prot_L-elsbetiae_contig10963.865.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig10963.865.1
Unique Nameprot_L-elsbetiae_contig10963.865.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length165
Homology
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BLAST of mRNA_L-elsbetiae_contig10963.865.1 vs. uniprot
Match: D8LAW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAW4_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 3.060e-39
Identity = 83/149 (55.70%), Postives = 91/149 (61.07%), Query Frame = 0 
Query:   18 MSTVAPFVVGLVASGASYAYLSRELVTSRNALMSKHLNADLDTLFYPVRQGPRRFGRPGSERG-CADGSGLGSGSXXXXXXXXXXXXXXXXXXXXXLPPPEGEHQLVTDARNKWNTAVLRCSDTIVGALYGSGVAKEG-AESSAETRDS 164
            MST+  F+VGLVASG  YAYLSR+LVTSRN LMSKH  AD    +YPVR+ PR+FGRP  ERG C  GS   S +                      P P GEH LVTDAR KWN AVLRCSDT+  ALYG G A EG AE   E RDS
Sbjct:    1 MSTIPSFLVGLVASGVGYAYLSRDLVTSRNKLMSKHFKADGVEPYYPVRKMPRQFGRPKGERGGCPRGSSFNSETSRGVVSGLPE------------PAPAGEHHLVTDARTKWNAAVLRCSDTVFSALYGRGSATEGKAEGGDEPRDS 137
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10963.865.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LAW4_ECTSI3.060e-3955.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..38
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 39..164
NoneNo IPR availableTMHMMTMhelixcoord: 20..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10963contigL-elsbetiae_contig10963:2017..3402 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10963.865.1mRNA_L-elsbetiae_contig10963.865.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig10963 2017..3402 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig10963.865.1 ID=prot_L-elsbetiae_contig10963.865.1|Name=mRNA_L-elsbetiae_contig10963.865.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=165bp
NQPSHHHSVPCLCAHRFMSTVAPFVVGLVASGASYAYLSRELVTSRNALM
SKHLNADLDTLFYPVRQGPRRFGRPGSERGCADGSGLGSGSSSSSSSSSS
SSSSSGGGGGGGLPPPEGEHQLVTDARNKWNTAVLRCSDTIVGALYGSGV
AKEGAESSAETRDS*
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