTGGTGGGCCGCAACGGGTC
CGGTAAGAGCACCCTCCTGAAGCTCATCGCTGCTGCCACCGAAGCCGGAG
GGGGGTTGGGGGCCGGGGAGGAAGGGCTCGCCCCTACCAGGGGCACCATC
GTGCGGAACCACAACGCGCGCGTTGGGCTCTTTACCCAGCTCGACTTGAC
ACGCAGGAGCAGGGTGGTGCTGGTGGGCCGCAACGGGTCCGGTAAGAGCA
CCCTCCTGAAGCTCATCGCTGCTGCCACCGAAGCCGGAGGGGGGTTGGGG
GCCGGGGAGGAAGGGCTCGCCCCTACCAGGGGCACCATCGTGCGGAACCA
CAACGCGCGCGTTGGGCTCTTTACCCAGCACCACGCGGAGAGGCTGCGCA
TGTCAGACAGCCCGTTGCAGCACATGCTGCGGGTGTTCAGCGGCGTGGAA
GACGTCAACGAGGCTGAGCTGCGCCGCCAGCTGGGTGAGTGGGTCCACCA
CGCGGAGAGGCTGCGCATGTCAGACAGCCCGTTGCAGCACATGCTGCGGG
TGTTCAGCGGCGTGGAAGACGTCAACGAGGCTGAGCTGCGCCGCCAGCTG
GGTGAGTGGGTC
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