mRNA_L-elsbetiae_contig1100.908.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1100.908.1 vs. uniprot
Match: A0A6H5KHT0_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KHT0_9PHAE) HSP 1 Score: 152 bits (385), Expect = 5.590e-41 Identity = 83/103 (80.58%), Postives = 90/103 (87.38%), Query Frame = 1 Query: 1 LDLTRRSRVVLVGRNGSGKSTLLKLIAAATEAGGG-LGA---GEEGLAPTRGTIVRNHNARVGLFTQHHAERLRMSDSPLQHMLRVFSGVEDVNEAELRRQLG 297 +D TRRSRVVLVGRNGSGKSTLL+LIAAATEAG G LGA G++ LAPTRG+IVRN NARVGLFTQHHAERL MSDSPLQHM R+F VE +NEAELRRQLG Sbjct: 549 MDFTRRSRVVLVGRNGSGKSTLLRLIAAATEAGSGALGAATGGDDNLAPTRGSIVRNFNARVGLFTQHHAERLLMSDSPLQHMQRIFGSVEGINEAELRRQLG 651
BLAST of mRNA_L-elsbetiae_contig1100.908.1 vs. uniprot
Match: D7FMB9_ECTSI (ABC transporter related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMB9_ECTSI) HSP 1 Score: 105 bits (263), Expect = 1.550e-27 Identity = 65/107 (60.75%), Postives = 71/107 (66.36%), Query Frame = 1 Query: 1 LDLTRRSRVVLVGRNGSGKSTLLKLIAAATEAGGGLGAG-----EEGLAPTRGTIVRNHNARVGLFTQHHAERLRMSDSPLQHMLRVFSGVEDVNEAELRRQLGEWV 306 +D TRRSRVVLVGRNGSGKSTLL+LIAAATEAG G G + TR + AR QHH E L MSDSPLQ M R+F VE +NEAELRRQLGE V Sbjct: 1 MDFTRRSRVVLVGRNGSGKSTLLRLIAAATEAGSGAPVGCDRGRRQPCPDTRENRPKFQRAR----RQHHVETLLMSDSPLQQMRRIFGNVEGINEAELRRQLGELV 103
BLAST of mRNA_L-elsbetiae_contig1100.908.1 vs. uniprot
Match: A0A7R9W9T3_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W9T3_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 1.050e-9 Identity = 40/95 (42.11%), Postives = 58/95 (61.05%), Query Frame = 1 Query: 19 SRVVLVGRNGSGKSTLLKLIAAATEAGGGLGAGEEGLAPTRGTIVRNHNARVGLFTQHHAERLRMSDSPLQHMLRVFSGVEDVNEAELRRQLGEW 303 SR+ +VG NG+GKSTLL L+ GE L PTRG + +N R+G+++QH A+RL M +P++H+L G ED A +R QLG++ Sbjct: 372 SRICIVGNNGAGKSTLLNLLT-----------GE--LKPTRGEVRKNPRLRIGIYSQHFADRLPMEKTPVEHLLDRCEG-ED--RAYVRGQLGKF 450
BLAST of mRNA_L-elsbetiae_contig1100.908.1 vs. uniprot
Match: A0A4P7WDU9_9PROT (ABC-F family ATP-binding cassette domain-containing protein n=1 Tax=Acetobacteraceae bacterium TaxID=1909293 RepID=A0A4P7WDU9_9PROT) HSP 1 Score: 60.8 bits (146), Expect = 1.270e-8 Identity = 38/94 (40.43%), Postives = 50/94 (53.19%), Query Frame = 1 Query: 22 RVVLVGRNGSGKSTLLKLIAAATEAGGGLGAGEEGLAPTRGTIVRNHNARVGLFTQHHAERLRMSDSPLQHMLRVFSGVEDVNEAELRRQLGEW 303 R+ L+GRNG GKST KL++ GE L P +G V + +VG F QH E L ++D+PL HM+RV S D N R QL + Sbjct: 343 RIALLGRNGEGKSTFAKLLS-----------GE--LLPLQGEFVHSSKLQVGYFAQHQQEALILTDTPLDHMMRVLS---DANITVARAQLARF 420
BLAST of mRNA_L-elsbetiae_contig1100.908.1 vs. uniprot
Match: UPI00106AB0A7 (ATP-binding cassette sub-family F member 1-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106AB0A7) HSP 1 Score: 60.8 bits (146), Expect = 1.270e-8 Identity = 36/101 (35.64%), Postives = 61/101 (60.40%), Query Frame = 1 Query: 1 LDLTRRSRVVLVGRNGSGKSTLLKLIAAATEAGGGLGAGEEGLAPTRGTIVRNHNARVGLFTQHHAERLRMSDSPLQHMLRVFSGVEDVNEAELRRQLGEW 303 +DL+ SRV +VG NG GKST LKL+ GE L T G +++NH R+G ++QH A++L++ +S ++++ R ++ +N E R+ LG++ Sbjct: 483 IDLS--SRVAVVGNNGVGKSTFLKLLI-----------GELNL--THGELIKNHRVRIGFYSQHAADQLKLEESSVEYLQRKYN----LNYQESRKTLGQY 564
BLAST of mRNA_L-elsbetiae_contig1100.908.1 vs. uniprot
Match: A0A0D3DD37_BRAOL (Uncharacterized protein n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=A0A0D3DD37_BRAOL) HSP 1 Score: 59.7 bits (143), Expect = 3.170e-8 Identity = 35/101 (34.65%), Postives = 58/101 (57.43%), Query Frame = 1 Query: 1 LDLTRRSRVVLVGRNGSGKSTLLKLIAAATEAGGGLGAGEEGLAPTRGTIVRNHNARVGLFTQHHAERLRMSDSPLQHMLRVFSGVEDVNEAELRRQLGEW 303 L + +RVV+VG NG+GKSTLL L+A L PT G + R+ R+G ++QH ++L+M ++P+ ++LR+ E +A +R +LG + Sbjct: 345 LGIDMGTRVVIVGPNGAGKSTLLNLVAG-------------DLVPTEGEVRRSQTLRIGRYSQHFLDQLKMEETPVHYLLRLHPDQEGHVKA-VRAKLGRF 431
BLAST of mRNA_L-elsbetiae_contig1100.908.1 vs. uniprot
Match: UPI000D3E779F (ABC transporter ATP-binding protein n=1 Tax=Dongshaea marina TaxID=2047966 RepID=UPI000D3E779F) HSP 1 Score: 57.4 bits (137), Expect = 2.090e-7 Identity = 37/93 (39.78%), Postives = 51/93 (54.84%), Query Frame = 1 Query: 19 SRVVLVGRNGSGKSTLLKLIAAATEAGGGLGAGEEGLAPTRGTIVRNHNARVGLFTQHHAERLRMSDSPLQHMLRVFSGVEDVNEAELRRQLG 297 SR+ L+GRNG+GKSTL+KL+A GE LAP G + + R+G F+QH E LR+ PLQ + + + E +LR LG Sbjct: 340 SRIGLLGRNGAGKSTLIKLLA-----------GE--LAPQNGELALSPGVRIGYFSQHQLETLRVDMGPLQQLALLAP---NATEQQLRNYLG 416
BLAST of mRNA_L-elsbetiae_contig1100.908.1 vs. uniprot
Match: UPI001C8077CC (ABC transporter ATP-binding protein arb1 n=1 Tax=Scheffersomyces spartinae TaxID=45513 RepID=UPI001C8077CC) HSP 1 Score: 57.0 bits (136), Expect = 2.850e-7 Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 1 Query: 19 SRVVLVGRNGSGKSTLLKLIAAATEAGGGLGAGEEGLAPTRGTIVRNHNARVGLFTQHHAERLRMSDSPLQHMLRVFSGVEDVNEAELRRQLGEW 303 SRV LVG NG GKSTLLKL G+ L P +G ++R+ + ++G+++QH A++L ++ SPL+ + + FS + + + R+QLG + Sbjct: 421 SRVALVGPNGIGKSTLLKLFQ-------GI------LTPQQGRVIRHTHIKLGVYSQHSADQLDLTMSPLEFVRQKFSNISE-DYQYWRQQLGRY 501
BLAST of mRNA_L-elsbetiae_contig1100.908.1 vs. uniprot
Match: A0A7S3Q841_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q841_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 2.910e-7 Identity = 33/95 (34.74%), Postives = 53/95 (55.79%), Query Frame = 1 Query: 19 SRVVLVGRNGSGKSTLLKLIAAATEAGGGLGAGEEGLAPTRGTIVRNHNARVGLFTQHHAERLRMSDSPLQHMLRVFSGVEDVNEAELRRQLGEW 303 SR+ ++G NG+GKSTLL LI + L P G++ RN R+G+FTQH A++ + S +++ML +F D + E+R +G + Sbjct: 604 SRIGILGANGAGKSTLLNLIT-------------DKLQPLSGSVSRNGRLRIGMFTQHSADKFDLRLSSVENMLALFP---DATDQEMRSFIGRF 682
BLAST of mRNA_L-elsbetiae_contig1100.908.1 vs. uniprot
Match: B3RNB5_TRIAD (Uncharacterized protein (Fragment) n=2 Tax=Trichoplax TaxID=10227 RepID=B3RNB5_TRIAD) HSP 1 Score: 55.8 bits (133), Expect = 7.200e-7 Identity = 33/95 (34.74%), Postives = 54/95 (56.84%), Query Frame = 1 Query: 19 SRVVLVGRNGSGKSTLLKLIAAATEAGGGLGAGEEGLAPTRGTIVRNHNARVGLFTQHHAERLRMSDSPLQHMLRVFSGVEDVNEAELRRQLGEW 303 SRV +VG NG GKST L L+ +G L PT G + RN R+G++ QH A++L ++++P++++ R+F D+N R+ L + Sbjct: 375 SRVAIVGPNGVGKSTFLNLL---------IG----NLTPTDGEVRRNPRLRIGVYNQHAADQLNLTETPVEYLNRLF----DMNYQHSRQLLARY 452 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1100.908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1100.908.1 >prot_L-elsbetiae_contig1100.908.1 ID=prot_L-elsbetiae_contig1100.908.1|Name=mRNA_L-elsbetiae_contig1100.908.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp LDLTRRSRVVLVGRNGSGKSTLLKLIAAATEAGGGLGAGEEGLAPTRGTIback to top mRNA from alignment at L-elsbetiae_contig1100:28177..28878- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1100.908.1 ID=mRNA_L-elsbetiae_contig1100.908.1|Name=mRNA_L-elsbetiae_contig1100.908.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig1100:28177..28878- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1100:28177..28878- >mRNA_L-elsbetiae_contig1100.908.1 ID=mRNA_L-elsbetiae_contig1100.908.1|Name=mRNA_L-elsbetiae_contig1100.908.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig1100:28177..28878- (Laminarionema elsbetiae ELsaHSoW15)back to top |