mRNA_L-elsbetiae_contig10887.810.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10887.810.1
Unique NamemRNA_L-elsbetiae_contig10887.810.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10887.810.1 vs. uniprot
Match: A0A7T8KJ69_CALRO (Uncharacterized protein n=1 Tax=Caligus rogercresseyi TaxID=217165 RepID=A0A7T8KJ69_CALRO)

HSP 1 Score: 62.4 bits (150), Expect = 6.160e-8
Identity = 49/169 (28.99%), Postives = 77/169 (45.56%), Query Frame = 1
Query:   97 VAATTPSNVLHHLNHHHKKEGRVKQALEDDAESAQDSTPKSGGGEIKKYIKRVGAPLSLTARNSYYGSYIVKDLEPLRTVESPNFRNMVRGLMQNPKLELPGAYTMAQWVSEKAEEVRDIIREKIRRKQ-VCLTGDGWDATNGSGAFYSLTAHFTDPDTAELVSCTLAC 600
             A  + SN+L HL   HK E  V   L         +TP++   + +KY +  G  L          +YIV+D+ PL TV+SP FR +++ +  +P ++LP       W+  K   +   ++  +   + V  T D W A N S  F  +T H+ D  T +     LAC
Sbjct:   56 TARNSTSNLLKHLESIHKNEDLVATCLT--------NTPQTR--KRRKYSELNGEELK-----GLVSAYIVEDMLPLSTVDSPTFRAIIKKIPLSPSVKLPYRKAYTSWLDRKFTSMESALKSSLEGIEFVSTTADLWTANNKS--FLGVTVHWIDNITLKRRKGALAC 207          
BLAST of mRNA_L-elsbetiae_contig10887.810.1 vs. uniprot
Match: A0A672FF88_SALFA (BED-type domain-containing protein n=3 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672FF88_SALFA)

HSP 1 Score: 62.0 bits (149), Expect = 8.340e-8
Identity = 50/188 (26.60%), Postives = 84/188 (44.68%), Query Frame = 1
Query:   43 KSTDPRSKMCLCGFYGKPVAATTPSNVLHHLNHHHKKEGRVKQALEDDAESAQDSTPKSGGGEIKKYIKRVGAPLSLTARNSYYGSYIVKDLEPLRTVESPNFRNMVRGLMQNPKLELPG-AYTMAQWVSEKAEEVRDIIREKIRRKQ-VCLTGDGWDATNGSGAFYSLTAHFTDPDTAELVSCTLAC 600
            K+   R K+C  G      +  + SN+  HL   H     V + +  + E    + P      +     +V     L   N    S+IV+D+ P+ TVESP+FRN++R +  +    LP  + T A ++ +  E++   +++   R + V  T D W   N S  F  +T H+ DPD  +     +AC
Sbjct:   74 KNVTVRCKLCP-GQKHLSTSVNSTSNLSKHLERQHGSTKLVSKNIRGEREDGTVTAPTPKQPRLNFQQPQVTTKAEL---NRLVASFIVEDMLPISTVESPSFRNILRRIPGSGSERLPSDSKTFANYLDQCYEKMETQLKQTFERLEFVSTTADIWTTCNKS--FLGMTCHWIDPDNFQREKAAIAC 255          
BLAST of mRNA_L-elsbetiae_contig10887.810.1 vs. uniprot
Match: UPI000DF3E743 (uncharacterized protein LOC109202836 n=1 Tax=Oreochromis niloticus TaxID=8128 RepID=UPI000DF3E743)

HSP 1 Score: 57.0 bits (136), Expect = 3.940e-6
Identity = 45/170 (26.47%), Postives = 79/170 (46.47%), Query Frame = 1
Query:   97 VAATTPSNVLHHLNHHHKKEGRVKQALEDDAESAQDSTPKSGGGEIKKYIKRVGAPLSLTARNSYYGSYIVKDLEPLRTVESPNFRNMVRGL-MQNPKLELPGAYTMAQWVSEKAEEVRDIIREKIRRKQ-VCLTGDGWDATNGSGAFYSLTAHFTDPDTAELVSCTLAC 600
             A  + SN+L HL   H++       L + + S+ D+T  +   + K         +S          Y+V+++ PLRTVESP+FR ++  + +   K  LP   T + ++ +   ++   ++E     + +  T + W + N S  F  +TAH+TDP T       LAC
Sbjct:   45 AAVNSTSNLLKHLTRQHRQS-----LLSEPSSSSMDNTAATPAKQTKLDFTSATQKVSEGELKKMIAGYVVEEMLPLRTVESPSFRCILNKIPVCVKKAALPDRKTFSTYLDKCYADMEMELKETFESLEYISTTANIWTSHNKS--FLRMTAHWTDPSTFVRGHAALAC 207          
BLAST of mRNA_L-elsbetiae_contig10887.810.1 vs. uniprot
Match: I3JNG5_ORENI (BED-type domain-containing protein n=5 Tax=Osteoglossocephalai TaxID=1489341 RepID=I3JNG5_ORENI)

HSP 1 Score: 57.0 bits (136), Expect = 4.210e-6
Identity = 45/170 (26.47%), Postives = 79/170 (46.47%), Query Frame = 1
Query:   97 VAATTPSNVLHHLNHHHKKEGRVKQALEDDAESAQDSTPKSGGGEIKKYIKRVGAPLSLTARNSYYGSYIVKDLEPLRTVESPNFRNMVRGL-MQNPKLELPGAYTMAQWVSEKAEEVRDIIREKIRRKQ-VCLTGDGWDATNGSGAFYSLTAHFTDPDTAELVSCTLAC 600
             A  + SN+L HL   H++       L + + S+ D+T  +   + K         +S          Y+V+++ PLRTVESP+FR ++  + +   K  LP   T + ++ +   ++   ++E     + +  T + W + N S  F  +TAH+TDP T       LAC
Sbjct:   45 AAVNSTSNLLKHLTRQHRQS-----LLSEPSSSSMDNTAATPAKQTKLDFTSATQKVSEGELKKMIAGYVVEEMLPLRTVESPSFRCILNKIPVCVKKAALPDRKTFSTYLDKCYADMEMELKETFESLEYISTTANIWTSHNKS--FLRMTAHWTDPSTFVRGHAALAC 207          
BLAST of mRNA_L-elsbetiae_contig10887.810.1 vs. uniprot
Match: A0A672HL56_SALFA (Uncharacterized protein n=4 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672HL56_SALFA)

HSP 1 Score: 57.0 bits (136), Expect = 4.330e-6
Identity = 49/182 (26.92%), Postives = 81/182 (44.51%), Query Frame = 1
Query:   58 RSKMCLCGFYGKPVAATTPSNVLHHLNHHHKKEGRVKQALEDDAESAQDSTPKSGGGEIKKYIKRVGAPLSLTARNSYYGSYIVKDLEPLRTVESPNFRNMVRGLMQNPKLELPGAYTMAQWVSEKAEEVRDIIREKIRR-KQVCLTGDGWDATNGSGAFYSLTAHFTDPDTAELVSCTLAC 600
            R  +CL G      AA + SN+L HL   H     V +A   D     D++P++   +      R  A       N     YIV+D++P+ TVESP FR ++  L+     ++ G  T + ++  +  ++   +++       +  T D W   N S  F  +TAH+ +P T +     LAC
Sbjct:   84 RCNLCL-GTKTLSAAANSNSNLLKHLGTQHATTKLVAKASGSDT-GTDDTSPRAPKQQRLSSFLRGSATAIQAKVNQVIAGYIVEDMQPISTVESPAFRRII-DLIPGATRQM-GRKTFSNYLESEYTKMESELKQTFEGLSYISTTADIWTGHNRS--FMGVTAHWINPATLQRQKAALAC 259          
BLAST of mRNA_L-elsbetiae_contig10887.810.1 vs. uniprot
Match: A0A8C1W1S9_CYPCA (Uncharacterized protein n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1W1S9_CYPCA)

HSP 1 Score: 56.6 bits (135), Expect = 5.230e-6
Identity = 47/174 (27.01%), Postives = 80/174 (45.98%), Query Frame = 1
Query:   97 VAATTPSNVLHHLNHHHKKEGRVKQALEDDAESAQDSTP---KSGGGEIKKYIKRVGAPLSLTAR--NSYYGSYIVKDLEPLRTVESPNFRNMVRGLMQNPKLELPGAYTMAQWVSEKAEEVRDIIREKIRRKQ-VCLTGDGWDATNGSGAFYSLTAHFTDPDTAELVSCTLAC 600
             +  + SN++ HL   H     V  A   D  +  DS+P   K G G  K  +  +     +T    N   GSY+VK + PL TVE  +FR ++  + +   +  P + T A+++  +  ++   +++     + +  T D W A N S  +  +TAH+ DP + E     LAC
Sbjct:   13 TSVVSNSNLMKHLTTTHASTKLV--AKNTDTSTTDDSSPSTSKEGLGAQKLDLSALQQKPMMTQAEVNRMIGSYVVKSMLPLLTVEDDSFRAIIAKIPRKAGVCTPCSKTFAKYLDAEYAKMNTELKKSFEELEFLSTTADIWTAHNRS--YLGMTAHWLDPHSLEQKKAALAC 182          
BLAST of mRNA_L-elsbetiae_contig10887.810.1 vs. uniprot
Match: UPI00165C5B3A (uncharacterized protein LOC118560298 n=2 Tax=Fundulus heteroclitus TaxID=8078 RepID=UPI00165C5B3A)

HSP 1 Score: 55.5 bits (132), Expect = 1.380e-5
Identity = 49/191 (25.65%), Postives = 83/191 (43.46%), Query Frame = 1
Query:   37 FMKSTDPRSKMCLCGFYGKPVAATTPSNVLHHLNHHHKKEGRVKQALEDDAESAQDSTPKSGGGEIKKYIKRVGAPLSLTARNSYYGSYIVKDLEPLRTVESPNFRNMVRGL--MQNPKLELPGAYTMAQWVSEKAEEVRDIIREKIRRKQ-VCLTGDGWDATNGSGAFYSLTAHFTDPDTAELVSCTLAC 600
            F++  D ++ +  C    KP   +T  N   +L  H ++       L +  + A+D   K    ++  + +    PL           Y+V+D+ PL TVESP F+ +V  +    N K  LP   T A+ +      +   +++ I  +Q V  T D W A N S  F  +T H+ D +T +     +AC
Sbjct:   19 FVRDKDKKNVIVKCNLCVKPKELSTSRNSTSNLKKHLER-CHATTTLSEKRKIAEDERDKPKQQKLN-FSRPAIIPLEPREVRRLVAEYVVEDMLPLSTVESPAFKKLVSKIPVTTNDKHVLPCRTTFAKELDRTYTVMEKELKKTIDEQQYVSTTADIWTANNRS--FLGVTVHWIDSETLQRKKAAIAC 205          
BLAST of mRNA_L-elsbetiae_contig10887.810.1 vs. uniprot
Match: UPI001C2DF0C9 (uncharacterized protein LOC121812104 isoform X1 n=1 Tax=Haplochromis burtoni TaxID=8153 RepID=UPI001C2DF0C9)

HSP 1 Score: 54.3 bits (129), Expect = 2.530e-5
Identity = 44/169 (26.04%), Postives = 77/169 (45.56%), Query Frame = 1
Query:  100 AATTPSNVLHHLNHHHKKEGRVKQALEDDAESAQDSTPKSGGGEIKKYIKRVGAPLSLTARNSYYGSYIVKDLEPLRTVESPNFRNMVRGL-MQNPKLELPGAYTMAQWVSEKAEEVRDIIREKIRRKQ-VCLTGDGWDATNGSGAFYSLTAHFTDPDTAELVSCTLAC 600
            A  + SN+L HL   H++       L + + S+ D+T  +   + K         +S          Y+V+++ PLRTVESP+FR ++  + +   K  L    T + ++ +   ++   ++E     + +  T D W + N S  F  +TAH+ DP T       LAC
Sbjct:   44 AVNSTSNLLKHLTRQHRQS-----LLSEPSSSSMDNTAATPAKQTKLDFTSATQKVSEGELKKMIAGYVVEEMLPLRTVESPSFRCILNKIPVCGKKAALHDRKTFSTYLDKCYADMEMELKETFESLEYISTTADIWTSHNKS--FLGMTAHWIDPSTFVRGHAALAC 205          
BLAST of mRNA_L-elsbetiae_contig10887.810.1 vs. uniprot
Match: A0A8B8ER91_CRAVI (zinc finger BED domain-containing protein 1-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8ER91_CRAVI)

HSP 1 Score: 52.8 bits (125), Expect = 8.310e-5
Identity = 52/190 (27.37%), Postives = 86/190 (45.26%), Query Frame = 1
Query:   28 WRFFMKSTDPRSKMCLCGFYGKPVAATTPSNVLHHLNHHH----KKEGRVKQALEDDAESAQDSTPKSGGGEIKKYIKRVGA-----PLSLTAR-NSYYGSYIVKDLEPLRTVESPNFRNMVRGLMQNPKLELPGAYTMAQ-WVSEKAEEVRDIIREKIRRKQ-VCLTGDGWDATNGSGAFYSLTAHFTD 561
            W +F    + ++K  LC         TT  N++ HLN HH    + E  V      D  + Q + PK   G +K     + A     PLS T    +    YI+ DL P  T+ESP FR M+  L   P+ + P    +++  +    E ++  +  +++  + V LT DGW  +  + +F ++T HF +
Sbjct:    9 WNYFCNEKNRQAKCNLCSAVVATSGGTT--NLIFHLNRHHNISLRSETTVTTRASGDV-AQQPTEPKCEPG-VKTNPWTLSASQRKLPLSRTNEITTAVLQYIIHDLRPFSTIESPVFRKMLSTL--EPRYQPPNRTRLSEELIPALYESIKSKLYAELQSSEAVSLTCDGW-TSRATQSFLTVTCHFVN 191          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10887.810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A7T8KJ69_CALRO6.160e-828.99Uncharacterized protein n=1 Tax=Caligus rogercress... [more]
A0A672FF88_SALFA8.340e-826.60BED-type domain-containing protein n=3 Tax=Salaria... [more]
UPI000DF3E7433.940e-626.47uncharacterized protein LOC109202836 n=1 Tax=Oreoc... [more]
I3JNG5_ORENI4.210e-626.47BED-type domain-containing protein n=5 Tax=Osteogl... [more]
A0A672HL56_SALFA4.330e-626.92Uncharacterized protein n=4 Tax=Salarias fasciatus... [more]
A0A8C1W1S9_CYPCA5.230e-627.01Uncharacterized protein n=1 Tax=Cyprinus carpio Ta... [more]
UPI00165C5B3A1.380e-525.65uncharacterized protein LOC118560298 n=2 Tax=Fundu... [more]
UPI001C2DF0C92.530e-526.04uncharacterized protein LOC121812104 isoform X1 n=... [more]
A0A8B8ER91_CRAVI8.310e-527.37zinc finger BED domain-containing protein 1-like n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10887contigL-elsbetiae_contig10887:6029..6628 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score62.0
Seed ortholog evalue3.6e-07
Seed eggNOG ortholog7955.ENSDARP00000101134
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein dimerization activity
EggNOG OGs3AS1B@33154,3C3Y0@33208,3DKFV@33213,48RUT@7711,49N8D@7742,4A8P4@7898,KOG1121@1,KOG1121@2759
COG Functional cat.L
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
Exons1
Model size600
Cds size600
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815306.2375321-CDS-L-elsbetiae_contig10887:6028..66281622815306.2375321-CDS-L-elsbetiae_contig10887:6028..6628Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10887 6029..6628 +
1691682828.823598-CDS-L-elsbetiae_contig10887:6028..66281691682828.823598-CDS-L-elsbetiae_contig10887:6028..6628Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10887 6029..6628 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10887.810.1prot_L-elsbetiae_contig10887.810.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10887 6029..6628 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10887.810.1

>prot_L-elsbetiae_contig10887.810.1 ID=prot_L-elsbetiae_contig10887.810.1|Name=mRNA_L-elsbetiae_contig10887.810.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=200bp
RNKRSKKWYWRFFMKSTDPRSKMCLCGFYGKPVAATTPSNVLHHLNHHHK
KEGRVKQALEDDAESAQDSTPKSGGGEIKKYIKRVGAPLSLTARNSYYGS
YIVKDLEPLRTVESPNFRNMVRGLMQNPKLELPGAYTMAQWVSEKAEEVR
DIIREKIRRKQVCLTGDGWDATNGSGAFYSLTAHFTDPDTAELVSCTLAC
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mRNA from alignment at L-elsbetiae_contig10887:6029..6628+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10887.810.1 ID=mRNA_L-elsbetiae_contig10887.810.1|Name=mRNA_L-elsbetiae_contig10887.810.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig10887:6029..6628+ (Laminarionema elsbetiae ELsaHSoW15)
CGCAACAAGAGAAGCAAGAAGTGGTACTGGCGGTTCTTCATGAAGTCGAC AGACCCCAGATCCAAGATGTGCTTGTGTGGCTTCTACGGCAAGCCAGTCG CCGCAACTACCCCGTCGAACGTGCTCCATCACCTCAACCACCACCACAAG AAGGAAGGGCGCGTCAAACAGGCTCTCGAAGATGACGCAGAGAGCGCCCA GGACAGCACGCCAAAGTCCGGCGGCGGGGAGATAAAGAAGTACATCAAGA GAGTAGGGGCTCCTCTTTCGCTCACCGCGCGGAACTCCTACTACGGCTCC TACATCGTGAAGGACCTGGAGCCGTTGCGGACTGTGGAGTCACCCAACTT CCGAAACATGGTGAGGGGGTTGATGCAGAACCCCAAACTGGAGTTGCCGG GCGCTTACACCATGGCGCAGTGGGTTTCTGAGAAAGCTGAAGAAGTGCGG GACATCATCAGGGAGAAGATTCGTCGGAAACAAGTTTGTCTCACGGGCGA TGGGTGGGACGCCACCAACGGGAGCGGGGCGTTCTACTCCCTCACTGCGC ACTTCACCGACCCGGACACTGCCGAGCTGGTTTCGTGCACGCTCGCATGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10887:6029..6628+

>mRNA_L-elsbetiae_contig10887.810.1 ID=mRNA_L-elsbetiae_contig10887.810.1|Name=mRNA_L-elsbetiae_contig10887.810.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1200bp|location=Sequence derived from alignment at L-elsbetiae_contig10887:6029..6628+ (Laminarionema elsbetiae ELsaHSoW15)
CGCAACAAGAGAAGCAAGAAGTGGTACTGGCGGTTCTTCATGAAGTCGAC
AGACCCCAGATCCAAGATGTGCTTGTGTGGCTTCTACGGCAAGCCAGTCG
CCGCAACTACCCCGTCGAACGTGCTCCATCACCTCAACCACCACCACAAG
AAGGAAGGGCGCGTCAAACAGGCTCTCGAAGATGACGCAGAGAGCGCCCA
GGACAGCACGCCAAAGTCCGGCGGCGGGGAGATAAAGAAGTACATCAAGA
GAGTAGGGGCTCCTCTTTCGCTCACCGCGCGGAACTCCTACTACGGCTCC
TACATCGTGAAGGACCTGGAGCCGTTGCGGACTGTGGAGTCACCCAACTT
CCGAAACATGGTGAGGGGGTTGATGCAGAACCCCAAACTGGAGTTGCCGG
GCGCTTACACCATGGCGCAGTGGGTTTCTGAGAAAGCTGAAGAAGTGCGG
GACATCATCAGGGAGAAGATTCGTCGGAAACAAGTTTGTCTCACGGGCGA
TGGGTGGGACGCCACCAACGGGAGCGGGGCGTTCTACTCCCTCACTGCGC
ACTTCACCGACCCGGACACTGCCGAGCTGGTTTCGTGCACGCTCGCATGT
CGCAACAAGAGAAGCAAGAAGTGGTACTGGCGGTTCTTCATGAAGTCGAC
AGACCCCAGATCCAAGATGTGCTTGTGTGGCTTCTACGGCAAGCCAGTCG
CCGCAACTACCCCGTCGAACGTGCTCCATCACCTCAACCACCACCACAAG
AAGGAAGGGCGCGTCAAACAGGCTCTCGAAGATGACGCAGAGAGCGCCCA
GGACAGCACGCCAAAGTCCGGCGGCGGGGAGATAAAGAAGTACATCAAGA
GAGTAGGGGCTCCTCTTTCGCTCACCGCGCGGAACTCCTACTACGGCTCC
TACATCGTGAAGGACCTGGAGCCGTTGCGGACTGTGGAGTCACCCAACTT
CCGAAACATGGTGAGGGGGTTGATGCAGAACCCCAAACTGGAGTTGCCGG
GCGCTTACACCATGGCGCAGTGGGTTTCTGAGAAAGCTGAAGAAGTGCGG
GACATCATCAGGGAGAAGATTCGTCGGAAACAAGTTTGTCTCACGGGCGA
TGGGTGGGACGCCACCAACGGGAGCGGGGCGTTCTACTCCCTCACTGCGC
ACTTCACCGACCCGGACACTGCCGAGCTGGTTTCGTGCACGCTCGCATGT
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