mRNA_L-elsbetiae_contig10974.874.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10974.874.1
Unique NamemRNA_L-elsbetiae_contig10974.874.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10974.874.1 vs. uniprot
Match: A0A6H5JJY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY6_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 3.410e-18
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:  334 GDASGHPLDEGGCFVCKSNDQQDLILLCDGCDGEYHTFCVRP 459
            GD +GHPLD+GGCFVCK ND+QDLILLCDGC+GEYHTFCV P
Sbjct:  104 GDPNGHPLDQGGCFVCKKNDKQDLILLCDGCEGEYHTFCVDP 145
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BLAST of mRNA_L-elsbetiae_contig10974.874.1 vs. uniprot
Match: D7FHY8_ECTSI (Trithorax 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY8_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 4.320e-13
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:  352 PLDEGGCFVCKSNDQQDLILLCDGCDGEYHTFCVRP 459
            P  +GGCFVCK ND+QDLILLCDGC+GEYHTFCV P
Sbjct:  366 PAAKGGCFVCKKNDKQDLILLCDGCEGEYHTFCVDP 401
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BLAST of mRNA_L-elsbetiae_contig10974.874.1 vs. uniprot
Match: H3GP62_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GP62_PHYRM)

HSP 1 Score: 62.4 bits (150), Expect = 2.110e-8
Identity = 27/47 (57.45%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:  319 EAPVVGDASGHPLDEGGCFVCKSNDQQDLILLCDGCDGEYHTFCVRP 459
            +APVVG    H     GC VC S+   D ILLCDGCDGEYHT+C+ P
Sbjct:   15 KAPVVGGPHAH---SNGCVVCGSDQNGDSILLCDGCDGEYHTYCLVP 58
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BLAST of mRNA_L-elsbetiae_contig10974.874.1 vs. uniprot
Match: A0A7S1J8J5_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1J8J5_9EUGL)

HSP 1 Score: 58.9 bits (141), Expect = 3.100e-7
Identity = 20/34 (58.82%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:  358 DEGGCFVCKSNDQQDLILLCDGCDGEYHTFCVRP 459
            +E GC  C SN +QD++L+CDGC+ EYHTFC+ P
Sbjct:   72 EETGCAACGSNGEQDVLLVCDGCEAEYHTFCLDP 105
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BLAST of mRNA_L-elsbetiae_contig10974.874.1 vs. uniprot
Match: A0A5D6XZG4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZG4_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 4.480e-7
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:  346 GHP-LDEGGCFVCKSNDQQDLILLCDGCDGEYHTFCVRP 459
            G+P +   GC VC  +  QD ILLCDGCDGEYHT+C+ P
Sbjct:   16 GNPHMHSNGCVVCGLDHNQDSILLCDGCDGEYHTYCLVP 54
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BLAST of mRNA_L-elsbetiae_contig10974.874.1 vs. uniprot
Match: G4ZWK5_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZWK5_PHYSP)

HSP 1 Score: 58.5 bits (140), Expect = 4.570e-7
Identity = 26/46 (56.52%), Postives = 29/46 (63.04%), Query Frame = 1 
Query:  322 APVVGDASGHPLDEGGCFVCKSNDQQDLILLCDGCDGEYHTFCVRP 459
            A VVG    H     GC VC S+   D ILLCDGCDGEYHT+C+ P
Sbjct:   15 AAVVGGPHAH---SNGCAVCGSDQNGDSILLCDGCDGEYHTYCLVP 57
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BLAST of mRNA_L-elsbetiae_contig10974.874.1 vs. uniprot
Match: A0A2P4YUW9_9STRA (Histone deacetylase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YUW9_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 4.580e-7
Identity = 25/44 (56.82%), Postives = 28/44 (63.64%), Query Frame = 1 
Query:  328 VVGDASGHPLDEGGCFVCKSNDQQDLILLCDGCDGEYHTFCVRP 459
            VVG    H     GC VC S+   D ILLCDGCDGEYHT+C+ P
Sbjct:   17 VVGGPHAH---SNGCVVCGSDQNGDSILLCDGCDGEYHTYCLVP 57
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BLAST of mRNA_L-elsbetiae_contig10974.874.1 vs. uniprot
Match: W2QGP4_PHYPN (Uncharacterized protein n=8 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QGP4_PHYPN)

HSP 1 Score: 58.2 bits (139), Expect = 6.170e-7
Identity = 22/39 (56.41%), Postives = 26/39 (66.67%), Query Frame = 1 
Query:  343 SGHPLDEGGCFVCKSNDQQDLILLCDGCDGEYHTFCVRP 459
            +G      GC VC S+   D ILLCDGCDGEYHT+C+ P
Sbjct:   20 AGPHAQSNGCVVCGSDQNGDSILLCDGCDGEYHTYCLVP 58
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BLAST of mRNA_L-elsbetiae_contig10974.874.1 vs. uniprot
Match: V9FLV3_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica P1569 TaxID=1317065 RepID=V9FLV3_PHYPR)

HSP 1 Score: 58.2 bits (139), Expect = 6.170e-7
Identity = 22/39 (56.41%), Postives = 26/39 (66.67%), Query Frame = 1 
Query:  343 SGHPLDEGGCFVCKSNDQQDLILLCDGCDGEYHTFCVRP 459
            +G      GC VC S+   D ILLCDGCDGEYHT+C+ P
Sbjct:   20 AGPHAQSNGCVVCGSDQNGDSILLCDGCDGEYHTYCLVP 58
[Close]
BLAST of mRNA_L-elsbetiae_contig10974.874.1 vs. uniprot
Match: A0A2R7X5M2_ONCFA (PHD-type domain-containing protein (Fragment) n=1 Tax=Oncopeltus fasciatus TaxID=7536 RepID=A0A2R7X5M2_ONCFA)

HSP 1 Score: 53.1 bits (126), Expect = 8.720e-7
Identity = 18/36 (50.00%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:  352 PLDEGGCFVCKSNDQQDLILLCDGCDGEYHTFCVRP 459
            PL++  C  C+  D+++ +LLCDGCD  YHTFC+ P
Sbjct:   14 PLEKYFCMNCEGGDEEESMLLCDGCDDSYHTFCLVP 49
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10974.874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJY6_9PHAE3.410e-1883.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHY8_ECTSI4.320e-1380.56Trithorax 3 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
H3GP62_PHYRM2.110e-857.45Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A7S1J8J5_9EUGL3.100e-758.82Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A5D6XZG4_9STRA4.480e-758.97Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
G4ZWK5_PHYSP4.570e-756.52Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A2P4YUW9_9STRA4.580e-756.82Histone deacetylase n=1 Tax=Phytophthora palmivora... [more]
W2QGP4_PHYPN6.170e-756.41Uncharacterized protein n=8 Tax=Phytophthora paras... [more]
V9FLV3_PHYPR6.170e-756.41Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
A0A2R7X5M2_ONCFA8.720e-750.00PHD-type domain-containing protein (Fragment) n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10974contigL-elsbetiae_contig10974:3538..4935 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue1.9e-11
Seed eggNOG ortholog2880.D7FHY8
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K02606,ko:K09186,ko:K09188,ko:K14964,ko:K17586,ko:K22197
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko04110,ko04111,ko04113,ko04934,ko05202,ko05225,map00310,map04110,map04111,map04113,map04934,map05202,map05225
KEGG ModuleM00284
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mRNA processing
EggNOG OGsCOG2940@1,COG5141@1,KOG0825@1,KOG0825@2759,KOG0955@2759,KOG4443@2759
EC2.1.1.43
COG Functional cat.LO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03000,ko03032,ko03036
Exons2
Model size461
Cds size459
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815313.5831943-CDS-L-elsbetiae_contig10974:3539..39541622815313.5831943-CDS-L-elsbetiae_contig10974:3539..3954Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10974 3540..3954 -
1691682832.2735665-CDS-L-elsbetiae_contig10974:3539..39541691682832.2735665-CDS-L-elsbetiae_contig10974:3539..3954Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10974 3540..3954 -
1622815313.5928173-CDS-L-elsbetiae_contig10974:4891..49351622815313.5928173-CDS-L-elsbetiae_contig10974:4891..4935Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10974 4892..4935 -
1691682832.2855403-CDS-L-elsbetiae_contig10974:4891..49351691682832.2855403-CDS-L-elsbetiae_contig10974:4891..4935Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10974 4892..4935 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10974.874.1prot_L-elsbetiae_contig10974.874.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10974 3540..4935 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10974.874.1

>prot_L-elsbetiae_contig10974.874.1 ID=prot_L-elsbetiae_contig10974.874.1|Name=mRNA_L-elsbetiae_contig10974.874.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp
WCACVCAAVTLHLNRVNRHNFAGSRGSSQGEKLSPLSLSLSLFLPFPNQP
RGHRLSGLVRMEEPSTPATPTAPGSGANGDGDISSSRAVDAATADATAAP
PPLDAAEAPVVGDASGHPLDEGGCFVCKSNDQQDLILLCDGCDGEYHTFC
VRP
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mRNA from alignment at L-elsbetiae_contig10974:3538..4935-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10974.874.1 ID=mRNA_L-elsbetiae_contig10974.874.1|Name=mRNA_L-elsbetiae_contig10974.874.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1398bp|location=Sequence derived from alignment at L-elsbetiae_contig10974:3538..4935- (Laminarionema elsbetiae ELsaHSoW15)
TGGTGTGCGTGTGTGTGCGCTGCTGTCACCCTTCATCTTAACAGGTATGA
TTCGATGGCACAACCATAGCGGCTTGTCGTTGGCAGTTTTCGTGTGCCGC
AACTCTTATTATCTTGTGATCAGGCCGGGACTGTTGAATCGAGGGGGCAC
AACATCTGGCTAGCGCGGTCGCCGCGAGCGAGAGTACCTGCATACCTGAA
ACGGATTCTCAAGATCCCGGCCTACGTTACCCTTCTTTTGTGTTAGACGC
GTATGTTGGCTGGATTGGCTGGAGTCTCACCGATATTTGGCCAGGTGGCC
AGCCCTTACCCAAGAACCTCATAATTTTCCAGTACAATTTTTGATAAGGA
AAAAAAACAGCGAGGGGGACCACATGATGAAATCCACACACCACGCCGCT
CGCTCTATCAAGTGGGAGATCCCGCGTCTGCTGTTTGTTCTGAGACGAGA
GTCACGAGATATAAAAATGACCTGCCTGTACCTTTATTTTGGAAGTGGTC
GCCACCATGAAATGTGTACTTGTGGACCTGTGGCGCCAATGTAGAGTCCT
ACAAGTAGGCCTAGACTACATGTAGGGCTAGACTAGATAGACGGAGACAG
GAGGGACCTGAAAGATTCAGACAAAAACAGAGCCGGTCTCGGAAAAGCTT
GCATGCAATCTTTGCGTAGCGTACTGTCGAAGTCACCCGCGCACTCTTCT
CCCTCCCCCTTTCTCTCTCTTCTCTCTCTGCGTGTAAGTATATGTAAATA
TGCGGTGGTGATGGCAAATCTTGAAGGTACTCACACGAAAATGATTATCT
CGGCTTCGATCGATCTTTCATTCCTGTATCTTTCTATACGCACACGGTCG
AAGGGTTGGCTTTTAACCTGCTAATCTCCATCACCATGCGTGACAATAAA
ATACAGTTTTAGTACAACGTTGCTCCAACCATTCCGCCATGTTCCGCCCG
CTCAATCTCGCTCGCCGCCGTTTCTTCCCAGGGTTAATCGCCACAACTTC
GCGGGGTCAAGAGGATCATCACAAGGGGAGAAGCTAAGCCCTCTCTCTTT
ATCTCTCTCTCTCTTTCTCCCGTTCCCGAATCAACCCCGGGGGCACCGTC
TCTCGGGCCTAGTGAGGATGGAGGAGCCGTCGACCCCTGCCACTCCCACG
GCACCCGGTTCCGGCGCCAACGGCGACGGCGACATCAGCAGCAGTAGAGC
TGTCGACGCCGCGACCGCCGACGCTACCGCAGCGCCCCCCCCTCTTGATG
CCGCCGAGGCCCCCGTGGTGGGCGACGCCAGTGGCCACCCCCTCGACGAA
GGCGGCTGCTTCGTGTGCAAGAGCAACGACCAGCAGGACCTCATCCTTCT
CTGCGATGGCTGCGACGGCGAGTACCACACCTTCTGCGTGAGGCCCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10974:3538..4935-

>mRNA_L-elsbetiae_contig10974.874.1 ID=mRNA_L-elsbetiae_contig10974.874.1|Name=mRNA_L-elsbetiae_contig10974.874.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig10974:3538..4935- (Laminarionema elsbetiae ELsaHSoW15)
TGGTGTGCGTGTGTGTGCGCTGCTGTCACCCTTCATCTTAACAGTGGTGT
GCGTGTGTGTGCGCTGCTGTCACCCTTCATCTTAACAGGGTTAATCGCCA
CAACTTCGCGGGGTCAAGAGGATCATCACAAGGGGAGAAGCTAAGCCCTC
TCTCTTTATCTCTCTCTCTCTTTCTCCCGTTCCCGAATCAACCCCGGGGG
CACCGTCTCTCGGGCCTAGTGAGGATGGAGGAGCCGTCGACCCCTGCCAC
TCCCACGGCACCCGGTTCCGGCGCCAACGGCGACGGCGACATCAGCAGCA
GTAGAGCTGTCGACGCCGCGACCGCCGACGCTACCGCAGCGCCCCCCCCT
CTTGATGCCGCCGAGGCCCCCGTGGTGGGCGACGCCAGTGGCCACCCCCT
CGACGAAGGCGGCTGCTTCGTGTGCAAGAGCAACGACCAGCAGGACCTCA
TCCTTCTCTGCGATGGCTGCGACGGCGAGTACCACACCTTCTGCGTGAGG
CCCGGTTAATCGCCACAACTTCGCGGGGTCAAGAGGATCATCACAAGGGG
AGAAGCTAAGCCCTCTCTCTTTATCTCTCTCTCTCTTTCTCCCGTTCCCG
AATCAACCCCGGGGGCACCGTCTCTCGGGCCTAGTGAGGATGGAGGAGCC
GTCGACCCCTGCCACTCCCACGGCACCCGGTTCCGGCGCCAACGGCGACG
GCGACATCAGCAGCAGTAGAGCTGTCGACGCCGCGACCGCCGACGCTACC
GCAGCGCCCCCCCCTCTTGATGCCGCCGAGGCCCCCGTGGTGGGCGACGC
CAGTGGCCACCCCCTCGACGAAGGCGGCTGCTTCGTGTGCAAGAGCAACG
ACCAGCAGGACCTCATCCTTCTCTGCGATGGCTGCGACGGCGAGTACCAC
ACCTTCTGCGTGAGGCCC
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