prot_L-elsbetiae_contig10789.733.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig10789.733.1
Unique Nameprot_L-elsbetiae_contig10789.733.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length141
Homology
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BLAST of mRNA_L-elsbetiae_contig10789.733.1 vs. uniprot
Match: A0A6H5KGI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGI3_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 4.960e-18
Identity = 84/126 (66.67%), Postives = 94/126 (74.60%), Query Frame = 0 
Query:   17 AVLSAGLTATSAFISTTTIPMASSGLALRPQRPQSGSGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIGGEGLAEVGTALSGAVGQAHASVMGSGLGTFLL-ADDP-APPNIFGEVAQG 140
            A+L AGLTATSAF+STT  P+ SS L+ R              XXXXXXXXXXXXXXXXXXXXXX        G+GGEGLAE+G+ +SGAVGQAHAS MGSG+GTFLL ADDP APPNI+GEVAQG
Sbjct:   12 ALLGAGLTATSAFVSTT--PVVSSSLSAR-----------QLVXXXXXXXXXXXXXXXXXXXXXXRAMLFGGGGVGGEGLAELGSMVSGAVGQAHASAMGSGMGTFLLLADDPPAPPNIYGEVAQG 124
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10789.733.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KGI3_9PHAE4.960e-1866.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 24..28
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..140
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 12..23
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..28
score: 0.572
NoneNo IPR availableTMHMMTMhelixcoord: 10..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10789contigL-elsbetiae_contig10789:3923..5813 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10789.733.1mRNA_L-elsbetiae_contig10789.733.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig10789 3754..5940 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig10789.733.1 ID=prot_L-elsbetiae_contig10789.733.1|Name=mRNA_L-elsbetiae_contig10789.733.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=141bp
MHLFIGTSSVMILLCAAVLSAGLTATSAFISTTTIPMASSGLALRPQRPQ
SGSGSTAAAAAAAAAAAAATARGPRRTAAATASMMLGGGGIGGEGLAEVG
TALSGAVGQAHASVMGSGLGTFLLADDPAPPNIFGEVAQG*
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