mRNA_L-elsbetiae_contig21038.6377.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21038.6377.1
Unique NamemRNA_L-elsbetiae_contig21038.6377.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig21038.6377.1 vs. uniprot
Match: D7G0R9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R9_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 2.030e-65
Identity = 106/146 (72.60%), Postives = 117/146 (80.14%), Query Frame = 1
Query:    1 REHGQAIYPPHEKPLKDIVTNYSSLTGSDKWLLSSIMLLVFRQVLQSPASMVSDGVKKYFKREYIKHLGEKWCTMTFAWEALRKLLQSASTLSFAVRAPSHNDQELKGLHARAQDMVYLAKEVIERDGVRP*MHSILHYSEAVNNH 438
            REHG A+YPP EKPLKDIVTNYSSLTGS+KWLLS IMLLVFRQVLQS  SMV     KYFK++ +K L   W   T AWE L KL+QSAS LSFAVRAPSHND+EL+ LH  AQDMV++AKEVI +DGVRP MHS LHYSEAV NH
Sbjct:    8 REHGHALYPPREKPLKDIVTNYSSLTGSNKWLLSPIMLLVFRQVLQSSWSMV-----KYFKQDLVKTLESNWGNQTGAWEDLLKLVQSASALSFAVRAPSHNDEELQQLHKHAQDMVHVAKEVIGKDGVRPSMHSTLHYSEAVKNH 148          
BLAST of mRNA_L-elsbetiae_contig21038.6377.1 vs. uniprot
Match: D7G5N3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5N3_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 3.120e-41
Identity = 76/110 (69.09%), Postives = 85/110 (77.27%), Query Frame = 1
Query:  109 MLLVFRQVLQSPASMVSDGVKKYFKREYIKHLGEKWCTMTFAWEALRKLLQSASTLSFAVRAPSHNDQELKGLHARAQDMVYLAKEVIERDGVRP*MHSILHYSEAVNNH 438
            MLLVFRQVLQS  SMV     KYFK++ +K L   W   T AWEAL KL+QSAS LSFAVRAPSHND+EL+ LH  AQDMV++AKEVI +DGVRP MHS LHYSEAV NH
Sbjct:    1 MLLVFRQVLQSSWSMV-----KYFKQDLVKTLESNWGNQTGAWEALLKLVQSASALSFAVRAPSHNDEELQQLHKHAQDMVHVAKEVIGKDGVRPSMHSTLHYSEAVKNH 105          
BLAST of mRNA_L-elsbetiae_contig21038.6377.1 vs. uniprot
Match: D8LH37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH37_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 1.070e-34
Identity = 73/140 (52.14%), Postives = 91/140 (65.00%), Query Frame = 1
Query:   19 IYPPHEKPLKDIVTNYSSLTGSDKWLLSSIMLLVFRQVLQSPASMVSDGVKKYFKREYIKHLGEKWCTMTFAWEALRKLLQSASTLSFAVRAPSHNDQELKGLHARAQDMVYLAKEVIERDGVRP*MHSILHYSEAVNNH 438
            +YP   + LKDIV+NYSSLTGSDKW L SIMLLVFR VL          +KK  KR+ +  L E W T     E L++L+Q AS LS+AVRAPSHND+EL  L   A+D+V    +V+ R G RP +HSILH +EA+  H
Sbjct:    8 LYPAGTERLKDIVSNYSSLTGSDKWTLQSIMLLVFRPVLV---------MKKNMKRQDVNDLREMWGTDGKVLEVLQQLVQVASHLSYAVRAPSHNDRELSQLDLLARDVVGFYSKVMGRTGSRPTIHSILHTTEAIRAH 138          
BLAST of mRNA_L-elsbetiae_contig21038.6377.1 vs. uniprot
Match: A0A6H5J9E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9E1_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 8.940e-32
Identity = 74/140 (52.86%), Postives = 92/140 (65.71%), Query Frame = 1
Query:   19 IYPPHEKPLKDIVTNYSSLTGSDKWLLSSIMLLVFRQVLQSPASMVSDGVKKYFKREYIKHLGEKWCTMTFAWEALRKLLQSASTLSFAVRAPSHNDQELKGLHARAQDMVYLAKEVIERDGVRP*MHSILHYSEAVNNH 438
            +YP   + LKDIVTNYSSLTGSDKW L SIMLLVFR VL +  +M     KK  KR+ I  L + W T     E L+KL++ AS LS AVRAPSHND EL  L   A+D+V +  +V+ R G RP +HS+LH S+A+  H
Sbjct:  565 LYPAGTERLKDIVTNYSSLTGSDKWTLQSIMLLVFRPVLANVGAM-----KKNMKRQDIAELRDVWGTDEKVLEVLQKLIEVASHLSCAVRAPSHNDLELAQLDLLARDVVGVYSKVLGRTGSRPTIHSVLHTSQAIRAH 699          
BLAST of mRNA_L-elsbetiae_contig21038.6377.1 vs. uniprot
Match: A0A6H5KXT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXT2_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 2.620e-29
Identity = 69/140 (49.29%), Postives = 86/140 (61.43%), Query Frame = 1
Query:   19 IYPPHEKPLKDIVTNYSSLTGSDKWLLSSIMLLVFRQVLQSPASMVSDGVKKYFKREYIKHLGEKWCTMTFAWEALRKLLQSASTLSFAVRAPSHNDQELKGLHARAQDMVYLAKEVIERDGVRP*MHSILHYSEAVNNH 438
            +YPP  + LKDIVTNY+SLTGSDKW L SIMLLVFR VLQ+  +M  +          I  L  +W T     EALR+LL+ AS LS A+RAPS  + EL  L   A+D V    +++ R G RP +HSILH  EA+  H
Sbjct:  122 LYPPGTEKLKDIVTNYTSLTGSDKWTLQSIMLLVFRMVLQNVPAMTRE----------INDLKAEWGTYEDVLEALRELLKRASLLSIALRAPSFTEPELLQLDKLARDAVGAFFKIMGRTGSRPTIHSILHTVEAIRLH 251          
BLAST of mRNA_L-elsbetiae_contig21038.6377.1 vs. uniprot
Match: A0A6H5JWQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWQ6_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 6.290e-28
Identity = 68/143 (47.55%), Postives = 85/143 (59.44%), Query Frame = 1
Query:   10 GQAIYPPHEKPLKDIVTNYSSLTGSDKWLLSSIMLLVFRQVLQSPASMVSDGVKKYFKREYIKHLGEKWCTMTFAWEALRKLLQSASTLSFAVRAPSHNDQELKGLHARAQDMVYLAKEVIERDGVRP*MHSILHYSEAVNNH 438
            G  +YPP   PLKDI TNYSSL GSDKWLL SI+LLV R VL    ++     K+Y K   ++ L + W         LRKLLQ AS L+FAVR+PS    E K L   A+D V +  E++ R GVR  +HS LHY +A+  H
Sbjct:  411 GSTLYPPATAPLKDICTNYSSLKGSDKWLLGSILLLVSRCVLHDATAL-----KEYVKPRELQALKDTWGGEQAVLAQLRKLLQVASALTFAVRSPSFYKAERKKLMEHARDTVGVYAELLGRGGVRTTVHSALHYVQAIEEH 548          
BLAST of mRNA_L-elsbetiae_contig21038.6377.1 vs. uniprot
Match: A0A6H5JWD2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWD2_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 2.370e-27
Identity = 63/111 (56.76%), Postives = 75/111 (67.57%), Query Frame = 1
Query:   19 IYPPHEKPLKDIVTNYSSLTGSDKWLLSSIMLLVFRQVLQSPASMVSDGVKKYFKREYIKHLGEKWCTMTFAWEALRKLLQSASTLSFAVRAPSHNDQELKGLHARAQDMV 351
            +YP   + LKDIV+NYSSLTGSDKW L SIMLLVFR VLQ   +M     KK  KR+ I  L E W T     E L++L+Q AS LS+AVRAPSHND+EL  L   A+D+V
Sbjct:   52 LYPAGTERLKDIVSNYSSLTGSDKWTLQSIMLLVFRPVLQDVRAM-----KKNMKRQDINDLREIWGTDGKVLEVLQQLVQVASHLSYAVRAPSHNDRELSQLDLLARDVV 157          
BLAST of mRNA_L-elsbetiae_contig21038.6377.1 vs. uniprot
Match: A0A6H5KLQ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLQ7_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 3.280e-27
Identity = 68/142 (47.89%), Postives = 89/142 (62.68%), Query Frame = 1
Query:   19 IYPPHEKPLKDIVTNYSSLTGSDKWLLSSIMLLVFRQVLQSPASMVSDGVKKYFKREYIKHLGEKWCTMTFAWEALRKLLQSASTLSFAVRAPSHNDQELKGLHARAQDM--VYLAKEVIERDGVRP*MHSILHYSEAVNNH 438
            +YPP    LKDI+T+Y SLTGSDKW L SIMLLVFR VLQ   SM     ++  K+  +K    +W T     +ALR L+Q  S LSFA+RAPS+ND+EL+ L   A+D   V    +++ R G RP +HS+LH  EA+  H
Sbjct:  290 LYPPGTDKLKDILTDYPSLTGSDKWTLQSIMLLVFRVVLQDIPSM-----RRNMKKRDMKAFKAEWGTYESVLDALRTLIQMVSLLSFALRAPSYNDKELRQLDNLARDAPGVGAFSQMMGRTGSRPTIHSMLHAVEAIRLH 426          
BLAST of mRNA_L-elsbetiae_contig21038.6377.1 vs. uniprot
Match: A0A6H5K9M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M0_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 4.690e-27
Identity = 66/140 (47.14%), Postives = 86/140 (61.43%), Query Frame = 1
Query:   19 IYPPHEKPLKDIVTNYSSLTGSDKWLLSSIMLLVFRQVLQSPASMVSDGVKKYFKREYIKHLGEKWCTMTFAWEALRKLLQSASTLSFAVRAPSHNDQELKGLHARAQDMVYLAKEVIERDGVRP*MHSILHYSEAVNNH 438
            +YPP    +KDIVTNY+SLTGSDKW L SIMLLVFR VLQ+  +M     ++      I  L  +W T     EALR+L+  +S LSFA+RAPS  + EL+ L   A+D V    +++ R G RP +HSILH  E +  H
Sbjct:  858 LYPPGTGKIKDIVTNYASLTGSDKWTLQSIMLLVFRMVLQNVPAM-----RRNMNTREINGLKAEWGTYEGLLEALRELMIRSSLLSFALRAPSFTEPELRQLDKLARDAVEAFSKIMGRTGSRPTIHSILHTVETIRLH 992          
BLAST of mRNA_L-elsbetiae_contig21038.6377.1 vs. uniprot
Match: D7G6M3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6M3_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 2.390e-26
Identity = 58/114 (50.88%), Postives = 81/114 (71.05%), Query Frame = 1
Query:   10 GQAIYPPHEKPLKDIVTNYSSLTGSDKWLLSSIMLLVFRQVLQSPASMVSDGVKKYFKREYIKHLGEKWCTMTFAWEALRKLLQSASTLSFAVRAPSHNDQELKGLHARAQDMV 351
            G  +YPP  +PLKD V +YSSLTGSDKWLL+SI+LLVFR V  + A+M     + Y K   +  L + + +M  A ++L +L+Q+AS+LSFA+RAPS+ND E++ LH  AQDM+
Sbjct:  190 GNNLYPPGAEPLKDPVADYSSLTGSDKWLLASIVLLVFRAVFHTTATM-----EMYIKGRELGELVDDYGSMQEARDSLLQLVQAASSLSFALRAPSYNDVEIEQLHKHAQDMI 298          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21038.6377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0R9_ECTSI2.030e-6572.60Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G5N3_ECTSI3.120e-4169.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LH37_ECTSI1.070e-3452.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9E1_9PHAE8.940e-3252.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXT2_9PHAE2.620e-2949.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWQ6_9PHAE6.290e-2847.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWD2_9PHAE2.370e-2756.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLQ7_9PHAE3.280e-2747.89Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9M0_9PHAE4.690e-2747.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6M3_ECTSI2.390e-2650.88Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21038contigL-elsbetiae_contig21038:784..1981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size438
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21038.6377.1prot_L-elsbetiae_contig21038.6377.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21038 892..1939 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815863.1644714-UTR-L-elsbetiae_contig21038:783..8911622815863.1644714-UTR-L-elsbetiae_contig21038:783..891Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21038 784..891 +
1691683153.7342896-UTR-L-elsbetiae_contig21038:783..8911691683153.7342896-UTR-L-elsbetiae_contig21038:783..891Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21038 784..891 +
1622815863.2171063-UTR-L-elsbetiae_contig21038:1939..19811622815863.2171063-UTR-L-elsbetiae_contig21038:1939..1981Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21038 1940..1981 +
1691683153.7695942-UTR-L-elsbetiae_contig21038:1939..19811691683153.7695942-UTR-L-elsbetiae_contig21038:1939..1981Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21038 1940..1981 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815863.1797595-CDS-L-elsbetiae_contig21038:891..9501622815863.1797595-CDS-L-elsbetiae_contig21038:891..950Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21038 892..950 +
1691683153.7439263-CDS-L-elsbetiae_contig21038:891..9501691683153.7439263-CDS-L-elsbetiae_contig21038:891..950Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21038 892..950 +
1622815863.1913462-CDS-L-elsbetiae_contig21038:1233..14141622815863.1913462-CDS-L-elsbetiae_contig21038:1233..1414Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21038 1234..1414 +
1691683153.7537818-CDS-L-elsbetiae_contig21038:1233..14141691683153.7537818-CDS-L-elsbetiae_contig21038:1233..1414Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21038 1234..1414 +
1622815863.2023919-CDS-L-elsbetiae_contig21038:1891..19391622815863.2023919-CDS-L-elsbetiae_contig21038:1891..1939Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21038 1892..1939 +
1691683153.761762-CDS-L-elsbetiae_contig21038:1891..19391691683153.761762-CDS-L-elsbetiae_contig21038:1891..1939Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21038 1892..1939 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21038.6377.1

>prot_L-elsbetiae_contig21038.6377.1 ID=prot_L-elsbetiae_contig21038.6377.1|Name=mRNA_L-elsbetiae_contig21038.6377.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
MLLVFRQVLQSPASMVSDGVKKYFKREYIKHLGEKWCTMTFAWEALRKLL
QSASTLSFAVRAPSHNDQELKGLHARAQDMVYLAKEVIERDGVRP*
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mRNA from alignment at L-elsbetiae_contig21038:784..1981+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21038.6377.1 ID=mRNA_L-elsbetiae_contig21038.6377.1|Name=mRNA_L-elsbetiae_contig21038.6377.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1198bp|location=Sequence derived from alignment at L-elsbetiae_contig21038:784..1981+ (Laminarionema elsbetiae ELsaHSoW15)
AGGGAGCATGGCCAAGCTATATACCCCCCACACGAGAAGCCACTCAAGGA CATCGTCACGAACTATTCTTCACTGACGGGTAGCGATAAGTGGCTGTTGT CCTCGATAATGCTCCTGGTTTTTCGACAAGTGCTGCAAAGCCCGGCGTCT ATGGTGAGTGATGGTGTGTGCGGACCTTTCTCGTCCATCAGCATTTGAGG GTATTAGATATATAGTCTAGACTAGATATATATAGAGATATATTACTTGC AACACAGCCACACAGCATTTCCGTGTGTGTTGTGCTCTCTGTGTGCTCGC TCTTACCCGCGTCGCGACACATGCCCGCTGCAAAATTTCGGTCTAAACAT TCGGTCTCTATCTAAATATATATATATAGATATACCCATCACCCCGCCAT ACACGCGTTCTCTCTATCTCTCTCGCTTTATCGCGGCCCGTTGATCACAG AAAAAAATATTTCAAAAGGGAATATATTAAGCATCTGGGGGAGAAATGGT GCACCATGACATTCGCATGGGAGGCATTGCGAAAGCTGCTGCAGTCGGCG TCTACGTTGTCGTTTGCTGTGAGAGCACCTTCTCACAATGATCAAGAGTT GAAAGGGCTACACGCTCGTGCTCAGGATATGGTGAGAATGTTCGCCGGGT GTTTCCATGATTTTGGCCAAATGTAATATAGATTCCAAATAGGAATTCGC GGGGGCCGCCGACAATTTTTCTCAGGGTATATACGGGGTATGTCTATGTC TCCGGGGGCTTTTTCTGTCGGAATTCGTGAATATATGGTCATCATTTTCG CTACGCGTGCTCGGCTCCCACAATTTAGAATCTACCATAACCGGTCTACC ATAACCGGTGGTCTTATAGTTACAGCTTAGCATATATCTGTATCTCAAAT GTATTACACTATGATGGCGCCTGTTGCCACCGCGACACGAACGAATATCA TACACATTTCGGTGTAAACATGATGTACATTGTACAACTTCTACACGCAC GTCCGTGGAAAACAGCTTTACATTACAATAATACCCCCCCCCTCATATCT CTCGCTCTCCCCGCCCTGTCCTCCTGTGTGGTCTATGACACGAAAACGAT TCTCCTAGGTTTACTTAGCGAAGGAAGTTATCGAGAGGGACGGCGTAAGG CCATGAATGCACAGTATTCTGCACTATTCGGAAGCTGTCAACAACCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21038:784..1981+

>mRNA_L-elsbetiae_contig21038.6377.1 ID=mRNA_L-elsbetiae_contig21038.6377.1|Name=mRNA_L-elsbetiae_contig21038.6377.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig21038:784..1981+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCCTGGTTTTTCGACAAGTGCTGCAAAGCCCGGCGTCTATGGTGAG
TGATGGTGTATGCTCCTGGTTTTTCGACAAGTGCTGCAAAGCCCGGCGTC
TATGGTGAGTGATGGTGTAAAAAAATATTTCAAAAGGGAATATATTAAGC
ATCTGGGGGAGAAATGGTGCACCATGACATTCGCATGGGAGGCATTGCGA
AAGCTGCTGCAGTCGGCGTCTACGTTGTCGTTTGCTGTGAGAGCACCTTC
TCACAATGATCAAGAGTTGAAAGGGCTACACGCTCGTGCTCAGGATATGA
AAAAAATATTTCAAAAGGGAATATATTAAGCATCTGGGGGAGAAATGGTG
CACCATGACATTCGCATGGGAGGCATTGCGAAAGCTGCTGCAGTCGGCGT
CTACGTTGTCGTTTGCTGTGAGAGCACCTTCTCACAATGATCAAGAGTTG
AAAGGGCTACACGCTCGTGCTCAGGATATGGTTTACTTAGCGAAGGAAGT
TATCGAGAGGGACGGCGTAAGGCCATGAGTTTACTTAGCGAAGGAAGTTA
TCGAGAGGGACGGCGTAAGGCCATGA
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