mRNA_L-elsbetiae_contig10727.677.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10727.677.1
Unique NamemRNA_L-elsbetiae_contig10727.677.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10727.677.1 vs. uniprot
Match: A0A6H5L8R1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8R1_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 7.650e-15
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:   34 MTNEGRWTDNGQPLTLAEGRTVMPMMDQVEQAIVARLLPSQAAE 165
            M NEGRWTDNGQPLTLAEGRTVMPM+DQ EQAIVARLLPS A +
Sbjct:   55 MANEGRWTDNGQPLTLAEGRTVMPMLDQAEQAIVARLLPSHALD 98
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BLAST of mRNA_L-elsbetiae_contig10727.677.1 vs. uniprot
Match: D7G3W3_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W3_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 2.980e-8
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   34 MTNEGRWTDNGQPLTLAEGRTVMPMMDQVEQAIVARLLPSQA 159
            M N GRWTDNGQPL LAEGRTV+PM+ Q +QA  A LLPS A
Sbjct:  384 MPNGGRWTDNGQPLPLAEGRTVIPMLAQGDQAFFALLLPSHA 425
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10727.677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L8R1_9PHAE7.650e-1586.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3W3_ECTSI2.980e-871.43HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10727contigL-elsbetiae_contig10727:1439..2383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue1.7e-07
Seed eggNOG ortholog2880.D7G3W3
Preferred nameUPL1
KEGG koko:K10592
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0005911,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009506,GO:0009987,GO:0016020,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0030054,GO:0032446,GO:0032991,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0055044,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1902494,GO:1990234
EggNOG free text desc.ubiquitin protein ligase activity
EggNOG OGsCOG5021@1,KOG0939@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons2
Model size466
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815291.0833998-CDS-L-elsbetiae_contig10727:1438..16901622815291.0833998-CDS-L-elsbetiae_contig10727:1438..1690Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10727 1439..1690 +
1691682820.6970906-CDS-L-elsbetiae_contig10727:1438..16901691682820.6970906-CDS-L-elsbetiae_contig10727:1438..1690Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10727 1439..1690 +
1622815291.0929098-CDS-L-elsbetiae_contig10727:2170..23831622815291.0929098-CDS-L-elsbetiae_contig10727:2170..2383Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10727 2171..2383 +
1691682820.715137-CDS-L-elsbetiae_contig10727:2170..23831691682820.715137-CDS-L-elsbetiae_contig10727:2170..2383Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10727 2171..2383 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10727.677.1prot_L-elsbetiae_contig10727.677.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10727 1439..2383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10727.677.1

>prot_L-elsbetiae_contig10727.677.1 ID=prot_L-elsbetiae_contig10727.677.1|Name=mRNA_L-elsbetiae_contig10727.677.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=155bp
VVAAAGGGGGGMTNEGRWTDNGQPLTLAEGRTVMPMMDQVEQAIVARLLP
SQAAEHQAGAGAGAGAAAANPGAGAGAGGGSAGEEEKQSAEGQAAAPSSE
AGAESRSVNAGATAGAADEPVAGAAAAAAAAAAAAVGGSGGGGGSHNADD
LQLLQ
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mRNA from alignment at L-elsbetiae_contig10727:1439..2383+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10727.677.1 ID=mRNA_L-elsbetiae_contig10727.677.1|Name=mRNA_L-elsbetiae_contig10727.677.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=945bp|location=Sequence derived from alignment at L-elsbetiae_contig10727:1439..2383+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGTCGCCGCGGCCGGTGGCGGCGGCGGCGGCATGACCAACGAGGGCCG
GTGGACGGACAACGGGCAGCCGCTCACGCTGGCGGAGGGCAGGACGGTGA
TGCCCATGATGGACCAGGTTGAGCAGGCGATCGTTGCCCGCTTGCTTCCT
TCGCAGGCGGCCGAGCACCAAGCTGGTGCTGGTGCTGGTGCTGGTGCCGC
CGCTGCTAACCCCGGAGCTGGAGCGGGGGCGGGTGGTGGTAGTGCGGGGG
AGGTGAGCAAAAAAGGGGGGGGCGTGGAGGGGAAATGGGCGGGTTGGAGT
GGTTTCGGTGAGGTCGATGCATGCGACGGTCGTTTCGTTGTGGTTTTGGG
TGCGGTTTTGGGTGCGGTTTTGGATGATTTTGTCGAGAGAACCTTCGGTT
AATTGTGCCTGAAGCTGCTGTTTGATTCCATGGTGGTCGCATGTCCGCAC
GCGGCGGGTGATTGGAGTTGCATCCGTTGTTGCATCGGTCGGTCAGACGG
GATGTGCCGATACGTACGTATGTACTGTGAACTTTTGTTTTTAAGCACGT
GTTTTTCTTCCACGGCTTTGGTCTTTCCGAAGCTGGCCCCCTCGTCCCGT
GGTTTTTCATTTATCCACGCCGCGCAACCCCGCTCCAACCCAACAGTCAA
ACAAGTTAAAACAATAAAATTGACGGCTCCACTTCTGCATTTGCATCCCC
GATCCCCGATCCCCGATCCTCTTCTTTGGCAGGAGGAAAAACAGAGCGCA
GAAGGTCAGGCGGCGGCGCCATCTTCCGAGGCCGGCGCCGAGTCGCGCTC
CGTAAACGCCGGCGCCACCGCCGGCGCTGCAGACGAACCCGTAGCAGGAG
CAGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCTGTTGGCGGCAGCGGC
GGTGGTGGTGGCTCTCACAACGCCGACGACTTGCAACTGCTCCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10727:1439..2383+

>mRNA_L-elsbetiae_contig10727.677.1 ID=mRNA_L-elsbetiae_contig10727.677.1|Name=mRNA_L-elsbetiae_contig10727.677.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=930bp|location=Sequence derived from alignment at L-elsbetiae_contig10727:1439..2383+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGTCGCCGCGGCCGGTGGCGGCGGCGGCGGCATGACCAACGAGGGCCG
GTGGACGGACAACGGGCAGCCGCTCACGCTGGCGGAGGGCAGGACGGTGA
TGCCCATGATGGACCAGGTTGAGCAGGCGATCGTTGCCCGCTTGCTTCCT
TCGCAGGCGGCCGAGCACCAAGCTGGTGCTGGTGCTGGTGCTGGTGCCGC
CGCTGCTAACCCCGGAGCTGGAGCGGGGGCGGGTGGTGGTAGTGCGGGGG
AGGTGGTCGCCGCGGCCGGTGGCGGCGGCGGCGGCATGACCAACGAGGGC
CGGTGGACGGACAACGGGCAGCCGCTCACGCTGGCGGAGGGCAGGACGGT
GATGCCCATGATGGACCAGGTTGAGCAGGCGATCGTTGCCCGCTTGCTTC
CTTCGCAGGCGGCCGAGCACCAAGCTGGTGCTGGTGCTGGTGCTGGTGCC
GCCGCTGCTAACCCCGGAGCTGGAGCGGGGGCGGGTGGTGGTAGTGCGGG
GGAGGAGGAAAAACAGAGCGCAGAAGGTCAGGCGGCGGCGCCATCTTCCG
AGGCCGGCGCCGAGTCGCGCTCCGTAAACGCCGGCGCCACCGCCGGCGCT
GCAGACGAACCCGTAGCAGGAGCAGCAGCGGCGGCGGCGGCGGCGGCGGC
GGCGGCTGTTGGCGGCAGCGGCGGTGGTGGTGGCTCTCACAACGCCGACG
ACTTGCAACTGCTCCAGGAGGAAAAACAGAGCGCAGAAGGTCAGGCGGCG
GCGCCATCTTCCGAGGCCGGCGCCGAGTCGCGCTCCGTAAACGCCGGCGC
CACCGCCGGCGCTGCAGACGAACCCGTAGCAGGAGCAGCAGCGGCGGCGG
CGGCGGCGGCGGCGGCGGCTGTTGGCGGCAGCGGCGGTGGTGGTGGCTCT
CACAACGCCGACGACTTGCAACTGCTCCAG
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