mRNA_L-elsbetiae_contig1098.881.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1098.881.1
Unique NamemRNA_L-elsbetiae_contig1098.881.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1098.881.1 vs. uniprot
Match: D7FWX3_ECTSI (Axonemal 1-beta dynein heavy chain dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX3_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 3.600e-57
Identity = 88/94 (93.62%), Postives = 92/94 (97.87%), Query Frame = 3
Query:    6 VCSYPKEGAYCEGLFLDGARWNRQDGCLEEPPPMELFYQMPVIHFKPVESKKKASKGIYVCPTYMYPLRTGSRERPSFVIAAELRAGKHPSEFW 287
            + SYPKEGAYC+GLFLDGARWNRQ+GCLEEPPPMELFYQMPVIHFKPVESKKKA KG+YVCPTYMYPLRTGSRERPSFVIAAELRAGKHPSEFW
Sbjct: 4634 LSSYPKEGAYCDGLFLDGARWNRQEGCLEEPPPMELFYQMPVIHFKPVESKKKAPKGVYVCPTYMYPLRTGSRERPSFVIAAELRAGKHPSEFW 4727          
BLAST of mRNA_L-elsbetiae_contig1098.881.1 vs. uniprot
Match: A0A835Z4V1_9STRA (Dynein heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4V1_9STRA)

HSP 1 Score: 163 bits (412), Expect = 1.240e-44
Identity = 71/94 (75.53%), Postives = 84/94 (89.36%), Query Frame = 3
Query:    6 VCSYPKEGAYCEGLFLDGARWNRQDGCLEEPPPMELFYQMPVIHFKPVESKKKASKGIYVCPTYMYPLRTGSRERPSFVIAAELRAGKHPSEFW 287
            V + PKEGAYC+GLFL+GARW++ DGCL EP PM+L+++MPVIHFKPVE+KKKA KG+YVCP YMYP+RTG+RERPSFVIAAELRAGK   EFW
Sbjct: 4485 VPAAPKEGAYCDGLFLEGARWSKIDGCLVEPEPMQLYHEMPVIHFKPVEAKKKAPKGVYVCPVYMYPVRTGTRERPSFVIAAELRAGKATPEFW 4578          
BLAST of mRNA_L-elsbetiae_contig1098.881.1 vs. uniprot
Match: F0YHG4_AURAN (Dynein_C domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHG4_AURAN)

HSP 1 Score: 142 bits (357), Expect = 1.740e-41
Identity = 59/94 (62.77%), Postives = 77/94 (81.91%), Query Frame = 3
Query:    6 VCSYPKEGAYCEGLFLDGARWNRQDGCLEEPPPMELFYQMPVIHFKPVESKKKASKGIYVCPTYMYPLRTGSRERPSFVIAAELRAGKHPSEFW 287
            +  + K+G+YC GLFL+G+RW+  + CL EP PMELF  MPVIHFKPVE+KKK+SKG+Y CP YMYPLRTGSRERPSFVI+ ++++G   S++W
Sbjct:   48 ITQHAKDGSYCYGLFLEGSRWDFDNSCLTEPTPMELFCSMPVIHFKPVENKKKSSKGMYSCPLYMYPLRTGSRERPSFVISCDVKSGVQTSDYW 141          
BLAST of mRNA_L-elsbetiae_contig1098.881.1 vs. uniprot
Match: F0YMC7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMC7_AURAN)

HSP 1 Score: 147 bits (370), Expect = 5.660e-39
Identity = 61/94 (64.89%), Postives = 78/94 (82.98%), Query Frame = 3
Query:    6 VCSYPKEGAYCEGLFLDGARWNRQDGCLEEPPPMELFYQMPVIHFKPVESKKKASKGIYVCPTYMYPLRTGSRERPSFVIAAELRAGKHPSEFW 287
            +  + K+G+YC GLFL+GARW+  +GCL EP PMELF  MPVIHFKPVE+KKK+SKG+Y CP YMYPLRTGSRERPSFVI+ ++++G   S++W
Sbjct: 2175 ITQHAKDGSYCHGLFLEGARWDLDNGCLTEPTPMELFCSMPVIHFKPVENKKKSSKGLYSCPLYMYPLRTGSRERPSFVISCDVKSGVQTSDYW 2268          
BLAST of mRNA_L-elsbetiae_contig1098.881.1 vs. uniprot
Match: A0A7S3GTM2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GTM2_9STRA)

HSP 1 Score: 133 bits (334), Expect = 1.740e-38
Identity = 55/94 (58.51%), Postives = 69/94 (73.40%), Query Frame = 3
Query:    6 VCSYPKEGAYCEGLFLDGARWNRQDGCLEEPPPMELFYQMPVIHFKPVESKKKASKGIYVCPTYMYPLRTGSRERPSFVIAAELRAGKHPSEFW 287
            +  YP +G Y  G+FL+GA WN   G LEE  PMEL   MP+IHFKPVE K++ +KG Y CP YMYP+R+GSRERPS+V++ ELR GK  S+FW
Sbjct:    3 ISGYPNDGVYVSGVFLEGATWNYTGGYLEESRPMELISPMPIIHFKPVEGKRRVAKGFYTCPLYMYPIRSGSRERPSYVVSVELRGGKFSSDFW 96          
BLAST of mRNA_L-elsbetiae_contig1098.881.1 vs. uniprot
Match: A0A7S1CJP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CJP2_9STRA)

HSP 1 Score: 142 bits (357), Expect = 2.580e-37
Identity = 59/94 (62.77%), Postives = 76/94 (80.85%), Query Frame = 3
Query:    6 VCSYPKEGAYCEGLFLDGARWNRQDGCLEEPPPMELFYQMPVIHFKPVESKKKASKGIYVCPTYMYPLRTGSRERPSFVIAAELRAGKHPSEFW 287
            + +YPKEGAY  G+FL+GARW+   GCL EP PMELF  MP++HFKPVE+KKK+SKG+Y CP YMYP+RTG+RERPSF+IA ++++G     FW
Sbjct:  644 ITAYPKEGAYVRGMFLEGARWDIDHGCLVEPRPMELFCPMPLVHFKPVENKKKSSKGMYTCPLYMYPVRTGTRERPSFMIAVDVKSGAVDGTFW 737          
BLAST of mRNA_L-elsbetiae_contig1098.881.1 vs. uniprot
Match: A0A482RYH6_9ARCH (Dynein_C domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RYH6_9ARCH)

HSP 1 Score: 131 bits (329), Expect = 1.620e-36
Identity = 54/94 (57.45%), Postives = 70/94 (74.47%), Query Frame = 3
Query:    6 VCSYPKEGAYCEGLFLDGARWNRQDGCLEEPPPMELFYQMPVIHFKPVESKKKASKGIYVCPTYMYPLRTGSRERPSFVIAAELRAGKHPSEFW 287
            +   PK+G Y  G+F++GA WN   G LEE  PMEL   MP+IHFKPVE K++A+KG Y CP YMYP+R+GSRERPS+V+  +LRAGK  ++FW
Sbjct:   98 ILGVPKDGVYVSGIFIEGATWNYTGGYLEESRPMELISTMPIIHFKPVEGKRRANKGFYSCPVYMYPVRSGSRERPSYVVTVDLRAGKFSADFW 191          
BLAST of mRNA_L-elsbetiae_contig1098.881.1 vs. uniprot
Match: K3W7J7_GLOUD (Dynein_C domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W7J7_GLOUD)

HSP 1 Score: 127 bits (318), Expect = 2.430e-35
Identity = 57/91 (62.64%), Postives = 71/91 (78.02%), Query Frame = 3
Query:   18 PKEGAYCEGLFLDGARWNRQDGCLEEPPPMELFYQMPVIHFKPVESKKKASKGIYVCPTYMYPLRTGSRERPSFVIAAELRAGKHPS-EFW 287
            PK+GAY +GL L+GARW+    CL EP PMEL   MP++HFKPVE KKK+SKG+Y CP YMYPLRTG+RERPSF+IA +L++G   S + W
Sbjct:   61 PKDGAYIKGLILEGARWDFDHDCLTEPHPMELNSGMPILHFKPVEPKKKSSKGLYSCPLYMYPLRTGTRERPSFMIAVDLKSGTGKSPDIW 151          
BLAST of mRNA_L-elsbetiae_contig1098.881.1 vs. uniprot
Match: A0A5B8MZU6_9CHLO (Heavy chain of dynein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MZU6_9CHLO)

HSP 1 Score: 135 bits (339), Expect = 8.670e-35
Identity = 56/90 (62.22%), Postives = 72/90 (80.00%), Query Frame = 3
Query:   18 PKEGAYCEGLFLDGARWNRQDGCLEEPPPMELFYQMPVIHFKPVESKKKASKGIYVCPTYMYPLRTGSRERPSFVIAAELRAGKHPSEFW 287
            PKEG Y +G FL+GA W+ ++GCL EP PMEL   MP+IHFKP+E+KKK  KG+Y+CP Y+YP+RTG+RERPSFVI  EL++G + SE W
Sbjct: 4364 PKEGVYIKGAFLEGAGWDFENGCLVEPEPMELIVPMPIIHFKPIENKKKVPKGVYLCPMYLYPVRTGTRERPSFVINVELKSGSNGSEHW 4453          
BLAST of mRNA_L-elsbetiae_contig1098.881.1 vs. uniprot
Match: A0A6A5AJA7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AJA7_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.960e-34
Identity = 61/92 (66.30%), Postives = 75/92 (81.52%), Query Frame = 3
Query:   18 PKEGAYCEGLFLDGARWNRQDGCLEEPPPMELFYQMPVIHFKPVESKKKASKGIYVCPTYMYPLRTGSRERPSFVIAAELR--AGKHPSEFW 287
            PK+GAY +GLFL+GARW+ +  CL EP PM+L+  MP+IHFKPVE+KKKASKG Y CP YMYP+RTG+RERPSF+IA +LR  AGK P + W
Sbjct:  540 PKDGAYVKGLFLEGARWDFEHDCLAEPNPMDLYCNMPMIHFKPVETKKKASKGTYSCPLYMYPIRTGTRERPSFMIAVDLRCGAGKSP-DLW 630          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1098.881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWX3_ECTSI3.600e-5793.62Axonemal 1-beta dynein heavy chain dynein heavy ch... [more]
A0A835Z4V1_9STRA1.240e-4475.53Dynein heavy chain n=1 Tax=Tribonema minus TaxID=3... [more]
F0YHG4_AURAN1.740e-4162.77Dynein_C domain-containing protein (Fragment) n=1 ... [more]
F0YMC7_AURAN5.660e-3964.89Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S3GTM2_9STRA1.740e-3858.51Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S1CJP2_9STRA2.580e-3762.77Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A482RYH6_9ARCH1.620e-3657.45Dynein_C domain-containing protein n=1 Tax=archaeo... [more]
K3W7J7_GLOUD2.430e-3562.64Dynein_C domain-containing protein n=1 Tax=Globisp... [more]
A0A5B8MZU6_9CHLO8.670e-3562.22Heavy chain of dynein n=1 Tax=Chloropicon primus T... [more]
A0A6A5AJA7_9STRA1.960e-3466.30Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1098contigL-elsbetiae_contig1098:18369..19149 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size291
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815313.961069-CDS-L-elsbetiae_contig1098:18370..185151622815313.961069-CDS-L-elsbetiae_contig1098:18370..18515Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1098 18371..18515 -
1691682832.5392506-CDS-L-elsbetiae_contig1098:18370..185151691682832.5392506-CDS-L-elsbetiae_contig1098:18370..18515Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1098 18371..18515 -
1622815313.9753697-CDS-L-elsbetiae_contig1098:19006..191491622815313.9753697-CDS-L-elsbetiae_contig1098:19006..19149Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1098 19007..19149 -
1691682832.5523953-CDS-L-elsbetiae_contig1098:19006..191491691682832.5523953-CDS-L-elsbetiae_contig1098:19006..19149Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1098 19007..19149 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1098.881.1prot_L-elsbetiae_contig1098.881.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1098 18371..19149 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1098.881.1

>prot_L-elsbetiae_contig1098.881.1 ID=prot_L-elsbetiae_contig1098.881.1|Name=mRNA_L-elsbetiae_contig1098.881.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
PLSAATRRRVRTARGFSLTALGGTGRTAAWRNLLRWSFSTRCLSFTSSPW
KARRRLPRASTSARHTCTRSARALENGRPSSSPRSSGRASTRRSFG
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mRNA from alignment at L-elsbetiae_contig1098:18369..19149-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1098.881.1 ID=mRNA_L-elsbetiae_contig1098.881.1|Name=mRNA_L-elsbetiae_contig1098.881.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=781bp|location=Sequence derived from alignment at L-elsbetiae_contig1098:18369..19149- (Laminarionema elsbetiae ELsaHSoW15)
CCCTTGTCTGCAGCTACCCGAAGGAGGGTGCGTACTGCGAGGGGCTTTTC CTTGACGGCGCTAGGTGGAACCGGCAGGACGGCTGCCTGGAGGAACCTCC TCCGATGGAGCTTTTCTACCAGATGCCTGTCATTCACTTCAAGGTCCTGA TAATATGTAGACTATTGGTGTTCATATCCTGCGGCGTTTACATCCTGTAA CGTCGGATTCGGCTTTCCAATTTTTGCGAAAGTCCTTCTTTATGGGCCCC TCTTGACTAGGCGTCAGGTATTCTCCGTACGTGGCCCATCAGATGTTACC AGCCCCAGGAGGTTGGATATTACAGTGCTACAGTATGAGGGCTTGGCTTG GCTTGTCTACATAGACTGGGCGCTAGGGTTCGGGTGCGTACGTCCAGCAG GCAGAGCAGCTACATGTTGCTTTTGCCTCGGCAACCCCTCCCTCTCTCCC TCCTCTTCAAATTACTCCTGATCTACATACATACATAGAACCGACACCTT CTTGTCGCCTTTTGCTACTAAAGCCAGTGACCCTTTGGTTTGAGAGTATC CCAGGACCAGCGAAACGCACGAGCGAATCCGGTGCACACCAACTGAACTC GCGAACCCATTTTTGCCCCCACCCATCGCCCCAGCCCGTGGAAAGCAAGA AGAAGGCTTCCAAGGGCATCTACGTCTGCCCGACATACATGTACCCGCTC CGCACGGGCTCTCGAGAACGGCCGTCCTTCGTCATCGCCGCGGAGCTCCG GGCGGGCAAGCACCCGTCGGAGTTTTGGACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1098:18369..19149-

>mRNA_L-elsbetiae_contig1098.881.1 ID=mRNA_L-elsbetiae_contig1098.881.1|Name=mRNA_L-elsbetiae_contig1098.881.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig1098:18369..19149- (Laminarionema elsbetiae ELsaHSoW15)
CCCTTGTCTGCAGCTACCCGAAGGAGGGTGCGTACTGCGAGGGGCTTTTC
CTTGACGGCGCTAGGTGGAACCGGCAGGACGGCTGCCTGGAGGAACCTCC
TCCGATGGAGCTTTTCTACCAGATGCCTGTCATTCACTTCAAGCCCTTGT
CTGCAGCTACCCGAAGGAGGGTGCGTACTGCGAGGGGCTTTTCCTTGACG
GCGCTAGGTGGAACCGGCAGGACGGCTGCCTGGAGGAACCTCCTCCGATG
GAGCTTTTCTACCAGATGCCTGTCATTCACTTCAAGCCCGTGGAAAGCAA
GAAGAAGGCTTCCAAGGGCATCTACGTCTGCCCGACATACATGTACCCGC
TCCGCACGGGCTCTCGAGAACGGCCGTCCTTCGTCATCGCCGCGGAGCTC
CGGGCGGGCAAGCACCCGTCGGAGTTTTGGACCCGTGGAAAGCAAGAAGA
AGGCTTCCAAGGGCATCTACGTCTGCCCGACATACATGTACCCGCTCCGC
ACGGGCTCTCGAGAACGGCCGTCCTTCGTCATCGCCGCGGAGCTCCGGGC
GGGCAAGCACCCGTCGGAGTTTTGGA
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