mRNA_L-elsbetiae_contig10726.676.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10726.676.1
Unique NamemRNA_L-elsbetiae_contig10726.676.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10726.676.1 vs. uniprot
Match: A0A6H5KZ63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ63_9PHAE)

HSP 1 Score: 251 bits (642), Expect = 2.100e-81
Identity = 124/137 (90.51%), Postives = 130/137 (94.89%), Query Frame = 1
Query:    1 QAPQEPATEKARRANRKAEQPAGCKTVFVKNLPYDVDEAGVNEALSGCGRIVSVRLAAWNHTHKLKGFGYVEFSTERGAETCVRKQEGLSVGGRPLVVDFETGAPKGSFRRQDGAQIKKTSADAGVGKGKAPKFKVH 411
            QAPQEPATEKARRANRKAEQPAGC+TVFVKNLPYDV+E  V+EAL+GCGRI SVRLA WNHT KLKGFGYVEFSTERGAETCVR Q+ LS+GGRPLVVDFETGAPKGSFRRQDGAQIKKTSADAGVGKGKAPKFKVH
Sbjct:  202 QAPQEPATEKARRANRKAEQPAGCRTVFVKNLPYDVEEDAVSEALAGCGRIASVRLAMWNHTRKLKGFGYVEFSTERGAETCVRTQQSLSIGGRPLVVDFETGAPKGSFRRQDGAQIKKTSADAGVGKGKAPKFKVH 338          
BLAST of mRNA_L-elsbetiae_contig10726.676.1 vs. uniprot
Match: D7FP47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP47_ECTSI)

HSP 1 Score: 251 bits (642), Expect = 3.020e-81
Identity = 124/137 (90.51%), Postives = 129/137 (94.16%), Query Frame = 1
Query:    1 QAPQEPATEKARRANRKAEQPAGCKTVFVKNLPYDVDEAGVNEALSGCGRIVSVRLAAWNHTHKLKGFGYVEFSTERGAETCVRKQEGLSVGGRPLVVDFETGAPKGSFRRQDGAQIKKTSADAGVGKGKAPKFKVH 411
            QAPQEPATEKARRANRKAEQP GC+TVFVKNLPYDVDE  V+EAL+GCGRI SVRLA WNHT KLKGFGYVEFSTERGAETCVR Q+ LS+GGRPLVVDFETGAPKGSFRRQDGAQIKKTSADAGVGKGKAPKFKVH
Sbjct:  214 QAPQEPATEKARRANRKAEQPTGCRTVFVKNLPYDVDEDAVSEALAGCGRIASVRLAMWNHTRKLKGFGYVEFSTERGAETCVRTQQNLSIGGRPLVVDFETGAPKGSFRRQDGAQIKKTSADAGVGKGKAPKFKVH 350          
BLAST of mRNA_L-elsbetiae_contig10726.676.1 vs. uniprot
Match: A0A6G0WFD1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WFD1_9STRA)

HSP 1 Score: 124 bits (312), Expect = 3.370e-32
Identity = 60/106 (56.60%), Postives = 75/106 (70.75%), Query Frame = 1
Query:   25 EKARRANRKAEQPAGCKTVFVKNLPYDVDEAGVNEALSGCGRIVSVRLAAWNHTHKLKGFGYVEFSTERGAETCVRKQEGLSVGGRPLVVDFETGAPKGSFRRQDG 342
            ++AR + +  +   GC+TVF+K LPYDVDEA V EALS CG IVSVRL  WNHT KLKGFGYVEF+ E  A    +K  G+ +G R +++D +TGAPK SFR  DG
Sbjct:  160 DQARSSRKNVKITKGCRTVFIKQLPYDVDEATVKEALSSCGDIVSVRLPLWNHTKKLKGFGYVEFADEASAVEATKKS-GMKIGSRMVLIDLDTGAPKASFRNTDG 264          
BLAST of mRNA_L-elsbetiae_contig10726.676.1 vs. uniprot
Match: A0A836CEI7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEI7_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.960e-30
Identity = 56/104 (53.85%), Postives = 73/104 (70.19%), Query Frame = 1
Query:   52 AEQPAGCKTVFVKNLPYDVDEAGVNEALSGCGRIVSVRLAAWNHTHKLKGFGYVEFSTERGAETCVRKQEGLSVGGRPLVVDFETGAPKGSFRRQDGAQIKKTS 363
            A +P GC+TVFVKNLPYD DE  V +A S CG +  VRLA WN+T + KGFGYV+F+ E GA+  V +Q  + V GRP++VD+E G  KGSFR  DG + +K +
Sbjct:  320 APRPKGCRTVFVKNLPYDADEQMVTKAFSKCGEVAIVRLAIWNNTKQRKGFGYVDFADETGAQAAVERQANIKVAGRPVLVDYEVGRVKGSFRLADGQKYEKVA 423          
BLAST of mRNA_L-elsbetiae_contig10726.676.1 vs. uniprot
Match: W7TYE4_9STRA (31 kDa chloroplastic n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYE4_9STRA)

HSP 1 Score: 119 bits (299), Expect = 2.570e-30
Identity = 56/101 (55.45%), Postives = 69/101 (68.32%), Query Frame = 1
Query:   55 EQPAGCKTVFVKNLPYDVDEAGVNEALSGCGRIVSVRLAAWNHTHKLKGFGYVEFSTERGAETCVRKQEGLSVGGRPLVVDFETGAPKGSFRRQDGAQIKK 357
            ++P GC TVFVKNLPY+  E  V EA + CG+I +VRLA W HT + KGF YV+F  E  AE  V+KQ  + VGGR + VD+ETGAPK S+R  DG Q  K
Sbjct:  188 DKPPGCDTVFVKNLPYNTTEDAVREAFTFCGKIKTVRLAVWQHTQQQKGFCYVQFEKENAAEIAVKKQGAIQVGGRKVFVDYETGAPKASYRAPDGRQWSK 288          
BLAST of mRNA_L-elsbetiae_contig10726.676.1 vs. uniprot
Match: K3WSU1_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSU1_GLOUD)

HSP 1 Score: 117 bits (294), Expect = 4.730e-29
Identity = 57/99 (57.58%), Postives = 71/99 (71.72%), Query Frame = 1
Query:   67 GCKTVFVKNLPYDVDEAGVNEALSGCGRIVSVRLAAWNHTHKLKGFGYVEFSTERGAETCVRKQEGLSVGGRPLVVDFET-GAPKGSFRRQDGAQIKKT 360
            GCKTVFVK LPYD++E  + +AL+ CG I+SVRL  WNHT KLKGFGYVEFS E  A   V K+ G+ VGGR ++++ +  GAPK SFR+ DG    KT
Sbjct:  236 GCKTVFVKQLPYDIEEQALRDALASCGTIMSVRLPIWNHTKKLKGFGYVEFSKEEEAVAAV-KRSGMKVGGRMVIINLDVAGAPKASFRQTDGQYWNKT 333          
BLAST of mRNA_L-elsbetiae_contig10726.676.1 vs. uniprot
Match: A0A2D4BXX0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXX0_PYTIN)

HSP 1 Score: 115 bits (289), Expect = 3.280e-28
Identity = 56/94 (59.57%), Postives = 70/94 (74.47%), Query Frame = 1
Query:   67 GCKTVFVKNLPYDVDEAGVNEALSGCGRIVSVRLAAWNHTHKLKGFGYVEFSTERGAETCVRKQEGLSVGGRPLVVDFETG--APKGSFRRQDG 342
            GC+TVF+K+LPYDV+EA V EAL+ CG I+SVRL  WNHT KLKGFGYVEFS+E  A   V K+ G+ +G R +++  ET   APK SFR +DG
Sbjct:  246 GCRTVFIKHLPYDVEEAAVREALASCGTILSVRLPLWNHTKKLKGFGYVEFSSEDEAIAAV-KRSGMKIGDRMVIISLETAGSAPKASFRLRDG 338          
BLAST of mRNA_L-elsbetiae_contig10726.676.1 vs. uniprot
Match: A0A024UKP4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UKP4_9STRA)

HSP 1 Score: 113 bits (283), Expect = 6.750e-28
Identity = 51/92 (55.43%), Postives = 64/92 (69.57%), Query Frame = 1
Query:   67 GCKTVFVKNLPYDVDEAGVNEALSGCGRIVSVRLAAWNHTHKLKGFGYVEFSTERGAETCVRKQEGLSVGGRPLVVDFETGAPKGSFRRQDG 342
            GC+TV++K LPYD+DE  V  AL  CG I SVRL  W HT KLKGFGYVEFS E  A     K+ G+ +G R +++D +TGAPK SFR+ +G
Sbjct:  168 GCRTVYIKQLPYDIDEETVKSALESCGAIASVRLPMWGHTKKLKGFGYVEFSDEASAAKAA-KRSGMKIGNRMVLIDLDTGAPKASFRQTNG 258          
BLAST of mRNA_L-elsbetiae_contig10726.676.1 vs. uniprot
Match: A0A8K1CG62_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CG62_PYTOL)

HSP 1 Score: 114 bits (284), Expect = 1.320e-27
Identity = 55/94 (58.51%), Postives = 68/94 (72.34%), Query Frame = 1
Query:   67 GCKTVFVKNLPYDVDEAGVNEALSGCGRIVSVRLAAWNHTHKLKGFGYVEFSTERGAETCVRKQEGLSVGGRPLVVDFETG--APKGSFRRQDG 342
            GC+TVF+K+LPYDV+E+ + EALS CG + SVRL  WNHT KLKGFGYVEFSTE  A   V K+ G+ +G R +++  ET   APK SFR  DG
Sbjct:  232 GCRTVFIKHLPYDVEESTIKEALSTCGTVQSVRLPLWNHTKKLKGFGYVEFSTEDEAVAAV-KRSGMKIGDRMVIISLETATSAPKASFRLSDG 324          
BLAST of mRNA_L-elsbetiae_contig10726.676.1 vs. uniprot
Match: A0A485L4I6_9STRA (Aste57867_15645 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L4I6_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.360e-27
Identity = 50/92 (54.35%), Postives = 68/92 (73.91%), Query Frame = 1
Query:   67 GCKTVFVKNLPYDVDEAGVNEALSGCGRIVSVRLAAWNHTHKLKGFGYVEFSTERGAETCVRKQEGLSVGGRPLVVDFETGAPKGSFRRQDG 342
            GC+TV++K LPY+V+E  V +AL+ CG I+SVRL  W HT KLKGFGYVEF+ E GA     K+ G+ +G R +++D +TGAPK SFR+ +G
Sbjct:  173 GCRTVYIKQLPYEVEEDTVKQALASCGEILSVRLPMWGHTKKLKGFGYVEFADEAGAVKAT-KRSGMKIGDRMVLIDLDTGAPKASFRQTNG 263          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10726.676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZ63_9PHAE2.100e-8190.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FP47_ECTSI3.020e-8190.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6G0WFD1_9STRA3.370e-3256.60Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A836CEI7_9STRA1.960e-3053.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TYE4_9STRA2.570e-3055.4531 kDa chloroplastic n=2 Tax=Monodopsidaceae TaxID... [more]
K3WSU1_GLOUD4.730e-2957.58Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2D4BXX0_PYTIN3.280e-2859.57Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A024UKP4_9STRA6.750e-2855.43Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A8K1CG62_PYTOL1.320e-2758.51Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A485L4I6_9STRA1.360e-2754.35Aste57867_15645 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10726contigL-elsbetiae_contig10726:5447..6579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score253.4
Seed ortholog evalue5.9e-65
Seed eggNOG ortholog2880.D7FP47
KEGG koko:K11294
KEGG Pathwayko05130,map05130
Hectar predicted targeting categoryother localisation
EggNOG free text desc.rRNA processing
EggNOG OGsKOG4210@1,KOG4210@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03036
Ec32 ortholog descriptionNucleotide-binding alpha-beta plait domain
Ec32 orthologEc-10_002460.1
Exons2
Model size417
Cds size417
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815291.0443347-CDS-L-elsbetiae_contig10726:5446..56651622815291.0443347-CDS-L-elsbetiae_contig10726:5446..5665Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10726 5447..5665 -
1691682820.6719832-CDS-L-elsbetiae_contig10726:5446..56651691682820.6719832-CDS-L-elsbetiae_contig10726:5446..5665Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10726 5447..5665 -
1622815291.0541928-CDS-L-elsbetiae_contig10726:6381..65791622815291.0541928-CDS-L-elsbetiae_contig10726:6381..6579Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10726 6382..6579 -
1691682820.6854753-CDS-L-elsbetiae_contig10726:6381..65791691682820.6854753-CDS-L-elsbetiae_contig10726:6381..6579Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10726 6382..6579 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10726.676.1prot_L-elsbetiae_contig10726.676.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10726 5447..6579 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10726.676.1

>prot_L-elsbetiae_contig10726.676.1 ID=prot_L-elsbetiae_contig10726.676.1|Name=mRNA_L-elsbetiae_contig10726.676.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp
QAPQEPATEKARRANRKAEQPAGCKTVFVKNLPYDVDEAGVNEALSGCGR
IVSVRLAAWNHTHKLKGFGYVEFSTERGAETCVRKQEGLSVGGRPLVVDF
ETGAPKGSFRRQDGAQIKKTSADAGVGKGKAPKFKVHA*
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mRNA from alignment at L-elsbetiae_contig10726:5447..6579-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10726.676.1 ID=mRNA_L-elsbetiae_contig10726.676.1|Name=mRNA_L-elsbetiae_contig10726.676.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1133bp|location=Sequence derived from alignment at L-elsbetiae_contig10726:5447..6579- (Laminarionema elsbetiae ELsaHSoW15)
CAGGCGCCGCAAGAGCCCGCGACAGAGAAGGCGAGGCGAGCGAACCGAAA GGCGGAGCAGCCGGCGGGGTGCAAGACGGTGTTCGTCAAGAACCTGCCGT ACGACGTGGACGAGGCCGGGGTGAACGAGGCCCTCTCCGGATGCGGCCGC ATAGTCTCCGTGCGGCTGGCGGCGTGGAACCATACTCACAAGCTCAAGGT GGGGAAGAGGGAGAGGGAGGAGAGGATGGAAAGGGAACTTTTTTTTTAAT GAATGTTCTCGTATACAAATGCGAGCAGTCTACGTCCGGTCTGTGAACAT ATCGTTCCAGGGGGATCTGTTCTTTTATTAATGCATAGGGATCTGTTTTT TGTGTTTTATTTTATTTTAATTAGTGTATGTACAAATGTCAGTAGTCTAC AATACGTCCAGTGTGTGAAAAATCGTTCCGGGGGGACTACTACTGTTGTA GGCGTACTACCCCCCCCCCCCCCTTCTCCGTCCAAGGTATATACTCTATT TCGCTGTTTTGTGTGTTAGTGTTTGCGTCGTCGGTGCAACAACAAACGTG AATGAAATTGATTTTGTGGTTGGACCGGCCTTGCAGTGCCGCATCGAGCT CGCAAGGTTTGGGTAAACAGAGGTATTTTGAGTTGTTCATGCATACTGCT TGCTGTACATGCAACGCCGCATGTGGCCTGCGCTGTCCCCAGCTCTAACT CAGCGTACCCCCGAACCAATACCCCACTTCGTTCGACGTTCTCAACACCG TCCCCCCGTCTGTCTGTCTGCCCATCCTCCTCTCTCGGCTGCGTTTCCCA ACACTGCGTCCGGCAACGACCACTGCTGCCGCCGCCACTACTACCCCCAC CATCACCACTACCATCGACAAAACCAACACCAACACCAACCACCACCACG AAAAACCACACAAGGGGTTCGGGTACGTGGAGTTTTCTACCGAGAGGGGG GCGGAGACCTGCGTCCGGAAGCAGGAGGGCCTGTCCGTCGGGGGTCGGCC GCTCGTGGTGGACTTCGAGACCGGCGCCCCCAAGGGGTCCTTCCGCCGCC AGGACGGCGCGCAGATCAAGAAGACGTCGGCGGACGCGGGGGTAGGAAAG GGCAAGGCTCCGAAGTTTAAGGTCCATGCCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10726:5447..6579-

>mRNA_L-elsbetiae_contig10726.676.1 ID=mRNA_L-elsbetiae_contig10726.676.1|Name=mRNA_L-elsbetiae_contig10726.676.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=834bp|location=Sequence derived from alignment at L-elsbetiae_contig10726:5447..6579- (Laminarionema elsbetiae ELsaHSoW15)
CAGGCGCCGCAAGAGCCCGCGACAGAGAAGGCGAGGCGAGCGAACCGAAA
GGCGGAGCAGCCGGCGGGGTGCAAGACGGTGTTCGTCAAGAACCTGCCGT
ACGACGTGGACGAGGCCGGGGTGAACGAGGCCCTCTCCGGATGCGGCCGC
ATAGTCTCCGTGCGGCTGGCGGCGTGGAACCATACTCACAAGCTCAAGCA
GGCGCCGCAAGAGCCCGCGACAGAGAAGGCGAGGCGAGCGAACCGAAAGG
CGGAGCAGCCGGCGGGGTGCAAGACGGTGTTCGTCAAGAACCTGCCGTAC
GACGTGGACGAGGCCGGGGTGAACGAGGCCCTCTCCGGATGCGGCCGCAT
AGTCTCCGTGCGGCTGGCGGCGTGGAACCATACTCACAAGCTCAAGGGGT
TCGGGTACGTGGAGTTTTCTACCGAGAGGGGGGCGGAGACCTGCGTCCGG
AAGCAGGAGGGCCTGTCCGTCGGGGGTCGGCCGCTCGTGGTGGACTTCGA
GACCGGCGCCCCCAAGGGGTCCTTCCGCCGCCAGGACGGCGCGCAGATCA
AGAAGACGTCGGCGGACGCGGGGGTAGGAAAGGGCAAGGCTCCGAAGTTT
AAGGTCCATGCCTGAGGGTTCGGGTACGTGGAGTTTTCTACCGAGAGGGG
GGCGGAGACCTGCGTCCGGAAGCAGGAGGGCCTGTCCGTCGGGGGTCGGC
CGCTCGTGGTGGACTTCGAGACCGGCGCCCCCAAGGGGTCCTTCCGCCGC
CAGGACGGCGCGCAGATCAAGAAGACGTCGGCGGACGCGGGGGTAGGAAA
GGGCAAGGCTCCGAAGTTTAAGGTCCATGCCTGA
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