mRNA_L-elsbetiae_contig2116.6447.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2116.6447.1
Unique NamemRNA_L-elsbetiae_contig2116.6447.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig2116.6447.1 vs. uniprot
Match: D7FUI7_ECTSI (Sept3, septin GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUI7_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 1.630e-5
Identity = 32/65 (49.23%), Postives = 35/65 (53.85%), Query Frame = 1 
Query:    1 MPPNTSCDPASGAGAVPCELPDTKGRR-----GSLTSSRVPGDPSPQKLPDQLRVMVAGESGLGK 180
            MPPNT+       G  PC      G       G+  S RVPG P  +  PDQLRVMVAGESGLGK
Sbjct:    1 MPPNTT------VGTDPCMASPVVGDPQAKDGGNAPSVRVPGPPQQRPTPDQLRVMVAGESGLGK 59
[Close]
BLAST of mRNA_L-elsbetiae_contig2116.6447.1 vs. uniprot
Match: A0A6H5JBY2_9PHAE (Septin-type G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBY2_9PHAE)

HSP 1 Score: 48.1 bits (113), Expect = 7.820e-5
Identity = 30/61 (49.18%), Postives = 34/61 (55.74%), Query Frame = 1 
Query:    1 MPPNTSCDPASGAGAVPCELPDTKGRRGSLTSSRVPGDPSPQKLPDQLRVMVAGESGLGKA 183
            MPP+T+    SG G+                S RVPG P   + PDQLRVMVAGESGLGKA
Sbjct:    1 MPPSTAMASDSGMGSPVVGA-----------SVRVPGPPQQSQAPDQLRVMVAGESGLGKA 50
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2116.6447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FUI7_ECTSI1.630e-549.23Sept3, septin GTPase n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5JBY2_9PHAE7.820e-549.18Septin-type G domain-containing protein n=1 Tax=Ec... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2116contigL-elsbetiae_contig2116:13632..13814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size184
Cds size183
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815867.3616483-CDS-L-elsbetiae_contig2116:13631..138141622815867.3616483-CDS-L-elsbetiae_contig2116:13631..13814Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2116 13632..13814 -
1691683155.9785776-CDS-L-elsbetiae_contig2116:13631..138141691683155.9785776-CDS-L-elsbetiae_contig2116:13631..13814Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2116 13632..13814 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2116.6447.1prot_L-elsbetiae_contig2116.6447.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2116 13632..13814 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2116.6447.1

>prot_L-elsbetiae_contig2116.6447.1 ID=prot_L-elsbetiae_contig2116.6447.1|Name=mRNA_L-elsbetiae_contig2116.6447.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=61bp
MPPNTSCDPASGAGAVPCELPDTKGRRGSLTSSRVPGDPSPQKLPDQLRV
MVAGESGLGKA
back to top

mRNA from alignment at L-elsbetiae_contig2116:13632..13814-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2116.6447.1 ID=mRNA_L-elsbetiae_contig2116.6447.1|Name=mRNA_L-elsbetiae_contig2116.6447.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=183bp|location=Sequence derived from alignment at L-elsbetiae_contig2116:13632..13814- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCCCTAATACCAGCTGTGATCCCGCCTCCGGCGCGGGCGCCGTCCC
GTGTGAGCTCCCGGACACCAAGGGGCGACGGGGAAGTCTTACGAGTTCGC
GGGTGCCAGGAGACCCATCGCCGCAGAAGCTACCAGACCAGCTGCGAGTA
ATGGTCGCAGGCGAGAGCGGGCTTGGGAAGGCG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig2116:13632..13814-

>mRNA_L-elsbetiae_contig2116.6447.1 ID=mRNA_L-elsbetiae_contig2116.6447.1|Name=mRNA_L-elsbetiae_contig2116.6447.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=366bp|location=Sequence derived from alignment at L-elsbetiae_contig2116:13632..13814- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCCCTAATACCAGCTGTGATCCCGCCTCCGGCGCGGGCGCCGTCCC
GTGTGAGCTCCCGGACACCAAGGGGCGACGGGGAAGTCTTACGAGTTCGC
GGGTGCCAGGAGACCCATCGCCGCAGAAGCTACCAGACCAGCTGCGAGTA
ATGGTCGCAGGCGAGAGCGGGCTTGGGAAGGCGATGCCCCCTAATACCAG
CTGTGATCCCGCCTCCGGCGCGGGCGCCGTCCCGTGTGAGCTCCCGGACA
CCAAGGGGCGACGGGGAAGTCTTACGAGTTCGCGGGTGCCAGGAGACCCA
TCGCCGCAGAAGCTACCAGACCAGCTGCGAGTAATGGTCGCAGGCGAGAG
CGGGCTTGGGAAGGCG
back to top