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Homology
BLAST of mRNA_L-elsbetiae_contig10673.635.1 vs. uniprot
Match: D8LQK9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQK9_ECTSI) HSP 1 Score: 275 bits (704), Expect = 9.840e-77 Identity = 191/346 (55.20%), Postives = 218/346 (63.01%), Query Frame = 2
Query: 2 FTHPSGNGLTKALSLCKNMESASKLFKEAALQIKIVVVELAGEHEPNTVWRVNPEAFESLPENRKVMMLRHLRSLVVAYDHLSDDMRRDLTTALEIIKNREVLHMMGKYCVQSEAAEDRRREAKLASADERLKIGTRRPS------------------------ATRQNAASGRRTPPVGTRASTXXXXXXXXXXXXXXXXXXGCAFTPLRSGGTADSXXXXXXXXXXX---RASPPFGSGTGSRKAPLSTPRSTRSAXXXXXXXXXXXXXGMSGSRVSRGVASQSRGRRDTVAAAAAEGGGSSANKHRLSKSPVTRSRP-GWRSKSPM----RTVRRTSQSPAPR 943
FT + GLTKAL LCKNM+SA KLFKEAALQIKI+VVELAGEHEPNTVWRVN F+ LPENRKVM LRHLRSLVVAYDHLSD+MRRDLTTALEIIKNREVL+MMGKYC+Q+EAAE++R EAKLA+ADERLK+G RRPS TRQ+ GRR+PP+G RAS TP+RS G A+S RASPP GSG SRKAPL TPRS RS G+ GS + RGVAS SR RR++ A A G SSA + R S+SP+ + RP G RSKSP+ R RR S+S PR
Sbjct: 1051 FTPHTAGGLTKALGLCKNMDSALKLFKEAALQIKIIVVELAGEHEPNTVWRVNQSLFKGLPENRKVMTLRHLRSLVVAYDHLSDEMRRDLTTALEIIKNREVLNMMGKYCIQAEAAEEKRWEAKLATADERLKVG-RRPSDMLGSSVRKARLRSALHQASCLGNGTRQSITPGRRSPPMGIRASFSEPSPPSLARGGLGTPT---TTTPVRSNGAAESPGSGGSNGGNNVGGRASPPLGSG--SRKAPLITPRSGRSTATPPG--------GVGGSGIPRGVASHSR-RRESFAVEAEAG--SSAMEDRRSRSPMFKRRPAGGRSKSPVTARVRGTRRVSRSLTPR 1379
BLAST of mRNA_L-elsbetiae_contig10673.635.1 vs. uniprot
Match: F0XY39_AURAN (Calponin-homology (CH) domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XY39_AURAN) HSP 1 Score: 62.8 bits (151), Expect = 1.720e-6 Identity = 40/120 (33.33%), Postives = 68/120 (56.67%), Query Frame = 2
Query: 26 LTKALSLCKNMESASKLFKEAALQIKIVVVELAGEHEPN-TVWRV--NPEAFESLPENRKVMMLRHLRSLVVAYDHLSDDMRRDLTTALEIIKNREVLHMMGKYCVQSEAAEDRRREAKL 376
L KAL + + +KLFK A L++K VVV + ++ + W +F ++ + ++L HLR+L VAYD+++ D +R+LTT E++ N + L + K+CV S+ RE +L
Sbjct: 455 LLKALDRADDGVARAKLFKHAHLKVKEVVVRVTRSNQRSGRHWEPFHGDASFATVQPHELALILTHLRNLAVAYDNMTADEKRELTTVRELVVNLDWLCALAKHCVASDERRYADRERRL 574
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 61.2 |
Seed ortholog evalue | 9.3e-07 |
Seed eggNOG ortholog | 44056.XP_009033304.1 |
Hectar predicted targeting category | other localisation |
EggNOG free text desc. | Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family |
EggNOG OGs | 2CN62@1,2QU2F@2759 |
COG Functional cat. | S |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
Exons | 5 |
Model size | 1771 |
Cds size | 900 |
Stop | 1 |
Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815286.6059556-UTR-L-elsbetiae_contig10673:543..1359 | 1622815286.6059556-UTR-L-elsbetiae_contig10673:543..1359 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig10673 544..1359 - |
1691682817.8690014-UTR-L-elsbetiae_contig10673:543..1359 | 1691682817.8690014-UTR-L-elsbetiae_contig10673:543..1359 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig10673 544..1359 - |
1622815286.6801786-UTR-L-elsbetiae_contig10673:4738..4793 | 1622815286.6801786-UTR-L-elsbetiae_contig10673:4738..4793 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig10673 4739..4793 - |
1691682817.946502-UTR-L-elsbetiae_contig10673:4738..4793 | 1691682817.946502-UTR-L-elsbetiae_contig10673:4738..4793 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig10673 4739..4793 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815286.618929-CDS-L-elsbetiae_contig10673:1359..1892 | 1622815286.618929-CDS-L-elsbetiae_contig10673:1359..1892 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10673 1360..1892 - |
1691682817.886402-CDS-L-elsbetiae_contig10673:1359..1892 | 1691682817.886402-CDS-L-elsbetiae_contig10673:1359..1892 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10673 1360..1892 - |
1622815286.6309469-CDS-L-elsbetiae_contig10673:2553..2659 | 1622815286.6309469-CDS-L-elsbetiae_contig10673:2553..2659 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10673 2554..2659 - |
1691682817.8983254-CDS-L-elsbetiae_contig10673:2553..2659 | 1691682817.8983254-CDS-L-elsbetiae_contig10673:2553..2659 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10673 2554..2659 - |
1622815286.641593-CDS-L-elsbetiae_contig10673:3597..3762 | 1622815286.641593-CDS-L-elsbetiae_contig10673:3597..3762 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10673 3598..3762 - |
1691682817.9122026-CDS-L-elsbetiae_contig10673:3597..3762 | 1691682817.9122026-CDS-L-elsbetiae_contig10673:3597..3762 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10673 3598..3762 - |
1622815286.6549928-CDS-L-elsbetiae_contig10673:4034..4103 | 1622815286.6549928-CDS-L-elsbetiae_contig10673:4034..4103 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10673 4035..4103 - |
1691682817.926393-CDS-L-elsbetiae_contig10673:4034..4103 | 1691682817.926393-CDS-L-elsbetiae_contig10673:4034..4103 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10673 4035..4103 - |
1622815286.670472-CDS-L-elsbetiae_contig10673:4711..4738 | 1622815286.670472-CDS-L-elsbetiae_contig10673:4711..4738 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10673 4712..4738 - |
1691682817.9364142-CDS-L-elsbetiae_contig10673:4711..4738 | 1691682817.9364142-CDS-L-elsbetiae_contig10673:4711..4738 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10673 4712..4738 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10673.635.1 >prot_L-elsbetiae_contig10673.635.1 ID=prot_L-elsbetiae_contig10673.635.1|Name=mRNA_L-elsbetiae_contig10673.635.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=300bp
MESASKLFKEAALQIKIVVVELAGEHEPNTVWRVNPEAFESLPENRKVMM LRHLRSLVVAYDHLSDDMRRDLTTALEIIKNREVLHMMGKYCVQSEAAED RRREAKLASADERLKIGTRRPSATRQNAASGRRTPPVGTRASTTNPTSSS KGAASSSPPPPGCAFTPLRSGGTADSPSSNGGEGGGGRASPPFGSGTGSR KAPLSTPRSTRSADGSGNNVSTPAGGGMSGSRVSRGVASQSRGRRDTVAA AAAEGGGSSANKHRLSKSPVTRSRPGWRSKSPMRTVRRTSQSPAPRSKK* back to topmRNA from alignment at L-elsbetiae_contig10673:544..4793- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig10673.635.1 ID=mRNA_L-elsbetiae_contig10673.635.1|Name=mRNA_L-elsbetiae_contig10673.635.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4250bp|location=Sequence derived from alignment at L-elsbetiae_contig10673:544..4793- (Laminarionema elsbetiae ELsaHSoW15) CTTCACGCATCCCTCCGGCAACGGGCTGACGAAGGCATTGAGCCTTTGCA
AAAACATGGAGTCGGCTTCGAAGCTCTTCAAGGCAAGAGCGCCATGAGAA
CGACGGTGTTTTTTCTCTTTTTCAATCTACATACCATTACCTGCACGAAC
AAGCCGCGCACACTATTTAGGGCCTTTTATCCGCGTCGCTTGTCGTGGAT
CATAGAACACCGCCGACGGTGTTGTGAAAGTGTCGGGCAGACCAAAACAT
TTGCAGGTGAATAAGCACATGTGGAACTAAGTAGCTGCTTCTGAGGATAG
TTCTTGCGGCAACGTTTTCCGTCGCTTCTTCGGAAAAGGGCACTCGGTAC
GAAGTTGTATTTTTGTTTCCGTGTCTTGGTAGCTGGACGTAAACGCTGGC
GTCCTTGTGTGTTGGCGTTGTGTGCTCTGTCGCTGTTCGAAGCTGAAGCT
GTTCTTGGAAGTAGCCAATATTGAAACCAACATGCCGTGATTTATCGGTG
CTGACGCATGGGCGGGTGCACTGCGAAACCAGGAGGTTGCTTACACCTTA
TTCGCTAAATGCATTGCCGTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGGTGTCCCTGTCATGTTCCCTTGC
TGCGCGTGCGGCCCATGATGTGATCGTCTCATGCCTGCAGGAAGCGGCCC
TGCAGATCAAGATCGTCGTGGTCGAGCTTGCAGGAGAGCACGAGCCCAAC
ACGGTTTGGGTAAGTCGCTGCCGCTTCGGCCAGGGTCGCCGAGGGGACAC
GATAATACAAGTAGCTGGGATGTAGCCCAAGTAGAGCTCGCTCTTCTCCC
CGCAACTGCGTTCTGCATGCTCGTTGGCTCTGCGAATGTTTTTGGGGCGC
AATACCTTGGGCACAACTGTCATGAAGGTAGAAACAGATATCCAAGCTAC
AGAACCATGCTCGGGCCCCCTGGCTAGAAAACAAGAACCGCTGTTCCCCC
ACCATTGTGTGTTTTTTTCGCCGAAAATAAGAGGGTCAACCCGGAGGCCT
TCGAGAGCCTGCCGGAGAACCGCAAAGTGATGATGCTGAGGCATCTGAGG
AGCTTGGTAGTGGCGTATGACCATTTGAGCGATGACATGAGGAGGGACCT
GACCACGGCGCTGGAGATTATCAAGAACAGGGAGGTGTTGCACATGGTGA
GTAGACCGTTCAAGCTCCTAAAAATACGAAGGTTTAGGTTTTCGACACAA
CGAGAAGTATGCCGCCGTATGCAGGCGTTTGTTGAGAGATAAGACGAGGT
ATTGGGTGGTGAGGCTGGAGATTATTCAGAATAGGGAGGTATTGTTGTTT
GTTGTGTCTCACATAAGCTCTCTAGTCCAAAACATCCTTGGGGGCCCGTG
GTCACAAAACAAGGCAAACTCGACGCCGCGGAAGAAAAATAAGCAAAAAT
ATGGTGCATACGCGCCCGGCGGTACTAAACTGGACCCCGGGGGTGTTGGC
CCACGGTAAACATAAGGTCATCGTGGTCCCGTTATAGTGGGTTTAACTTA
CGTAGCGGCCAACAGCTGTTGCGAAATTCGACCCCCATGCGTCATGGGGT
GACGTGGTGCGTTCACTAAAGGAGGAACCGCGTGTCGTAGCCCCGAATTC
ATTGCACGTTGCACGTGTGTGCTTTTGGCCGTTTAGTCTTCTGTTGTAGA
CGGGTTTGGTTTCCTCTAACAGCACAGAAATATGGGCTCTTCCTGTAGTA
GGCCCCCAAAGCTGGGAATTTTTCGCTTCATTTCCCAGACGAATACCCCC
CGCTGCCCCCACAGCTCTTTTTGAGAATTGGGGGTTCTATTTATGCAGAA
AGCCTTTGTAGGTACATGCGGCACCTTGCTCCGGTTGTTTATAAATCCTC
GCGACGACAGACGCAAAACCACCCGTGCATTCGCGTTCGGTTTTGTGTGA
TGGTCGTATCTGCATTCATTCGGATCCGATATGAGGGGCGGATACTCCAG
AATCATGTAGGCACCTGTGGAATTAAGCATACTGCTGTACCGGGTAGACA
TGCTTATTTTTGTCTGTGTGCGCAAACATAACTTTTCCGCGCTCTTTTAC
GGACCTCCAACGCGTGCGCCGCCTCTACTGCCAGATGGGCAAGTACTGCG
TTCAGTCGGAAGCTGCGGAGGACAGGCGGAGGGAAGCCAAACTCGCTAGT
GCGGACGAGCGCTTGAAGATTGGCACGAGACGACCTTCAGGTATATCAGC
AGCCACTCGGATACGAAAGAAGGCGGTTCGGTGTTTATGTTTGGGAAGGG
GGGTCGTTTTTCATTTTCTTCCTCTGGGGGGAGGGGGGGGGGGGGGGGGG
GGGTTTTTTGTTGTTTCCCTCTCCCCGTGCCATTTTGCTTTTGCTTATTA
ATTTTTTTATTAATAATAAAAGAGAAAAAAGTNNNNNNNNNNGGCTTGGG
GGGAGCGGGGGGGGGGGGGGGGGGGTTGGGGGGGGGGGGGGGGGGGTGTG
TGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGTTTTTC
GATGTTTCCCTCACCCCGTGCCCATTTGCGTTGCACTCATAATTATTTAA
TTCACAACTACAGAGCAATAAGTGGTCACTGATCGTTTTTACCTGCTGTC
TAGAATCGTTGTACGGGAGAGCGTGGTCAGCGTAGGCATTATTAAGCGGC
AGGGGTCGCGTATATCCAACCCCCCTCTGTTTCCTCCCTTCGTGCCTTCC
CTCCATACAAGCGATTATGGCCGTGTGTACGTACATACGTACTAACCGAC
CAATCCTCACATAAGTGCACAAGATACGCCCCCCTTCTCAACACCCCACG
CCCCGCTCTTTGCCCGCCCGCCCACTGATTGCCGGACCACACCCATCATA
GCGACGCGCCAAAACGCGGCCTCTGGTAGACGAACACCACCTGTCGGGAC
TCGGGCTTCCACCACCAACCCCACCTCATCATCGAAGGGTGCCGCTAGCA
GCAGCCCCCCTCCCCCCGGGTGCGCCTTCACGCCGTTACGCAGTGGCGGC
ACCGCCGATTCTCCGAGCAGCAACGGCGGTGAAGGTGGCGGCGGTAGAGC
TTCGCCCCCCTTCGGTAGCGGCACCGGCAGCCGTAAGGCTCCGCTCAGCA
CCCCGAGATCTACGAGGTCAGCGGATGGCAGCGGCAACAACGTCAGTACT
CCTGCGGGTGGTGGAATGAGTGGCTCTAGGGTATCGAGGGGCGTGGCATC
GCAGTCTCGCGGCCGAAGAGATACCGTGGCGGCGGCGGCGGCGGAGGGGG
GGGGGTCGTCAGCCAACAAGCACCGCCTCTCGAAGTCTCCCGTTACGCGT
AGTAGACCTGGTTGGAGGTCCAAATCTCCGATGAGGACCGTCCGCCGGAC
ATCGCAGTCTCCGGCGCCGAGATCGAAGAAATAAGGCTCGCTTGTGAGGT
CAGCCTGGGGCTCCACAGAGCAGTGGCTTGGCTAAATATTGGGCTCTCTG
AAACCGATGGCCGTCGGCGTATTGGCTGTGCTGTGTTTTCTGCTCGTCCG
CCCTTTCGAGTCGTGTGCTCTTCCTTCTCCGCGTCTCTTGAAGCGACCGT
ACAGGTTTTGTAGCATTGCTTTGCTTGAGTTCGTATCTTTGGGAAGATAA
GTGCGCAGTAGTTTCGTGTTAGCATTCATTGAATGGTGTGAGAGTCTTGC
TCGGTTTAGACGTAACCGACATCGAATAACTGTATTTTACGTGCTGGTTG
TGTTCGCGTGGTGGTTGTTTGGTTTCTCTGTGTTTGATGTGCCGCGTACT
TTTAACTGTCTACTACGGAGTACATACCAAGTTATACCAGTTATCAATGT
AGTATATTCCCAACGAGTTTGCCGCCGCGTTGAGAGGAGACGCAGCTTTC
ATTCCAGCGTCGTCGACGTTTCCCCCCGTCTCAGACTTTGCGAGACCCGG
CGGTCCTCACGAGACCAAACAAACATACCACGCGCCTGGCGTCATTCACG
ACTCGCAGAGTGTGTGTAGATGTGTAGTGAATGCCCGACATTTTTGTGCC
CATCAGAGTAGGGTCGAATATAGTACCTTAGCATGGGCGAAACTCAGGAA
GCTGGTAGCATTTTGTTGGTTGTAAGCAGCTTACTGTGATTTCCCTTCTC
GTGGCGTTTACCGATACCGTTGCGACTGCTGTATGTAGATGCGTATAGCG
CGCTGGTGGGAAAATATAAATGCATACATAGCGACCCGTGTCGTTTTGCG
back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig10673:544..4793- >mRNA_L-elsbetiae_contig10673.635.1 ID=mRNA_L-elsbetiae_contig10673.635.1|Name=mRNA_L-elsbetiae_contig10673.635.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1800bp|location=Sequence derived from alignment at L-elsbetiae_contig10673:544..4793- (Laminarionema elsbetiae ELsaHSoW15) ATGGAGTCGGCTTCGAAGCTCTTCAAGATGGAGTCGGCTTCGAAGCTCTT CAAGGAAGCGGCCCTGCAGATCAAGATCGTCGTGGTCGAGCTTGCAGGAG AGCACGAGCCCAACACGGTTTGGGAAGCGGCCCTGCAGATCAAGATCGTC GTGGTCGAGCTTGCAGGAGAGCACGAGCCCAACACGGTTTGGAGGGTCAA CCCGGAGGCCTTCGAGAGCCTGCCGGAGAACCGCAAAGTGATGATGCTGA GGCATCTGAGGAGCTTGGTAGTGGCGTATGACCATTTGAGCGATGACATG AGGAGGGACCTGACCACGGCGCTGGAGATTATCAAGAACAGGGAGGTGTT GCACATGAGGGTCAACCCGGAGGCCTTCGAGAGCCTGCCGGAGAACCGCA AAGTGATGATGCTGAGGCATCTGAGGAGCTTGGTAGTGGCGTATGACCAT TTGAGCGATGACATGAGGAGGGACCTGACCACGGCGCTGGAGATTATCAA GAACAGGGAGGTGTTGCACATGATGGGCAAGTACTGCGTTCAGTCGGAAG CTGCGGAGGACAGGCGGAGGGAAGCCAAACTCGCTAGTGCGGACGAGCGC TTGAAGATTGGCACGAGACGACCTTCAGATGGGCAAGTACTGCGTTCAGT CGGAAGCTGCGGAGGACAGGCGGAGGGAAGCCAAACTCGCTAGTGCGGAC GAGCGCTTGAAGATTGGCACGAGACGACCTTCAGCGACGCGCCAAAACGC GGCCTCTGGTAGACGAACACCACCTGTCGGGACTCGGGCTTCCACCACCA ACCCCACCTCATCATCGAAGGGTGCCGCTAGCAGCAGCCCCCCTCCCCCC GGGTGCGCCTTCACGCCGTTACGCAGTGGCGGCACCGCCGATTCTCCGAG CAGCAACGGCGGTGAAGGTGGCGGCGGTAGAGCTTCGCCCCCCTTCGGTA GCGGCACCGGCAGCCGTAAGGCTCCGCTCAGCACCCCGAGATCTACGAGG TCAGCGGATGGCAGCGGCAACAACGTCAGTACTCCTGCGGGTGGTGGAAT GAGTGGCTCTAGGGTATCGAGGGGCGTGGCATCGCAGTCTCGCGGCCGAA GAGATACCGTGGCGGCGGCGGCGGCGGAGGGGGGGGGGTCGTCAGCCAAC AAGCACCGCCTCTCGAAGTCTCCCGTTACGCGTAGTAGACCTGGTTGGAG GTCCAAATCTCCGATGAGGACCGTCCGCCGGACATCGCAGTCTCCGGCGC CGAGATCGAAGAAATAACGACGCGCCAAAACGCGGCCTCTGGTAGACGAA CACCACCTGTCGGGACTCGGGCTTCCACCACCAACCCCACCTCATCATCG AAGGGTGCCGCTAGCAGCAGCCCCCCTCCCCCCGGGTGCGCCTTCACGCC GTTACGCAGTGGCGGCACCGCCGATTCTCCGAGCAGCAACGGCGGTGAAG GTGGCGGCGGTAGAGCTTCGCCCCCCTTCGGTAGCGGCACCGGCAGCCGT AAGGCTCCGCTCAGCACCCCGAGATCTACGAGGTCAGCGGATGGCAGCGG CAACAACGTCAGTACTCCTGCGGGTGGTGGAATGAGTGGCTCTAGGGTAT CGAGGGGCGTGGCATCGCAGTCTCGCGGCCGAAGAGATACCGTGGCGGCG GCGGCGGCGGAGGGGGGGGGGTCGTCAGCCAACAAGCACCGCCTCTCGAA GTCTCCCGTTACGCGTAGTAGACCTGGTTGGAGGTCCAAATCTCCGATGA GGACCGTCCGCCGGACATCGCAGTCTCCGGCGCCGAGATCGAAGAAATAA back to top
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