prot_L-elsbetiae_contig10726.676.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig10726.676.1
Unique Name	prot_L-elsbetiae_contig10726.676.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	139

Homology

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BLAST of mRNA_L-elsbetiae_contig10726.676.1 vs. uniprot
Match: A0A6H5KZ63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ63_9PHAE)

HSP 1 Score: 251 bits (642), Expect = 2.100e-81
Identity = 124/137 (90.51%), Postives = 130/137 (94.89%), Query Frame = 0

Query:    1 QAPQEPATEKARRANRKAEQPAGCKTVFVKNLPYDVDEAGVNEALSGCGRIVSVRLAAWNHTHKLKGFGYVEFSTERGAETCVRKQEGLSVGGRPLVVDFETGAPKGSFRRQDGAQIKKTSADAGVGKGKAPKFKVH 137
            QAPQEPATEKARRANRKAEQPAGC+TVFVKNLPYDV+E  V+EAL+GCGRI SVRLA WNHT KLKGFGYVEFSTERGAETCVR Q+ LS+GGRPLVVDFETGAPKGSFRRQDGAQIKKTSADAGVGKGKAPKFKVH
Sbjct:  202 QAPQEPATEKARRANRKAEQPAGCRTVFVKNLPYDVEEDAVSEALAGCGRIASVRLAMWNHTRKLKGFGYVEFSTERGAETCVRTQQSLSIGGRPLVVDFETGAPKGSFRRQDGAQIKKTSADAGVGKGKAPKFKVH 338

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BLAST of mRNA_L-elsbetiae_contig10726.676.1 vs. uniprot
Match: D7FP47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP47_ECTSI)

HSP 1 Score: 251 bits (642), Expect = 3.020e-81
Identity = 124/137 (90.51%), Postives = 129/137 (94.16%), Query Frame = 0

Query:    1 QAPQEPATEKARRANRKAEQPAGCKTVFVKNLPYDVDEAGVNEALSGCGRIVSVRLAAWNHTHKLKGFGYVEFSTERGAETCVRKQEGLSVGGRPLVVDFETGAPKGSFRRQDGAQIKKTSADAGVGKGKAPKFKVH 137
            QAPQEPATEKARRANRKAEQP GC+TVFVKNLPYDVDE  V+EAL+GCGRI SVRLA WNHT KLKGFGYVEFSTERGAETCVR Q+ LS+GGRPLVVDFETGAPKGSFRRQDGAQIKKTSADAGVGKGKAPKFKVH
Sbjct:  214 QAPQEPATEKARRANRKAEQPTGCRTVFVKNLPYDVDEDAVSEALAGCGRIASVRLAMWNHTRKLKGFGYVEFSTERGAETCVRTQQNLSIGGRPLVVDFETGAPKGSFRRQDGAQIKKTSADAGVGKGKAPKFKVH 350

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BLAST of mRNA_L-elsbetiae_contig10726.676.1 vs. uniprot
Match: A0A6G0WFD1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WFD1_9STRA)

HSP 1 Score: 124 bits (312), Expect = 3.370e-32
Identity = 60/106 (56.60%), Postives = 75/106 (70.75%), Query Frame = 0

Query:    9 EKARRANRKAEQPAGCKTVFVKNLPYDVDEAGVNEALSGCGRIVSVRLAAWNHTHKLKGFGYVEFSTERGAETCVRKQEGLSVGGRPLVVDFETGAPKGSFRRQDG 114
            ++AR + +  +   GC+TVF+K LPYDVDEA V EALS CG IVSVRL  WNHT KLKGFGYVEF+ E  A    +K  G+ +G R +++D +TGAPK SFR  DG
Sbjct:  160 DQARSSRKNVKITKGCRTVFIKQLPYDVDEATVKEALSSCGDIVSVRLPLWNHTKKLKGFGYVEFADEASAVEATKKS-GMKIGSRMVLIDLDTGAPKASFRNTDG 264

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BLAST of mRNA_L-elsbetiae_contig10726.676.1 vs. uniprot
Match: A0A836CEI7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEI7_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.960e-30
Identity = 56/104 (53.85%), Postives = 73/104 (70.19%), Query Frame = 0

Query:   18 AEQPAGCKTVFVKNLPYDVDEAGVNEALSGCGRIVSVRLAAWNHTHKLKGFGYVEFSTERGAETCVRKQEGLSVGGRPLVVDFETGAPKGSFRRQDGAQIKKTS 121
            A +P GC+TVFVKNLPYD DE  V +A S CG +  VRLA WN+T + KGFGYV+F+ E GA+  V +Q  + V GRP++VD+E G  KGSFR  DG + +K +
Sbjct:  320 APRPKGCRTVFVKNLPYDADEQMVTKAFSKCGEVAIVRLAIWNNTKQRKGFGYVDFADETGAQAAVERQANIKVAGRPVLVDYEVGRVKGSFRLADGQKYEKVA 423

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BLAST of mRNA_L-elsbetiae_contig10726.676.1 vs. uniprot
Match: W7TYE4_9STRA (31 kDa chloroplastic n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYE4_9STRA)

HSP 1 Score: 119 bits (299), Expect = 2.570e-30
Identity = 56/101 (55.45%), Postives = 69/101 (68.32%), Query Frame = 0

Query:   19 EQPAGCKTVFVKNLPYDVDEAGVNEALSGCGRIVSVRLAAWNHTHKLKGFGYVEFSTERGAETCVRKQEGLSVGGRPLVVDFETGAPKGSFRRQDGAQIKK 119
            ++P GC TVFVKNLPY+  E  V EA + CG+I +VRLA W HT + KGF YV+F  E  AE  V+KQ  + VGGR + VD+ETGAPK S+R  DG Q  K
Sbjct:  188 DKPPGCDTVFVKNLPYNTTEDAVREAFTFCGKIKTVRLAVWQHTQQQKGFCYVQFEKENAAEIAVKKQGAIQVGGRKVFVDYETGAPKASYRAPDGRQWSK 288

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BLAST of mRNA_L-elsbetiae_contig10726.676.1 vs. uniprot
Match: K3WSU1_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSU1_GLOUD)

HSP 1 Score: 117 bits (294), Expect = 4.730e-29
Identity = 57/99 (57.58%), Postives = 71/99 (71.72%), Query Frame = 0

Query:   23 GCKTVFVKNLPYDVDEAGVNEALSGCGRIVSVRLAAWNHTHKLKGFGYVEFSTERGAETCVRKQEGLSVGGRPLVVDFET-GAPKGSFRRQDGAQIKKT 120
            GCKTVFVK LPYD++E  + +AL+ CG I+SVRL  WNHT KLKGFGYVEFS E  A   V K+ G+ VGGR ++++ +  GAPK SFR+ DG    KT
Sbjct:  236 GCKTVFVKQLPYDIEEQALRDALASCGTIMSVRLPIWNHTKKLKGFGYVEFSKEEEAVAAV-KRSGMKVGGRMVIINLDVAGAPKASFRQTDGQYWNKT 333

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BLAST of mRNA_L-elsbetiae_contig10726.676.1 vs. uniprot
Match: A0A2D4BXX0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXX0_PYTIN)

HSP 1 Score: 115 bits (289), Expect = 3.280e-28
Identity = 56/94 (59.57%), Postives = 70/94 (74.47%), Query Frame = 0

Query:   23 GCKTVFVKNLPYDVDEAGVNEALSGCGRIVSVRLAAWNHTHKLKGFGYVEFSTERGAETCVRKQEGLSVGGRPLVVDFETG--APKGSFRRQDG 114
            GC+TVF+K+LPYDV+EA V EAL+ CG I+SVRL  WNHT KLKGFGYVEFS+E  A   V K+ G+ +G R +++  ET   APK SFR +DG
Sbjct:  246 GCRTVFIKHLPYDVEEAAVREALASCGTILSVRLPLWNHTKKLKGFGYVEFSSEDEAIAAV-KRSGMKIGDRMVIISLETAGSAPKASFRLRDG 338

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BLAST of mRNA_L-elsbetiae_contig10726.676.1 vs. uniprot
Match: A0A024UKP4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UKP4_9STRA)

HSP 1 Score: 113 bits (283), Expect = 6.750e-28
Identity = 51/92 (55.43%), Postives = 64/92 (69.57%), Query Frame = 0

Query:   23 GCKTVFVKNLPYDVDEAGVNEALSGCGRIVSVRLAAWNHTHKLKGFGYVEFSTERGAETCVRKQEGLSVGGRPLVVDFETGAPKGSFRRQDG 114
            GC+TV++K LPYD+DE  V  AL  CG I SVRL  W HT KLKGFGYVEFS E  A     K+ G+ +G R +++D +TGAPK SFR+ +G
Sbjct:  168 GCRTVYIKQLPYDIDEETVKSALESCGAIASVRLPMWGHTKKLKGFGYVEFSDEASAAKAA-KRSGMKIGNRMVLIDLDTGAPKASFRQTNG 258

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BLAST of mRNA_L-elsbetiae_contig10726.676.1 vs. uniprot
Match: A0A8K1CG62_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CG62_PYTOL)

HSP 1 Score: 114 bits (284), Expect = 1.320e-27
Identity = 55/94 (58.51%), Postives = 68/94 (72.34%), Query Frame = 0

Query:   23 GCKTVFVKNLPYDVDEAGVNEALSGCGRIVSVRLAAWNHTHKLKGFGYVEFSTERGAETCVRKQEGLSVGGRPLVVDFETG--APKGSFRRQDG 114
            GC+TVF+K+LPYDV+E+ + EALS CG + SVRL  WNHT KLKGFGYVEFSTE  A   V K+ G+ +G R +++  ET   APK SFR  DG
Sbjct:  232 GCRTVFIKHLPYDVEESTIKEALSTCGTVQSVRLPLWNHTKKLKGFGYVEFSTEDEAVAAV-KRSGMKIGDRMVIISLETATSAPKASFRLSDG 324

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BLAST of mRNA_L-elsbetiae_contig10726.676.1 vs. uniprot
Match: A0A485L4I6_9STRA (Aste57867_15645 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L4I6_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.360e-27
Identity = 50/92 (54.35%), Postives = 68/92 (73.91%), Query Frame = 0

Query:   23 GCKTVFVKNLPYDVDEAGVNEALSGCGRIVSVRLAAWNHTHKLKGFGYVEFSTERGAETCVRKQEGLSVGGRPLVVDFETGAPKGSFRRQDG 114
            GC+TV++K LPY+V+E  V +AL+ CG I+SVRL  W HT KLKGFGYVEF+ E GA     K+ G+ +G R +++D +TGAPK SFR+ +G
Sbjct:  173 GCRTVYIKQLPYEVEEDTVKQALASCGEILSVRLPMWGHTKKLKGFGYVEFADEAGAVKAT-KRSGMKIGDRMVLIDLDTGAPKASFRQTNG 263

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig10726.676.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig10726.676.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KZ63_9PHAE	2.100e-81	90.51	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FP47_ECTSI	3.020e-81	90.51	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6G0WFD1_9STRA	3.370e-32	56.60	Uncharacterized protein n=1 Tax=Aphanomyces euteic...	[more]
A0A836CEI7_9STRA	1.960e-30	53.85	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
W7TYE4_9STRA	2.570e-30	55.45	31 kDa chloroplastic n=2 Tax=Monodopsidaceae TaxID...	[more]
K3WSU1_GLOUD	4.730e-29	57.58	Uncharacterized protein n=1 Tax=Globisporangium ul...	[more]
A0A2D4BXX0_PYTIN	3.280e-28	59.57	Uncharacterized protein n=1 Tax=Pythium insidiosum...	[more]
A0A024UKP4_9STRA	6.750e-28	55.43	Uncharacterized protein n=1 Tax=Aphanomyces invada...	[more]
A0A8K1CG62_PYTOL	1.320e-27	58.51	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
A0A485L4I6_9STRA	1.360e-27	54.35	Aste57867_15645 protein n=1 Tax=Aphanomyces stella...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 26..99 e-value: 2.5E-17 score: 73.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 27..96 e-value: 9.6E-16 score: 57.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 25..103 score: 14.863
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..119 e-value: 5.4E-23 score: 83.4
None	No IPR available	PANTHER	PTHR23236:SF9	IP09423P	coord: 10..120
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 10..120
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 19..114

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig10726	contig	L-elsbetiae_contig10726:5447..6579 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig10726.676.1	mRNA_L-elsbetiae_contig10726.676.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig10726 5447..6579 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig10726.676.1 ID=prot_L-elsbetiae_contig10726.676.1|Name=mRNA_L-elsbetiae_contig10726.676.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp
QAPQEPATEKARRANRKAEQPAGCKTVFVKNLPYDVDEAGVNEALSGCGR
IVSVRLAAWNHTHKLKGFGYVEFSTERGAETCVRKQEGLSVGGRPLVVDF
ETGAPKGSFRRQDGAQIKKTSADAGVGKGKAPKFKVHA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf