mRNA_L-elsbetiae_contig10789.733.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10789.733.1
Unique NamemRNA_L-elsbetiae_contig10789.733.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10789.733.1 vs. uniprot
Match: A0A6H5KGI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGI3_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 3.670e-18
Identity = 90/141 (63.83%), Postives = 101/141 (71.63%), Query Frame = 2 
Query:  209 LCAAVLSAGLTATSAFISTTTIPMASSGLALRPQRPQSGSGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIGGEGLAEVGTALSGAVGQAHASVMGSGLGTFLL-ADDP-APPNIFGEVAQG*EGARELFLGVF 625
            L  A+L AGLTATSAF+STT  P+ SS L+ R              XXXXXXXXXXXXXXXXXXXXXX        G+GGEGLAE+G+ +SGAVGQAHAS MGSG+GTFLL ADDP APPNI+GEVAQG  G   +F GVF
Sbjct:    9 LLGALLGAGLTATSAFVSTT--PVVSSSLSAR-----------QLVXXXXXXXXXXXXXXXXXXXXXXRAMLFGGGGVGGEGLAELGSMVSGAVGQAHASAMGSGMGTFLLLADDPPAPPNIYGEVAQG--GFFIIFSGVF 134
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10789.733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KGI3_9PHAE3.670e-1863.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10789contigL-elsbetiae_contig10789:3754..5940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_002670.1
Exons2
Model size719
Cds size423
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10789.733.1prot_L-elsbetiae_contig10789.733.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10789 3923..5813 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815297.5739365-UTR-L-elsbetiae_contig10789:3753..39221622815297.5739365-UTR-L-elsbetiae_contig10789:3753..3922Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10789 3754..3922 +
1691682823.4233515-UTR-L-elsbetiae_contig10789:3753..39221691682823.4233515-UTR-L-elsbetiae_contig10789:3753..3922Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10789 3754..3922 +
1622815297.601302-UTR-L-elsbetiae_contig10789:5813..59401622815297.601302-UTR-L-elsbetiae_contig10789:5813..5940Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10789 5814..5940 +
1691682823.4569833-UTR-L-elsbetiae_contig10789:5813..59401691682823.4569833-UTR-L-elsbetiae_contig10789:5813..5940Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10789 5814..5940 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815297.5834222-CDS-L-elsbetiae_contig10789:3922..40141622815297.5834222-CDS-L-elsbetiae_contig10789:3922..4014Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10789 3923..4014 +
1691682823.4343617-CDS-L-elsbetiae_contig10789:3922..40141691682823.4343617-CDS-L-elsbetiae_contig10789:3922..4014Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10789 3923..4014 +
1622815297.5925236-CDS-L-elsbetiae_contig10789:5482..58131622815297.5925236-CDS-L-elsbetiae_contig10789:5482..5813Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10789 5483..5813 +
1691682823.4447958-CDS-L-elsbetiae_contig10789:5482..58131691682823.4447958-CDS-L-elsbetiae_contig10789:5482..5813Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10789 5483..5813 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10789.733.1

>prot_L-elsbetiae_contig10789.733.1 ID=prot_L-elsbetiae_contig10789.733.1|Name=mRNA_L-elsbetiae_contig10789.733.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=141bp
MHLFIGTSSVMILLCAAVLSAGLTATSAFISTTTIPMASSGLALRPQRPQ
SGSGSTAAAAAAAAAAAAATARGPRRTAAATASMMLGGGGIGGEGLAEVG
TALSGAVGQAHASVMGSGLGTFLLADDPAPPNIFGEVAQG*
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mRNA from alignment at L-elsbetiae_contig10789:3754..5940+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10789.733.1 ID=mRNA_L-elsbetiae_contig10789.733.1|Name=mRNA_L-elsbetiae_contig10789.733.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2187bp|location=Sequence derived from alignment at L-elsbetiae_contig10789:3754..5940+ (Laminarionema elsbetiae ELsaHSoW15)
CGGAGCCGCGGCTCGGGCAGCGGGCAGAGAGCGGAGAAGGAGTCATCGAG
CGAGAGAGGAACACGGCTGTGACGATAGTCAGTGACAGGAGGGTCAAACT
GCAGAATTTTCGCTCACGATACAGGGGACACCCAACGTGGACAGGAAAAG
TGCGCCGAGGGCGTGAATCATGCACCTCTTCATCGGCACCAGCAGCGTCA
TGATCCTCCTCTGCGCGGCTGTCCTATCGGCTGGGTTGACCGCCACCTCT
GCATTCATCTCGTAAGTTGCACGGGGCAGCGCTCATGGGTATGGCCTAGA
ATATCGCACGGTGCTCAACGGGTACACTGAATCGATGACACAGCAGGTTG
AACTGGGCCTTCCACAAATCCTCCTCTCGCTCCCACGTGTATGCACCTAA
ACACTAAATACACCGCTTCGTGTGCCCGGTGTTTATCAAGGCACACACAT
ACGCTGCACAGCCATTTATGTACAGATTTTCTTCCCGGAGCCCGCCCAGA
GCGCGAAAGTTGATCGACATCCTCGTGTACACATGCCCATAGACGTGAAA
ACCAGAGATGTGTTCTTTCTCTCTCTGTGTGATGCTTGCCATGGTGCATA
CCAGCTACCACCCCGTTCAGTCAACACGCCAAAACCCTACGCTCTGGGTG
TTACAGAAGCCTTGCCAAGCCTCTCTCTCAACCTGTACAACGCCTAAGTT
GCTGTTGCTGATTTGGAGTTGCTATCGCCGGAAAATAGGGGTATCCCGCT
CTTAGCCGCCGTCCCCCCCTCCGGATCAGATCTTAAAAATCATAGACAGA
GTTTCGTTGGTACATCCAGAGGGAGGTTCCGCCGCCTTATTTTTGCCTGG
CGGGAACATGACGTTTTTTGCGCCCGCTTGAGAAACCGTTCAACAAACCA
CTTGGATACACAAAGGGCAGAGCAGCTGGCAGACAAAGCACCACGATAAC
TCAGCCTTCGCAGGTCAATCCGGTCTGCCACATACTACCCTGTAGCCAGG
ATAAGAGAGATGCAAGAACCTGGTGAAAGAGGGAGAGAACAGGAAAATTG
TAAAAATGAGAGAGAGCCAGCACAAAGCGGGGCACGGTGAATCCCTCAAC
GTACACATTCAGCAAGTCAAAGAGGGTTTGCAGCATCGCGAATTTCGGCC
CGTACATAGATGTCAAGCCCTGGATATGCTTTGGTTGGTGATAGCTATGT
AGGGGTATAACCTGTCCTGCTGACCCCAAGGGTCGGGGCGCAAATGATAA
CTTTTCCCCGAAGTCGCTCCTTCCCTTGGACCAACCGAAGTTTCAGCGGG
GGTATTTTGTATCACACCTGGAACGCACACACGCAAGTACAAATATCCCA
GCAGCGCCACTTCGGGTATCCAATAACATCTCGTGCCTTCCAGGCAGCAT
TGGTTAGGTGGTGGACTGGCGAAACGCGAAAACACTTTTACGGGGCTTAC
AAGTGTCTGGCCCCGCCTGCCTGAAACGCCTCTGTATCTCCTGCCTGCAT
GGTTTTCCCAAAACGCTATTTTGCCCCCCCGGCCTACACAACCTCTCCCC
GACCGTAATTTTGTTTTTTAAGCCCGTTGCCGATAGAACAGGCTACCACC
CACAACCGCGCCCCCACATGTACATATGTGTATAAGGAAACCCGTATTCC
TTCGCCCAACAAACACACCCTCCCCCCCCCACGGAATCTTGCCACCCGTC
GCCCCTTTGCTCTCCAATTTCCTCCGCAGGACGACCACGATTCCCATGGC
GTCCTCAGGCCTCGCCCTTCGCCCGCAGCGCCCGCAAAGCGGGAGTGGCA
GCACGGCGGCCGCGGCGGCAGCCGCGGCAGCAGCAGCAGCAGCTACCGCA
CGAGGCCCTCGGCGGACAGCGGCAGCGACAGCCTCCATGATGCTCGGAGG
TGGGGGAATAGGCGGGGAGGGGCTGGCGGAGGTTGGAACGGCGCTCTCTG
GCGCCGTCGGGCAGGCGCACGCGAGCGTGATGGGCTCGGGCTTGGGTACG
TTCCTCCTCGCGGATGACCCGGCGCCCCCCAACATCTTCGGCGAGGTCGC
GCAGGGGTGAGAGGGAGCGCGAGAGCTGTTTCTCGGGGTCTTTTTAATTG
TTGTGTGCTTTTTGGTGGGTGGAGTCGACACCGGCCACAAGCTTTTCAGG
CGGGGCAAGGATAGGATGGACGGACGTCTTGGGAAGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10789:3754..5940+

>mRNA_L-elsbetiae_contig10789.733.1 ID=mRNA_L-elsbetiae_contig10789.733.1|Name=mRNA_L-elsbetiae_contig10789.733.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=846bp|location=Sequence derived from alignment at L-elsbetiae_contig10789:3754..5940+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACCTCTTCATCGGCACCAGCAGCGTCATGATCCTCCTCTGCGCGGC
TGTCCTATCGGCTGGGTTGACCGCCACCTCTGCATTCATCTCATGCACCT
CTTCATCGGCACCAGCAGCGTCATGATCCTCCTCTGCGCGGCTGTCCTAT
CGGCTGGGTTGACCGCCACCTCTGCATTCATCTCGACGACCACGATTCCC
ATGGCGTCCTCAGGCCTCGCCCTTCGCCCGCAGCGCCCGCAAAGCGGGAG
TGGCAGCACGGCGGCCGCGGCGGCAGCCGCGGCAGCAGCAGCAGCAGCTA
CCGCACGAGGCCCTCGGCGGACAGCGGCAGCGACAGCCTCCATGATGCTC
GGAGGTGGGGGAATAGGCGGGGAGGGGCTGGCGGAGGTTGGAACGGCGCT
CTCTGGCGCCGTCGGGCAGGCGCACGCGAGCGTGATGGGCTCGGGCTTGG
GTACGTTCCTCCTCGCGGATGACCCGGCGCCCCCCAACATCTTCGGCGAG
GTCGCGCAGGGGTGAGACGACCACGATTCCCATGGCGTCCTCAGGCCTCG
CCCTTCGCCCGCAGCGCCCGCAAAGCGGGAGTGGCAGCACGGCGGCCGCG
GCGGCAGCCGCGGCAGCAGCAGCAGCAGCTACCGCACGAGGCCCTCGGCG
GACAGCGGCAGCGACAGCCTCCATGATGCTCGGAGGTGGGGGAATAGGCG
GGGAGGGGCTGGCGGAGGTTGGAACGGCGCTCTCTGGCGCCGTCGGGCAG
GCGCACGCGAGCGTGATGGGCTCGGGCTTGGGTACGTTCCTCCTCGCGGA
TGACCCGGCGCCCCCCAACATCTTCGGCGAGGTCGCGCAGGGGTGA
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