mRNA_L-elsbetiae_contig10.7.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10.7.1
Unique NamemRNA_L-elsbetiae_contig10.7.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10.7.1 vs. uniprot
Match: A0A6B7EVB8_9PHAE (Cytochrome c6 n=3 Tax=Ectocarpales TaxID=2877 RepID=A0A6B7EVB8_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 5.990e-66
Identity = 98/109 (89.91%), Postives = 103/109 (94.50%), Query Frame = 1
Query:    1 MKNFFFGFFISCLVLISFCNPAGAVDINNGGSVFTANCSACHSGGNNVIMPEKTLKKDALGANQMNSVDAITYQVTNGKNAMPAFGGRLSEDDIQDVANYVLSQSEKGW 327
            MKNFF GFFISCL +ISF NPA AVDINNG SVFTANCSACH+GGNNVIMPEKTLKKDALG NQMNSV+AITYQVTNGKNAMPAFGGRLSE+DIQDVAN+VLSQSEKGW
Sbjct:    1 MKNFFLGFFISCLAMISFYNPAEAVDINNGESVFTANCSACHAGGNNVIMPEKTLKKDALGTNQMNSVNAITYQVTNGKNAMPAFGGRLSEEDIQDVANFVLSQSEKGW 109          
BLAST of mRNA_L-elsbetiae_contig10.7.1 vs. uniprot
Match: A0A8F0F8D4_9PHAE (Cytochrome c6 n=4 Tax=Alariaceae TaxID=2887 RepID=A0A8F0F8D4_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 8.390e-62
Identity = 92/111 (82.88%), Postives = 102/111 (91.89%), Query Frame = 1
Query:    1 MKNFFFGFFISCLVLISFCNPAGAV-DINNGGSVFTANCSACHSGGNNVIMPEKTLKKDALGANQMNSVDAITYQVTNGKNAMPAFGGRLSEDDIQDVANYVLSQSEKGWD 330
            MKNFFFGFFI+CL LISF NPA AV D+NNG ++FTANCSACH+GGNNVIMPEKTLKKDAL  NQMNS+ AITYQVTNGKNAMPAFGGRLSE DI+DVAN+VLSQ++KGWD
Sbjct:    1 MKNFFFGFFIACLALISFQNPAQAVPDLNNGSNIFTANCSACHAGGNNVIMPEKTLKKDALATNQMNSISAITYQVTNGKNAMPAFGGRLSEPDIEDVANFVLSQADKGWD 111          
BLAST of mRNA_L-elsbetiae_contig10.7.1 vs. uniprot
Match: A0A6G6D7E1_ECTSI (Cytochrome c6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=A0A6G6D7E1_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 9.490e-61
Identity = 92/110 (83.64%), Postives = 100/110 (90.91%), Query Frame = 1
Query:    1 MKNFFFGFFISCLVLISFCNPAGAVDINNGGSVFTANCSACHSGGNNVIMPEKTLKKDALGANQMNSVDAITYQVTNGKNAMPAFGGRLSEDDIQDVANYVLSQSEKGWD 330
            MKNFF GFFISCL LISF N A AVDINNG SVF ANCSACH+GGNNVIMPEKTL+K+ALGAN MNSV+AITYQVTNGKNAMPAFGGRLSE DI+DVAN+VLS++E GWD
Sbjct:    1 MKNFFLGFFISCLALISFYNSAEAVDINNGESVFVANCSACHAGGNNVIMPEKTLRKEALGANNMNSVNAITYQVTNGKNAMPAFGGRLSEPDIEDVANFVLSKAEGGWD 110          
BLAST of mRNA_L-elsbetiae_contig10.7.1 vs. uniprot
Match: A0A0S0GBE4_COSCS (Cytochrome c6 n=20 Tax=Laminariales TaxID=2886 RepID=A0A0S0GBE4_COSCS)

HSP 1 Score: 189 bits (480), Expect = 1.920e-60
Identity = 90/110 (81.82%), Postives = 101/110 (91.82%), Query Frame = 1
Query:    1 MKNFFFGFFISCLVLISFCNPAGAVDINNGGSVFTANCSACHSGGNNVIMPEKTLKKDALGANQMNSVDAITYQVTNGKNAMPAFGGRLSEDDIQDVANYVLSQSEKGWD 330
            MKNFFFGFFI+CL LISF NPA AVDINNG +VFTANCSACH+GGNNVIMPEKTLKK+AL  N+M+SV AITYQVTNGKNAMPAFGGRL+E DI+DVAN+VLSQS+K W+
Sbjct:    1 MKNFFFGFFIACLALISFQNPAQAVDINNGENVFTANCSACHAGGNNVIMPEKTLKKEALSQNKMDSVSAITYQVTNGKNAMPAFGGRLAESDIEDVANFVLSQSDKNWE 110          
BLAST of mRNA_L-elsbetiae_contig10.7.1 vs. uniprot
Match: A0A5A4MJ73_9PHAE (Cytochrome c6 n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A5A4MJ73_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 2.720e-60
Identity = 93/109 (85.32%), Postives = 97/109 (88.99%), Query Frame = 1
Query:    1 MKNFFFGFFISCLVLISFCNPAGAVDINNGGSVFTANCSACHSGGNNVIMPEKTLKKDALGANQMNSVDAITYQVTNGKNAMPAFGGRLSEDDIQDVANYVLSQSEKGW 327
            MKNFF GFFISCL LISF NPA AVDINNG SVFTANCSACH+GGNNVIMPEKTLKK AL  NQM SV AITYQVTNGKNAMPAFGGRLSE DI+DVAN+VLSQS+K W
Sbjct:    1 MKNFFLGFFISCLTLISFYNPAEAVDINNGESVFTANCSACHAGGNNVIMPEKTLKKGALEENQMGSVKAITYQVTNGKNAMPAFGGRLSESDIEDVANFVLSQSDKDW 109          
BLAST of mRNA_L-elsbetiae_contig10.7.1 vs. uniprot
Match: A0A8E8U4P1_9PHAE (Cytochrome c6 n=3 Tax=Alaria TaxID=2888 RepID=A0A8E8U4P1_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 2.720e-60
Identity = 87/110 (79.09%), Postives = 101/110 (91.82%), Query Frame = 1
Query:    1 MKNFFFGFFISCLVLISFCNPAGAVDINNGGSVFTANCSACHSGGNNVIMPEKTLKKDALGANQMNSVDAITYQVTNGKNAMPAFGGRLSEDDIQDVANYVLSQSEKGWD 330
            MKNFFFGFFI+CL LISF NPA A+DINNG ++FTANCSACH+GGNNVIMPEKTLKKDAL  N+MN++ AITYQVTNGKNAMPAFG RL+E DI+DVAN+V++QS+KGWD
Sbjct:    1 MKNFFFGFFIACLALISFQNPAQAIDINNGENIFTANCSACHAGGNNVIMPEKTLKKDALADNKMNTIGAITYQVTNGKNAMPAFGSRLAETDIEDVANFVITQSDKGWD 110          
BLAST of mRNA_L-elsbetiae_contig10.7.1 vs. uniprot
Match: A0A8F0JZA5_9PHAE (Cytochrome c6 n=2 Tax=Ecklonia TaxID=105406 RepID=A0A8F0JZA5_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 1.110e-59
Identity = 91/110 (82.73%), Postives = 100/110 (90.91%), Query Frame = 1
Query:    1 MKNFFFGFFISCLVLISFCNPAGAVDINNGGSVFTANCSACHSGGNNVIMPEKTLKKDALGANQMNSVDAITYQVTNGKNAMPAFGGRLSEDDIQDVANYVLSQSEKGWD 330
            MKNFFFGFFI+ L LISF N A AVDINNGG++FTANCSACH+GGNNVIM EKTLKKDAL  NQMNSV AITYQVTNGKNAMPAFGGRL+E DI+DVAN+VLS+SE+GWD
Sbjct:    1 MKNFFFGFFIASLALISFQNSAQAVDINNGGNIFTANCSACHAGGNNVIMIEKTLKKDALSDNQMNSVKAITYQVTNGKNAMPAFGGRLAESDIEDVANFVLSKSEEGWD 110          
BLAST of mRNA_L-elsbetiae_contig10.7.1 vs. uniprot
Match: A0A8F0F6Q3_AKKLU (Cytochrome c6 n=1 Tax=Akkesiphycus lubricus TaxID=3022 RepID=A0A8F0F6Q3_AKKLU)

HSP 1 Score: 186 bits (473), Expect = 2.240e-59
Identity = 90/110 (81.82%), Postives = 99/110 (90.00%), Query Frame = 1
Query:    1 MKNFFFGFFISCLVLISFCNPAGAVDINNGGSVFTANCSACHSGGNNVIMPEKTLKKDALGANQMNSVDAITYQVTNGKNAMPAFGGRLSEDDIQDVANYVLSQSEKGWD 330
            MK FFFGFFI+CL LIS  NPA AVDINNG ++FTANCSACH+GGNNVIMPEKTLKK+AL  N MNSV AITYQVTNGKNAMPAFGGRLSEDDI+DVAN+VL+QS KGW+
Sbjct:    1 MKKFFFGFFIACLTLISSHNPAQAVDINNGENIFTANCSACHAGGNNVIMPEKTLKKNALEENSMNSVGAITYQVTNGKNAMPAFGGRLSEDDIEDVANFVLAQSGKGWE 110          
BLAST of mRNA_L-elsbetiae_contig10.7.1 vs. uniprot
Match: A0A516ICP1_9PHAE (Cytochrome c6 n=2 Tax=Lessonia TaxID=105411 RepID=A0A516ICP1_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 1.840e-58
Identity = 90/110 (81.82%), Postives = 97/110 (88.18%), Query Frame = 1
Query:    1 MKNFFFGFFISCLVLISFCNPAGAVDINNGGSVFTANCSACHSGGNNVIMPEKTLKKDALGANQMNSVDAITYQVTNGKNAMPAFGGRLSEDDIQDVANYVLSQSEKGWD 330
            MKNFFFGFFI CL LISF NPA AVDINNG +VF ANCSACH GG NVIM +KTLKKDAL  N MN+VDAITYQVTNGKNAMPAFGGRL+E DIQDVAN+VLS+S+KGWD
Sbjct:    1 MKNFFFGFFIVCLALISFQNPAQAVDINNGENVFVANCSACHVGGANVIMVDKTLKKDALDRNSMNTVDAITYQVTNGKNAMPAFGGRLAETDIQDVANFVLSKSDKGWD 110          
BLAST of mRNA_L-elsbetiae_contig10.7.1 vs. uniprot
Match: A0A8F0JYP6_9PHAE (Cytochrome c6 n=1 Tax=Pseudochorda nagaii TaxID=74379 RepID=A0A8F0JYP6_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 3.050e-57
Identity = 87/109 (79.82%), Postives = 96/109 (88.07%), Query Frame = 1
Query:    1 MKNFFFGFFISCLVLISFCNPAGAVDINNGGSVFTANCSACHSGGNNVIMPEKTLKKDALGANQMNSVDAITYQVTNGKNAMPAFGGRLSEDDIQDVANYVLSQSEKGW 327
            MK FFFGFFI+CL LIS  NPA AVDINNG ++FTANCSACH+GGNNVIMPEKTLKK+AL  N MN V+AITYQVTNGKNAMPAFG RLSEDDI+DVAN+VLSQ+ K W
Sbjct:    1 MKKFFFGFFIACLTLISSHNPAQAVDINNGENIFTANCSACHAGGNNVIMPEKTLKKEALSDNLMNKVEAITYQVTNGKNAMPAFGSRLSEDDIEDVANFVLSQAAKDW 109          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B7EVB8_9PHAE5.990e-6689.91Cytochrome c6 n=3 Tax=Ectocarpales TaxID=2877 RepI... [more]
A0A8F0F8D4_9PHAE8.390e-6282.88Cytochrome c6 n=4 Tax=Alariaceae TaxID=2887 RepID=... [more]
A0A6G6D7E1_ECTSI9.490e-6183.64Cytochrome c6 n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A0S0GBE4_COSCS1.920e-6081.82Cytochrome c6 n=20 Tax=Laminariales TaxID=2886 Rep... [more]
A0A5A4MJ73_9PHAE2.720e-6085.32Cytochrome c6 n=5 Tax=Scytosiphonaceae TaxID=2891 ... [more]
A0A8E8U4P1_9PHAE2.720e-6079.09Cytochrome c6 n=3 Tax=Alaria TaxID=2888 RepID=A0A8... [more]
A0A8F0JZA5_9PHAE1.110e-5982.73Cytochrome c6 n=2 Tax=Ecklonia TaxID=105406 RepID=... [more]
A0A8F0F6Q3_AKKLU2.240e-5981.82Cytochrome c6 n=1 Tax=Akkesiphycus lubricus TaxID=... [more]
A0A516ICP1_9PHAE1.840e-5881.82Cytochrome c6 n=2 Tax=Lessonia TaxID=105411 RepID=... [more]
A0A8F0JYP6_9PHAE3.050e-5779.82Cytochrome c6 n=1 Tax=Pseudochorda nagaii TaxID=74... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10contigL-elsbetiae_contig10:13076..13408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.5
Seed ortholog evalue2.6e-47
Seed eggNOG ortholog2880.D1J772
Preferred namepetJ
KEGG koko:K08906
KEGG Pathwayko00195,map00195
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Cytochrome C oxidase, cbb3-type, subunit III
EggNOG OGs2SB8G@2759,COG2010@1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Exons1
Model size333
Cds size333
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815231.638831-CDS-L-elsbetiae_contig10:13075..134081622815231.638831-CDS-L-elsbetiae_contig10:13075..13408Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10 13076..13408 +
1691682783.7117188-CDS-L-elsbetiae_contig10:13075..134081691682783.7117188-CDS-L-elsbetiae_contig10:13075..13408Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10 13076..13408 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10.7.1prot_L-elsbetiae_contig10.7.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10 13076..13408 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10.7.1

>prot_L-elsbetiae_contig10.7.1 ID=prot_L-elsbetiae_contig10.7.1|Name=mRNA_L-elsbetiae_contig10.7.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
MKNFFFGFFISCLVLISFCNPAGAVDINNGGSVFTANCSACHSGGNNVIM
PEKTLKKDALGANQMNSVDAITYQVTNGKNAMPAFGGRLSEDDIQDVANY
VLSQSEKGWD*
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mRNA from alignment at L-elsbetiae_contig10:13076..13408+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10.7.1 ID=mRNA_L-elsbetiae_contig10.7.1|Name=mRNA_L-elsbetiae_contig10.7.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=333bp|location=Sequence derived from alignment at L-elsbetiae_contig10:13076..13408+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAAAATTTTTTTTTTGGTTTCTTTATCTCATGCTTAGTGCTAATTAG TTTTTGTAACCCAGCAGGAGCTGTAGATATTAATAATGGCGGAAGTGTTT TCACTGCTAACTGTTCTGCATGTCACAGTGGTGGGAATAATGTTATTATG CCTGAAAAAACTTTGAAAAAAGACGCATTAGGGGCAAACCAAATGAATAG TGTTGACGCAATTACTTATCAAGTAACAAACGGAAAAAATGCCATGCCAG CTTTTGGTGGTCGCTTATCTGAAGATGACATACAAGATGTAGCTAATTAT GTTTTATCTCAATCTGAGAAAGGTTGGGATTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10:13076..13408+

>mRNA_L-elsbetiae_contig10.7.1 ID=mRNA_L-elsbetiae_contig10.7.1|Name=mRNA_L-elsbetiae_contig10.7.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig10:13076..13408+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAAAATTTTTTTTTTGGTTTCTTTATCTCATGCTTAGTGCTAATTAG
TTTTTGTAACCCAGCAGGAGCTGTAGATATTAATAATGGCGGAAGTGTTT
TCACTGCTAACTGTTCTGCATGTCACAGTGGTGGGAATAATGTTATTATG
CCTGAAAAAACTTTGAAAAAAGACGCATTAGGGGCAAACCAAATGAATAG
TGTTGACGCAATTACTTATCAAGTAACAAACGGAAAAAATGCCATGCCAG
CTTTTGGTGGTCGCTTATCTGAAGATGACATACAAGATGTAGCTAATTAT
GTTTTATCTCAATCTGAGAAAGGTTGGGATTAAATGAAAAATTTTTTTTT
TGGTTTCTTTATCTCATGCTTAGTGCTAATTAGTTTTTGTAACCCAGCAG
GAGCTGTAGATATTAATAATGGCGGAAGTGTTTTCACTGCTAACTGTTCT
GCATGTCACAGTGGTGGGAATAATGTTATTATGCCTGAAAAAACTTTGAA
AAAAGACGCATTAGGGGCAAACCAAATGAATAGTGTTGACGCAATTACTT
ATCAAGTAACAAACGGAAAAAATGCCATGCCAGCTTTTGGTGGTCGCTTA
TCTGAAGATGACATACAAGATGTAGCTAATTATGTTTTATCTCAATCTGA
GAAAGGTTGGGATTAA
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