mRNA_L-elsbetiae_contig10736.685.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10736.685.1
Unique NamemRNA_L-elsbetiae_contig10736.685.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10736.685.1 vs. uniprot
Match: D8LH17_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH17_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 7.740e-13
Identity = 60/109 (55.05%), Postives = 68/109 (62.39%), Query Frame = 1 
Query:    1 RLRYERANQELQEEVKSLNLLKTAAAGFEEAKAKLGLVQSRSAELEKEAAALMKKASGDVDSLDKQLAKSTDKSVEEALLLVSKEAALKEVEAQLTAAQDRAKRAEQEA 327
            R RYE+AN ELQEEV++L+ LK AAAGFE+AK KL                               LA S DKSVEEALLLVSKEAALK+VEAQLTA +DRAK  E+EA
Sbjct:  211 RARYEKANLELQEEVEALSQLKDAAAGFEDAKIKLXXXXXXXXXXXX----XXXXXXXXXXXXXXXLAASVDKSVEEALLLVSKEAALKDVEAQLTAVKDRAKVLEKEA 315
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10736.685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LH17_ECTSI7.740e-1355.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10736contigL-elsbetiae_contig10736:872..3547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size327
Cds size327
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10736.685.1prot_L-elsbetiae_contig10736.685.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10736 872..3547 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815291.5683541-CDS-L-elsbetiae_contig10736:871..9371622815291.5683541-CDS-L-elsbetiae_contig10736:871..937Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10736 872..937 +
1691682820.9022949-CDS-L-elsbetiae_contig10736:871..9371691682820.9022949-CDS-L-elsbetiae_contig10736:871..937Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10736 872..937 +
1622815291.5801942-CDS-L-elsbetiae_contig10736:1586..16971622815291.5801942-CDS-L-elsbetiae_contig10736:1586..1697Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10736 1587..1697 +
1691682820.914968-CDS-L-elsbetiae_contig10736:1586..16971691682820.914968-CDS-L-elsbetiae_contig10736:1586..1697Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10736 1587..1697 +
1622815291.5908473-CDS-L-elsbetiae_contig10736:3397..35471622815291.5908473-CDS-L-elsbetiae_contig10736:3397..3547Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10736 3398..3547 +
1691682820.9283974-CDS-L-elsbetiae_contig10736:3397..35471691682820.9283974-CDS-L-elsbetiae_contig10736:3397..3547Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10736 3398..3547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10736.685.1

>prot_L-elsbetiae_contig10736.685.1 ID=prot_L-elsbetiae_contig10736.685.1|Name=mRNA_L-elsbetiae_contig10736.685.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
RLRYERANQELQEEVKSLNLLKTAAAGFEEAKAKLGLVQSRSAELEKEAA
ALMKKASGDVDSLDKQLAKSTDKSVEEALLLVSKEAALKEVEAQLTAAQD
RAKRAEQEA
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mRNA from alignment at L-elsbetiae_contig10736:872..3547+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10736.685.1 ID=mRNA_L-elsbetiae_contig10736.685.1|Name=mRNA_L-elsbetiae_contig10736.685.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2676bp|location=Sequence derived from alignment at L-elsbetiae_contig10736:872..3547+ (Laminarionema elsbetiae ELsaHSoW15)
AGGCTGAGGTACGAGAGGGCCAACCAGGAATTGCAGGAGGAGGTCAAGTC
GCTTAACCTGCTCAAGGTACATCATGGTACCATTTACGCGTTGGTTCAGG
CTTGTCTCTGCTAGCCACAGCTTGCAGCTTTTCTTGTGTGTGTCCCCCCC
CTCTCTTTCTGTCTCGCTGCAGCCGGCTATTCCCTCAAGCGAGATCTCTA
AACCCATGGTTTGTTACCTCGGGAGGCTATTACATGTACGCTGCTAGACT
AGCTCACGGGAATCGCGAAGGTATGCCACTGGCTGGCTCTCTGGAAAAGC
CAGTTTTGGACTTCTCTTTGTATTTCGGCGCATGCATGCACGCCCGCACG
CACGCACTCGCAGTCGTCTTCCGCAATATTCTTCCTTGTTTAGTCTTGGA
AGCAGTATCGTGTATGATCTTCTATTTTCGTGCTTTGTGGACCCTTCGGG
TCCATTTTATTTCTTTTCATTTTTCAGTAGTCTATACCCTTTTTCAGGGT
TAGTTATCCTGTGACCACGGGAATCGACCGCGTCAGTGTTGGATTAGTAC
GGACTCGTGGAGGTGTACTGGATAGAGAGATCGGAACGGTTTTTAATGTG
GAGACAATACACACACACACACACACACATATATATGCGGGAGTGTTTAT
TTCTCCATTCGTTTTTGTGTGTGTGTGTGTGTGTGTTTTTTTTTGGTTCT
TCTTTTGGCACAAAGACCGCGGCGGCCGGGTTCGAGGAGGCCAAGGCGAA
GCTGGGGCTGGTGCAGTCCAGATCGGCCGAGCTCGAGAAGGAGGCTGCTG
CGCTCATGAAGAAGGCAAGTGGGGACGTGGCGTGAGGGACTAACATCAAA
GGAGACCAGGGGACACAGAGGCAGTAGTTCATGTTATTCCATATTGATAA
GGTCATAACACACACACTCCATCTTGTCATCGGGCCATGACCATCCCCAG
CTGGACTCCCTCGACAGGGTATTGGTGACAATAGCTGTTGTACCCGTTGT
GAATCATGTCATATATGAAAACAAACTCTATCGTGCCATACAATCTCCAT
GTGGAGTCCCTAGACGAAGTTAATAAACAGTGACTTGTGCTCTCATCGTG
TCCCTGGTTAATCATATGCCACAGACTCCACTTGATCATTGTGCAATGTA
TACAATCTTCAGGTGGACTCCCTTGACAAGGTATTGTGACACTGCAATAG
CCACATACGCTCTATTATCCATTGTTAATCATGCCATAACAAACTCCATC
TCTTCATTGTGCCGTAAATTCTCTCAAATAGGTAACCCTCTTTCTGCCAA
GCAGTTGGCGAAGAGTAGATACCGATAAGTCGATACGTATAGTCAATCTT
ATCTAAAGATATTGTCAAAACTCCATTTTAAGATAGTTATGCCATACTAC
AAACATATCTTACAGGCGGCGGTGAGGGGCACACCCATTGATCAGTATCG
GCCTTTCTCGCAAAATAATCGCATACTCCCGCTGAACATCACGGAGCCTC
ACTTGAGTTTGTATAGCTTTCCAAAAACACCCGCATGTTCTGACAGTTCT
GCCAAATAGCAGAGGTGTACCGGGATCGTCGGCTCTTTTTTGCCGTGTTT
GCCGATAAATTTTAAGGCGGCGGTAAGGGGTACCCATTGATCAGTATAGG
CCTTTCTCGAAGAATAATCGCATACCCTCGTTGAACATCACGGAGCCTCA
CTTGAAGTCTGTGTAGGCTTTCCAAAAACGCCCGCATGTTCCGACAGTGC
TGCGAAATAACAGAGGTATTCCGAGATGGTTGGCTTTTCTTTGCCGTGTT
CGCCGAGCGTTTTTTACCCACCCCTTGCGCGTGTGAACTGTGAGGTCCGT
AAAAAAATTATGTGCATACCCTCCTCTATTCCACACTCTTTCGAAACAGC
CGGGCTACACTCGCGTCGAGCCCATTTCTTGATCGAGGGAAAAACCACGG
GGCGGGGCTCCGGGGAGTGGACCCAAGTATTCATTCGATTAACCAAAAAA
AGAGCGGTTGGAAACACCATTCTTGCGCACCATAACACCGAAAGCGTGGC
TTATAGCTACCTGCTGCTGCTACCCAGGACATGCGGCGGCCGCTGCGTAC
CATATCAGTAGACCCTCCCAGCATCTTGCGCTGTTCTTGCCTGTGAGGGG
CGAGCTATCTGATCTCCTGGACACCAGACTTCTTGTGTGACAGTCCTTTG
CAAGCAGTGTTTTTTTGCACCTTTGGAGAGCAAATTTTCCGCCTCCAAGA
CAGCTAGTACAAATTGAGGAGCGGAGGGCCGTCTCTCTGTAGTGGAGAAA
AACAACGCTGCGTTGGAGTGGGTCGAGGAGTCTCGCAGCGGGACGTGAAG
AGCCGAACTGGAATGTGGTGCTTGCGGGGAAAAGGCCCGTGCTTTCAGTT
TTCAGCGTACATACAGTATCAGAGATAATCTGCACTCGAAAAATCAATCA
AATCGTGCTCGTCACCGAGCCCCTGGATCCAAAGTCAAGTCTGTGGATCC
CCTCACCGTCGTCCCCTTCCAAGCAGGTGGACTCTCTCGACAAGCAGCTG
GCGAAGAGTACCGACAAGTCGGTGGAGGAGGCGTTACTCCTGGTGAGCAA
GGAGGCGGCCTTGAAGGAGGTCGAGGCGCAGCTGACGGCAGCGCAGGACC
GGGCCAAGCGTGCGGAGCAAGAAGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10736:872..3547+

>mRNA_L-elsbetiae_contig10736.685.1 ID=mRNA_L-elsbetiae_contig10736.685.1|Name=mRNA_L-elsbetiae_contig10736.685.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig10736:872..3547+ (Laminarionema elsbetiae ELsaHSoW15)
AGGCTGAGGTACGAGAGGGCCAACCAGGAATTGCAGGAGGAGGTCAAGTC
GCTTAACCTGCTCAAGAGGCTGAGGTACGAGAGGGCCAACCAGGAATTGC
AGGAGGAGGTCAAGTCGCTTAACCTGCTCAAGACCGCGGCGGCCGGGTTC
GAGGAGGCCAAGGCGAAGCTGGGGCTGGTGCAGTCCAGATCGGCCGAGCT
CGAGAAGGAGGCTGCTGCGCTCATGAAGAAGGCAAGTGGGGACACCGCGG
CGGCCGGGTTCGAGGAGGCCAAGGCGAAGCTGGGGCTGGTGCAGTCCAGA
TCGGCCGAGCTCGAGAAGGAGGCTGCTGCGCTCATGAAGAAGGCAAGTGG
GGACGTGGACTCTCTCGACAAGCAGCTGGCGAAGAGTACCGACAAGTCGG
TGGAGGAGGCGTTACTCCTGGTGAGCAAGGAGGCGGCCTTGAAGGAGGTC
GAGGCGCAGCTGACGGCAGCGCAGGACCGGGCCAAGCGTGCGGAGCAAGA
AGCCGTGGACTCTCTCGACAAGCAGCTGGCGAAGAGTACCGACAAGTCGG
TGGAGGAGGCGTTACTCCTGGTGAGCAAGGAGGCGGCCTTGAAGGAGGTC
GAGGCGCAGCTGACGGCAGCGCAGGACCGGGCCAAGCGTGCGGAGCAAGA
AGCC
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