mRNA_L-elsbetiae_contig10963.865.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10963.865.1
Unique NamemRNA_L-elsbetiae_contig10963.865.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10963.865.1 vs. uniprot
Match: D8LAW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAW4_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 3.060e-39
Identity = 83/149 (55.70%), Postives = 91/149 (61.07%), Query Frame = 1 
Query:   52 MSTVAPFVVGLVASGASYAYLSRELVTSRNALMSKHLNADLDTLFYPVRQGPRRFGRPGSERG-CADGSGLGSGSXXXXXXXXXXXXXXXXXXXXXLPPPEGEHQLVTDARNKWNTAVLRCSDTIVGALYGSGVAKEG-AESSAETRDS 492
            MST+  F+VGLVASG  YAYLSR+LVTSRN LMSKH  AD    +YPVR+ PR+FGRP  ERG C  GS   S +                      P P GEH LVTDAR KWN AVLRCSDT+  ALYG G A EG AE   E RDS
Sbjct:    1 MSTIPSFLVGLVASGVGYAYLSRDLVTSRNKLMSKHFKADGVEPYYPVRKMPRQFGRPKGERGGCPRGSSFNSETSRGVVSGLPE------------PAPAGEHHLVTDARTKWNAAVLRCSDTVFSALYGRGSATEGKAEGGDEPRDS 137
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10963.865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LAW4_ECTSI3.060e-3955.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10963contigL-elsbetiae_contig10963:2017..3402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_006200.1
Exons2
Model size497
Cds size495
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815312.8768802-CDS-L-elsbetiae_contig10963:2016..22171622815312.8768802-CDS-L-elsbetiae_contig10963:2016..2217Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10963 2017..2217 +
1691682831.7712474-CDS-L-elsbetiae_contig10963:2016..22171691682831.7712474-CDS-L-elsbetiae_contig10963:2016..2217Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10963 2017..2217 +
1622815312.8865597-CDS-L-elsbetiae_contig10963:3108..34021622815312.8865597-CDS-L-elsbetiae_contig10963:3108..3402Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10963 3109..3402 +
1691682831.7826872-CDS-L-elsbetiae_contig10963:3108..34021691682831.7826872-CDS-L-elsbetiae_contig10963:3108..3402Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10963 3109..3402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10963.865.1prot_L-elsbetiae_contig10963.865.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10963 2017..3402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10963.865.1

>prot_L-elsbetiae_contig10963.865.1 ID=prot_L-elsbetiae_contig10963.865.1|Name=mRNA_L-elsbetiae_contig10963.865.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=165bp
NQPSHHHSVPCLCAHRFMSTVAPFVVGLVASGASYAYLSRELVTSRNALM
SKHLNADLDTLFYPVRQGPRRFGRPGSERGCADGSGLGSGSSSSSSSSSS
SSSSSGGGGGGGLPPPEGEHQLVTDARNKWNTAVLRCSDTIVGALYGSGV
AKEGAESSAETRDS*
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mRNA from alignment at L-elsbetiae_contig10963:2017..3402+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10963.865.1 ID=mRNA_L-elsbetiae_contig10963.865.1|Name=mRNA_L-elsbetiae_contig10963.865.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1386bp|location=Sequence derived from alignment at L-elsbetiae_contig10963:2017..3402+ (Laminarionema elsbetiae ELsaHSoW15)
AACCAACCGTCCCACCACCACAGCGTTCCCTGCCTGTGTGCCCATCGCTT
CATGTCAACGGTCGCCCCATTTGTGGTCGGGCTAGTTGCCTCTGGCGCGA
GCTACGCCTATCTTTCGCGCGAGCTCGTCACATCAAGAAATGCCCTGATG
TCCAAGCACCTCAACGCCGACCTGGACACTCTCTTTTATCCTGTTCGACA
GGTATGTGCGTCCTTGTACGAGTACATATAGGCTCTTTGCTCTACTGCGG
AACAAAACAGCACAAAATATTCTACAGCCCGGCGAAACGCTCTTGGTTTT
GCGCTGCTTTATTTGAGACGTGAGTTGCACAAACACATCTATCTCAATCT
CTGCTCTGCACGAACGGCGGCACAACCGCTGCTTGTACACAGCGAGGGCT
TGAACCCGCAGCACCGAAGCACCGGGGCATCCCGCGGTTACGTTATTTGC
AGATATCTTCGAGAACGGACTCTGAGTATAGTACCTCCCTCTTACAACGC
CATGCCTGAGCATCTGCCTTCCGGGTACATACATATGGTTTGGTACGAGG
ACGTACATACCATATGTACGATACTTCGAAGTTTTGGAAAAGAGTGGGTG
GGGGATTTGGGGCATGAGCAGTGTGCAGTTGCGGCAGTCTTTTATGCCGT
TTGTATGCTTCGATCACGGCTTGAAGTCAGTGTCAGTTGTCACTCGCGCC
CCCTGGCTCAAACATACTTCTACATATTGCACGTGTGTCAGCAAGCTGCA
GGTTTATCATCTGTCCCACCCTATGTGAGGACAACACACACACCCAAGGA
GTGCTCGGATTTCGCATCCCATCGCGAAAACACGCGTTCGAAGAGTACTA
CTGCTACTGTGTCTGTTGTCCCCCACCCCGCCTTACAATAGAATTTGTGT
TCGTTGTGTTTTTTCGAGTGGAACCACCCATAACGCGAAACACACGCTTT
GGGGAGGACTCACAGACACTACACGCCTCCTCAATCAATGCCGCCCGGGG
ACTTACAGATTCTACACGCCTCCTCCATCCATGCCGCCCACACTTAACTT
ACCCTTGCTCCCCCCCTTGTACATATATCGGCCGCCAAACAGGGACCTCG
CCGATTTGGGCGACCTGGAAGCGAGCGGGGTTGCGCTGATGGCTCTGGCT
TAGGTTCGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCGGCGGCGGCGGCGGCGGCGGCTTGCCACCACCGGAGGGAGAGCA
CCAACTCGTGACAGACGCCCGCAACAAGTGGAACACCGCGGTTTTGCGAT
GCTCCGACACCATCGTCGGCGCCTTGTACGGCAGTGGTGTGGCAAAAGAG
GGGGCCGAGAGCAGCGCGGAAACTCGAGATTCGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10963:2017..3402+

>mRNA_L-elsbetiae_contig10963.865.1 ID=mRNA_L-elsbetiae_contig10963.865.1|Name=mRNA_L-elsbetiae_contig10963.865.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=990bp|location=Sequence derived from alignment at L-elsbetiae_contig10963:2017..3402+ (Laminarionema elsbetiae ELsaHSoW15)
AACCAACCGTCCCACCACCACAGCGTTCCCTGCCTGTGTGCCCATCGCTT
CATGTCAACGGTCGCCCCATTTGTGGTCGGGCTAGTTGCCTCTGGCGCGA
GCTACGCCTATCTTTCGCGCGAGCTCGTCACATCAAGAAATGCCCTGATG
TCCAAGCACCTCAACGCCGACCTGGACACTCTCTTTTATCCTGTTCGACA
GAACCAACCGTCCCACCACCACAGCGTTCCCTGCCTGTGTGCCCATCGCT
TCATGTCAACGGTCGCCCCATTTGTGGTCGGGCTAGTTGCCTCTGGCGCG
AGCTACGCCTATCTTTCGCGCGAGCTCGTCACATCAAGAAATGCCCTGAT
GTCCAAGCACCTCAACGCCGACCTGGACACTCTCTTTTATCCTGTTCGAC
AGGGACCTCGCCGATTTGGGCGACCTGGAAGCGAGCGGGGTTGCGCTGAT
GGCTCTGGCTTAGGTTCGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCGGCGGCGGCGGCGGCGGCGGCTTGCCACCACCGG
AGGGAGAGCACCAACTCGTGACAGACGCCCGCAACAAGTGGAACACCGCG
GTTTTGCGATGCTCCGACACCATCGTCGGCGCCTTGTACGGCAGTGGTGT
GGCAAAAGAGGGGGCCGAGAGCAGCGCGGAAACTCGAGATTCGTGAGGAC
CTCGCCGATTTGGGCGACCTGGAAGCGAGCGGGGTTGCGCTGATGGCTCT
GGCTTAGGTTCGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCGGCGGCGGCGGCGGCGGCGGCTTGCCACCACCGGAGGGAG
AGCACCAACTCGTGACAGACGCCCGCAACAAGTGGAACACCGCGGTTTTG
CGATGCTCCGACACCATCGTCGGCGCCTTGTACGGCAGTGGTGTGGCAAA
AGAGGGGGCCGAGAGCAGCGCGGAAACTCGAGATTCGTGA
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