mRNA_L-elsbetiae_contig2112.6432.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2112.6432.1
Unique NamemRNA_L-elsbetiae_contig2112.6432.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2112.6432.1 vs. uniprot
Match: D7FH78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH78_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 8.240e-10
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:  148 LAQFVPDKQFLFFAPVCRSWRAAWGHRPALTSHVSPDSSLS 270
            LAQFVPD QFLFFAPV + WRAAW  RP +T+HV+PD++ S
Sbjct:  119 LAQFVPDNQFLFFAPVAKGWRAAW-QRPTITAHVTPDTTTS 158
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BLAST of mRNA_L-elsbetiae_contig2112.6432.1 vs. uniprot
Match: A0A6H5KPZ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ6_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 2.190e-9
Identity = 28/42 (66.67%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:  145 SLAQFVPDKQFLFFAPVCRSWRAAWGHRPALTSHVSPDSSLS 270
            S+ +FV +KQFLFFAPV R+WR AWG RPA+TS V+ DSS+S
Sbjct:   66 SIVRFVAEKQFLFFAPVSRAWREAWGCRPAVTSWVTEDSSVS 107
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BLAST of mRNA_L-elsbetiae_contig2112.6432.1 vs. uniprot
Match: D8LGC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGC4_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 2.020e-8
Identity = 25/41 (60.98%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:  148 LAQFVPDKQFLFFAPVCRSWRAAWGHRPALTSHVSPDSSLS 270
            +A+FV DKQ+LFFAPV + WR+AWG RP +TS+ +P +SLS
Sbjct:    1 MAEFVGDKQYLFFAPVSQDWRSAWGGRPTVTSYATPYTSLS 41
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BLAST of mRNA_L-elsbetiae_contig2112.6432.1 vs. uniprot
Match: D7FH49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH49_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 4.530e-7
Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:  148 LAQFVPDKQFLFFAPVCRSWRAAWGHRPALTSHVSP 255
            LAQFV DKQFLFFA V RSWR AWG R  +TS V+P
Sbjct:   29 LAQFVLDKQFLFFAAVSRSWRDAWGERATVTSWVTP 64
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BLAST of mRNA_L-elsbetiae_contig2112.6432.1 vs. uniprot
Match: D7FH77_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH77_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 2.630e-6
Identity = 22/37 (59.46%), Postives = 25/37 (67.57%), Query Frame = 1 
Query:  148 LAQFVPDKQFLFFAPVCRSWRAAWGHRPALTSHVSPD 258
            L  FV D+ FLFF PVCR WRAAWG+RP  T   + D
Sbjct:   19 LISFVADESFLFFGPVCRDWRAAWGNRPTTTRIATSD 55
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BLAST of mRNA_L-elsbetiae_contig2112.6432.1 vs. uniprot
Match: A0A6H5L0J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 4.810e-5
Identity = 20/41 (48.78%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:  145 SLAQFVPDKQFLFFAPVCRSWRAAWGHRPALTSHVSPDSSL 267
            ++A+FV D Q+LFFA V R WR  WG RP +T  ++ D+S+
Sbjct:   12 TVAEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSV 52
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2112.6432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FH78_ECTSI8.240e-1068.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPZ6_9PHAE2.190e-966.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LGC4_ECTSI2.020e-860.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FH49_ECTSI4.530e-772.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FH77_ECTSI2.630e-659.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L0J7_9PHAE4.810e-548.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2112contigL-elsbetiae_contig2112:15244..15513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-13_004320.1
Exons1
Model size271
Cds size243
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815866.3529289-UTR-L-elsbetiae_contig2112:15243..152701622815866.3529289-UTR-L-elsbetiae_contig2112:15243..15270Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2112 15244..15270 +
1691683155.3774507-UTR-L-elsbetiae_contig2112:15243..152701691683155.3774507-UTR-L-elsbetiae_contig2112:15243..15270Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2112 15244..15270 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815866.3632746-CDS-L-elsbetiae_contig2112:15270..155131622815866.3632746-CDS-L-elsbetiae_contig2112:15270..15513Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2112 15271..15513 +
1691683155.3861156-CDS-L-elsbetiae_contig2112:15270..155131691683155.3861156-CDS-L-elsbetiae_contig2112:15270..15513Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2112 15271..15513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2112.6432.1prot_L-elsbetiae_contig2112.6432.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2112 15271..15513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2112.6432.1

>prot_L-elsbetiae_contig2112.6432.1 ID=prot_L-elsbetiae_contig2112.6432.1|Name=mRNA_L-elsbetiae_contig2112.6432.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=81bp
MTNAAALRSSTSTGVGSPAESEQEQEGSSSAMTNATALRSLAQFVPDKQF
LFFAPVCRSWRAAWGHRPALTSHVSPDSSLS
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mRNA from alignment at L-elsbetiae_contig2112:15244..15513+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2112.6432.1 ID=mRNA_L-elsbetiae_contig2112.6432.1|Name=mRNA_L-elsbetiae_contig2112.6432.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=270bp|location=Sequence derived from alignment at L-elsbetiae_contig2112:15244..15513+ (Laminarionema elsbetiae ELsaHSoW15)
CAAGAGGAAGAGGGTTCCTCCTCTGCCATGACCAACGCCGCCGCGCTCCG
CTCCTCAACCTCGACCGGTGTCGGCAGCCCCGCAGAATCAGAGCAAGAGC
AAGAGGGTTCCTCCTCCGCCATGACCAACGCCACCGCGCTCCGCTCGCTG
GCCCAGTTCGTGCCGGACAAGCAGTTCCTGTTCTTCGCCCCCGTGTGCAG
AAGCTGGAGGGCCGCGTGGGGGCACCGCCCGGCGCTCACCAGCCACGTAT
CCCCCGACTCGTCCCTGTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2112:15244..15513+

>mRNA_L-elsbetiae_contig2112.6432.1 ID=mRNA_L-elsbetiae_contig2112.6432.1|Name=mRNA_L-elsbetiae_contig2112.6432.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=486bp|location=Sequence derived from alignment at L-elsbetiae_contig2112:15244..15513+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACCAACGCCGCCGCGCTCCGCTCCTCAACCTCGACCGGTGTCGGCAG
CCCCGCAGAATCAGAGCAAGAGCAAGAGGGTTCCTCCTCCGCCATGACCA
ACGCCACCGCGCTCCGCTCGCTGGCCCAGTTCGTGCCGGACAAGCAGTTC
CTGTTCTTCGCCCCCGTGTGCAGAAGCTGGAGGGCCGCGTGGGGGCACCG
CCCGGCGCTCACCAGCCACGTATCCCCCGACTCGTCCCTGTCCATGACCA
ACGCCGCCGCGCTCCGCTCCTCAACCTCGACCGGTGTCGGCAGCCCCGCA
GAATCAGAGCAAGAGCAAGAGGGTTCCTCCTCCGCCATGACCAACGCCAC
CGCGCTCCGCTCGCTGGCCCAGTTCGTGCCGGACAAGCAGTTCCTGTTCT
TCGCCCCCGTGTGCAGAAGCTGGAGGGCCGCGTGGGGGCACCGCCCGGCG
CTCACCAGCCACGTATCCCCCGACTCGTCCCTGTCC
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